BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18550.1
Length=2331
Score E
Sequences producing significant alignments: (Bits) Value
Ahg335111 jgi|Araly1|335111|fgenesh1_pg.C_scaffold_1001676 3504 0.0
> Ahg335111 jgi|Araly1|335111|fgenesh1_pg.C_scaffold_1001676
Length=2181
Score = 3504 bits (1897), Expect = 0.0
Identities = 2094/2188 (96%), Gaps = 17/2188 (1%)
Strand=Plus/Plus
Query 1 ATGCCGGTATCTACTCGATCTAAGGTGATGAAACAGGAGCGAAACGAGCAAGAGAACACA 60
|||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||
Sbjct 1 ATGCCGGTATCTACTCGATCCAAGGTGATGAAACAGGAGCGAAATGAGCAAGAAAACACA 60
Query 61 AATCTGAATCTTCCGTTGAGAAATCCACATCAAGGGTTGAAGGAAAAGATGAGAGCTTTG 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 AATCTGAATCTTCCGTTGAGAAATCCACATCAAGGGTTGAAAGAAAAGATGAGAGCTTTG 120
Query 121 ACTCTCTTGTACGAGCAGCAAAAGAGAGCCTCTTTCTCTCTCAGGAACCCTAATCATAAT 180
||||||||||||||||||||||||||||||||||||||||||||||| || | ||||
Sbjct 121 ACTCTCTTGTACGAGCAGCAAAAGAGAGCCTCTTTCTCTCTCAGGAA-CC----C-TAAT 174
Query 181 CAGTCTCCGAAACCTGAAGATCAGAGATTCAAGACTCAGCTGCTTGATTCTTCCAAGAAA 240
|||||||| ||||| ||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 175 CAGTCTCCTAAACCCGAAGACCAGAGATTCAAGACTCAGCTGCTTGATTCTTGCAAGAAA 234
Query 241 GGAGACAGATTTCATCGCCTGGACGGTAAAGATTCTACCTTTGTTGAAGAAGATACCAAA 300
||||||||||||||||||| |||||||||||||||| ||| |||||||||| ||||||
Sbjct 235 GGAGACAGATTTCATCGCCAAGACGGTAAAGATTCTAAATTTATTGAAGAAGAAACCAAA 294
Query 301 GAGAACAATGTATTTGAAGCAGATCGGATTTTTGGGGTTAGTTCGGTTCCTGTTAAGCC- 359
|||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 295 GAGAACAATGTATTCGAAGCAGATCGGATTTTCGGGGTTAATTCGGTTCCTGTTAAGCCT 354
Query 360 --TAGTGGTGTGATTAGGAAGCTTTCAATGGGTAATGGAGCTAGAAACGTTTCGGAAGCT 417
||||||||||||||| ||||| |||||||||| |||||||||||||||| | ||||||
Sbjct 355 AGTAGTGGTGTGATTAGAAAGCTCTCAATGGGTATTGGAGCTAGAAACGTTACAGAAGCT 414
Query 418 GAGAAATTGGAGAGTCTTAATGCTTCTGTGAGTCGGATTTTGGTGTTTGTTAGGCTTAGA 477
|| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 415 GAAAAATTGGATAGTCTTGATGCTTCTGTGAGTCGGATTTTGGTGTTTGTTAGGCTTAGA 474
Query 478 CCAATGGGGAAAAAGGAAAGAGAGAATGGGTCAAGGTGTTGTGTCAAGGTTTTGAATAAA 537
|||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||
Sbjct 475 CCAATGGGGAAAAAGGAAAGAGAGAATGGGGCAAGATGTTGTGTCAAGATTTTGAATAAA 534
Query 538 AGAGATGTTTACCTAACGGAGTTTACGAATGAGAATGATTACCTTAGGCTTAAGAGGCTC 597
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 535 AGAGATGTTTATCTAACGGAGTTTACGAATGAGAACGATTACCTTAGGCTTAAGAGGCTC 594
Query 598 CGTGTTCGTCATTTCACTTTTGATTCTTCATTTCCTGAAACTACCACACAACAAGAGGTT 657
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 595 CGTGTTCGTCATTTCACTTTTGATTCTTCATTTCCTGAAACTACAACACAACAAGAGGTT 654
Query 658 TATTCCACCACAACAGGAGATCTTGTTGAAGCAGTTCTTGAAGGAAGAAATGGTTCAGTT 717
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 655 TATTCCACCACAACAGGAGATCTTGTTGAAGCAGTTCTTGAAGGAAGAAATGGTTCGGTT 714
Query 718 TTCTGCTACGGTGCTACGGGAGCAGGCAAGACTTATACGATGTTAGGGACAATGGAGAAT 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 TTCTGCTACGGTGCTACGGGAGCAGGCAAGACTTATACGATGTTAGGGACAATGGAGAAT 774
Query 778 CCAGGTGTAATGGTTCTAGCAATCAAAGATTTGTTTGCTAAAGTTAGACAGAGAAGCTTA 837
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 CCAGGTGTTATGGTTTTAGCAATCAAAGATTTGTTTGCTAAAGTTAGACAGAGAAGCTTA 834
Query 838 GATGGGAACCATGTTGTTCATCTTTCTTATCTTGAGGTTTATAATGAAACTGTTAGAGAT 897
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 835 GATGGGAACCATGTTGTTCATCTTTCTTATCTTGAGGTTTATAATGAAACTGTTCGAGAT 894
Query 898 TTGCTTTCACCTGGTAGACCTCTCATTCTCCGTGAAGATAAGCAGGGAATTGTGGCTGCT 957
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 895 TTGCTTTCACCTGGTAGACCTCTCATTCTCCGCGAAGATAAGCAGGGAATTGTGGCTGCT 954
Query 958 GGTCTCACTCAATATAGAGCTTACTCAACAGATGAGGTTATGGCTTTGCTTCAAAGGGGA 1017
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 955 GGTCTCACTCAATATAGAGCTTACTCAACAGATGAGGTTATGGCTTTGCTCCAAAGGGGA 1014
Query 1018 AATCAAAACAGAACTACCGAGCCTACTCGTTGCAATGAAACATCTTCTCGCTCACATGCC 1077
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1015 AATCAAAACAGAACTACTGAGCCAACTCGTTGCAATGAAACATCTTCTCGCTCACACGCC 1074
Query 1078 ATCCTTCAGGTAATAGTGGAGTATAAGACTAGAGATGCTTCCATGAATATCATCAGCCGG 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 ATCCTTCAGGTAATAGTGGAGTATAAGACTAGAGATGCTTCCATGAATATCATCAGCCGG 1134
Query 1138 GTAGGAAAGCTATCTCTCATTGATCTTGCGGGTTCTGAAAGAGCGCTAGCAACTGATCAA 1197
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1135 GTAGGAAAGCTATCTCTCATTGATCTTGCCGGTTCTGAAAGAGCGCTAGCAACTGATCAA 1194
Query 1198 AGGACGCTCAGATCACTGGAAGGTGCAAACATAAACAGATCACTTCTTGCATTAAGTAGT 1257
||||| ||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||
Sbjct 1195 AGGACACTCAGATCACTGGAAGGAGCAAATATAAACAGATCACTTCTCGCATTAAGTAGT 1254
Query 1258 TGCATTAACGCGCTTGTGGAAGGCAAGAAACATATTCCTTACAGAAACTCAAAGCTCACA 1317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 TGCATTAACGCGCTTGTGGAAGGCAAGAAACATATTCCTTACAGAAACTCAAAGCTCACA 1314
Query 1318 CAACTACTCAAAGACTCACTAGGCