BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18540.1
Length=861
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920787 jgi|Araly1|920787|scaffold_102068.1 1269 0.0
Ahg476546 jgi|Araly1|476546|fgenesh2_kg.2__1676__AT1G74050.1 669 0.0
> Ahg920787 jgi|Araly1|920787|scaffold_102068.1
Length=833
Score = 1269 bits (687), Expect = 0.0
Identities = 784/830 (94%), Gaps = 10/830 (1%)
Strand=Plus/Plus
Query 22 AAGCCGAAAAAATGCCGGCGGCG-A--AGAGGACTCCCAAGGTTAACCGTAACCCTGACC 78
|||| | |||||||||||||||| | |||||||||| || |||||||||||||||||||
Sbjct 10 AAGCAGCAAAAATGCCGGCGGCGAAGCAGAGGACTCCGAAAGTTAACCGTAACCCTGACC 69
Query 79 TAATCAGGGGAGTTGGAAAATATTCGAGGTCTCAGATGTACCACAAGAGAGGTTTGTGGG 138
|||||||||| || || ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 70 TAATCAGGGGGGTCGGCAAATACTCGAGGTCTCAGATGTACCACAAGAGAGGTTTGTGGG 129
Query 139 CTATCAAGGCCAAGAACGGTGGCGTTTTCCCTCGTCACGATGCTCAGCCAAAGGTCGACG 198
||||||||||||| ||||| |||||||||||||||||||||||| || | |||||||| |
Sbjct 130 CTATCAAGGCCAAAAACGGCGGCGTTTTCCCTCGTCACGATGCTAAGTCTAAGGTCGATG 189
Query 199 CTCCGGTTGAGAAGCCTGCCAAGTTTTATCCGGCGGAAGACGTCAAGAAGCCGCTTGTTA 258
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 190 CTCCGGTGGAGAAGCCTGCCAAGTTTTATCCGGCGGAAGACGTTAAGAAGCCGCTCGTTA 249
Query 259 ACAGACGCAAGCCTAAGCCTACCAAGCTAAAAGCCAGCATCACTCCAGGAACTGTGTTGA 318
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 250 ACAGACGCAAGCCTAAGCCTACCAAGCTAAAATCAAGCATCACTCCAGGAACTGTGTTGA 309
Query 319 TCATTCTTGCTGGTAGATTCAAGGGTAAGAGAGTTGTCTTCCTCAAGCAACTTTCTTCTG 378
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 310 TCATTCTTGCTGGTAGATTCAAGGGAAAGAGAGTTGTCTTCCTCAAGCAACTTCCTTCTG 369
Query 379 GTTTGCTTCTTGTAACAGGACCATTCAAGATTAATGGTGTTCCATTGAGACGTGTTAACC 438
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 370 GTTTGCTTCTTGTAACAGGACCATTCAAGATCAATGGTGTGCCATTGAGACGTGTTAACC 429
Query 439 AAGCCTATGTGATTGGAACCTCCACAAAGATTGACATTTCTGGAGTCAACACTGAGAAAT 498
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 430 AAGCCTATGTGATTGGAACCTCCACAAAGGTTGACATTTCTGGAGTCAACACTGAGAAAT 489
Query 499 TCGATGACAAGTATTTTGGAAAGGTTGCTgagaagaagaagaagaaaacagaaggcgaat 558
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 490 TCGATGACAAGTATTTTGGAAAGGTTGCTGAGAAGAAGAAGAAGAAAGGAGAAGGCGAAT 549
Query 559 tcttcgaagctgagaaagaggagaagaaggagatcccacaggagaagaaggaagaccaga 618
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 550 TCTTCGAAGCTGAGAAAGAGGAGAAGAAAGAGATCCCACAGGAGAAGAAGGAAGACCAGA 609
Query 619 aAACCGTTGATGCTGCTCTGATCAAATCCATTGAAGCT-GTCCCAGAGCTCAAGGTTTAC 677
|||||||||| |||||||||||||||| ||| | || | |||||||||||||||||||||
Sbjct 610 AAACCGTTGACGCTGCTCTGATCAAATTCATCG-AGGTAGTCCCAGAGCTCAAGGTTTAC 668
Query 678 CTTGGAGCCAGGTTCTCATTGAGTCAAGGAATGAAACCACATGAGCTTGTTTTCTAGATT 737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 669 CTTGGAGCCAGGTTCTCATTGAGTCAAGGAATGAAACCACATGAGCTTGTTTTCTAGATT 728
Query 738 TCGTATTGTTTCTCAAATTTTAAGAATATCTGTTTCCCTGAGTATTTTCATCTTTAATCG 797
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 729 TCGTATTGTTTCTCAAATTTTAAGAATATCTGTTTCCCTGAGTTTTTTCCTCTTTAATCA 788
Query 798 TCCTTGGATCTTAAAGACTATTTTCTCTGATTTTATATATCAAATTTTCG 847
|| || ||| || |||||||||||||||||| ||||||||||||||||
Sbjct 789 TCATTTGAT---AA-GACTATTTTCTCTGATTT-ATATATCAAATTTTCG 833
> Ahg476546 jgi|Araly1|476546|fgenesh2_kg.2__1676__AT1G74050.1
Length=1005
Score = 669 bits (362), Expect = 0.0
Identities = 597/712 (84%), Gaps = 10/712 (1%)
Strand=Plus/Plus
Query 33 ATGCCGGCGGCGA-AGAGGACTCCCAAGGTTAACCGTAACCCTGACCTAATCAGGGGAGT 91
|||||||| | | ||||||| | ||||| ||| | |||||||| || ||||||||||
Sbjct 127 ATGCCGGC-GAAACAGAGGACGGCGAAGGTCAACAGAAACCCTGATCTGGTCAGGGGAGT 185
Query 92 TGGAAAATATTCGAGGTCTCAGATGTACCACAAGAGAGGTTTGTGGGCTATCAAGGCCAA 151
||| ||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 186 TGGTAAATACTCGAGATCTCAGATGTACCATAAGAGAGGTTTGTGGGCTATCAAGGCCAA 245
Query 152 GAACGGTGGCGTTTTCCCTCGTCACGATGCTCAGCCAAAGG-TCGACGCTCCGGTTGAGA 210
|| || ||||||||||| || ||||| ||| | | |||| | || |||||| || |
Sbjct 246 AAATGGAGGCGTTTTCCCCCGCCACGACGCTAAATCTAAGGGT-GATACTCCGGCGGAAA 304
Query 211 AGCCTGCC-AAGTTTTATCCGGCGGAAGACGTCAAGAAGCCGCTTGTTAACAGACGCAAG 269
|||| || ||||| ||||| || |||||||| ||||| || || ||||| |||| |
Sbjct 305 AGCCA-CCGAAGTTCTATCCAGCTGAAGACGTGAAGAAACCTCTCCCCAACAGGCGCACG 363
Query 270 CCTAAGCCTACCAAGCTAAAAGCCAGCATCACTCCAGGAACTGTGTTGATCATTCTTGCT 329
|| || ||||||||||| | ||| ||||| || ||||| || ||| |||| |||||||||
Sbjct 364 CCAAAACCTACCAAGCTCAGAGCTAGCATTACCCCAGGGACAGTGCTGATTATTCTTGCT 423
Query 330 GGTAGATTCAAGGGTAAGAGAGTTGTCTTCCTCAAGCAACTTTCTTCTGGTTTGCTTCTT 389
|||||||||||||| ||||||||||||||||| ||||| ||| | |||||||||||||||
Sbjct 424 GGTAGATTCAAGGGAAAGAGAGTTGTCTTCCTTAAGCAGCTTGCCTCTGGTTTGCTTCTT 483
Query 390 GTAACAGGACCATTCAAGATTAATGGTGTTCCATTGAGACGTGTTAACCAAGCCTATGTG 449
|| || |||||||||||| ||||||||||||| ||||||||||| ||||| ||||||||
Sbjct 484 GTGACTGGACCATTCAAGGTTAATGGTGTTCCTTTGAGACGTGTGAACCAGGCCTATGTC 543
Query 450 ATTGGAACCTCCACAAAGATTGACATTTCTGGAGTCAACACT-GAGAAATTCGATGACAA 508
||||| || ||||||||| |||||||||||||||||| | || || ||||||||||| ||
Sbjct 544 ATTGGTACTTCCACAAAGGTTGACATTTCTGGAGTCACC-CTCGATAAATTCGATGATAA 602
Query 509 GTATTTTGGAAAGGTTGCTgagaagaagaagaagaaaacagaaggcgaattcttcgaagc 568
||| ||||| ||||||||||||||||| |||||||| ||||| || || ||||| || ||
Sbjct 603 GTACTTTGGCAAGGTTGCTGAGAAGAAAAAGAAGAAGACAGAGGGAGAGTTCTTTGAGGC 662
Query 569 tgagaaagaggagaagaaggagatcccacaggagaa-gaaggaagaccagaaAACCGTTG 627
||||||||||||||||||| |||||||||||| ||| ||| || || |||||| |||| |
Sbjct 663 TGAGAAAGAGGAGAAGAAGCAGATCCCACAGG-GAAAGAAAGATGATCAGAAAGCCGTGG 721
Query 628 ATGCTGCTCTGATCAAATCCATTGAAGCTGTCCCAGAGCTCAAGGTTTACCTTGGAGCCA 687
| || ||| |||||||| |||||||||| || |||||||| ||| |||||| || || |
Sbjct 722 ACGCAGCTTTGATCAAAGCCATTGAAGCAGTTCCAGAGCTGAAGACTTACCTAGGCGCAA 781
Query 688 GGTTCTCATTGAGTCAAGGAATGAAACCACATGAGCTTGTTTTCTAGATTTC 739
|||| ||||||| ||||||||||| |||||||| |||||||||||| ||||
Sbjct 782 GGTTTTCATTGAAACAAGGAATGAAGCCACATGAACTTGTTTTCTAGGTTTC 833
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31870758612
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5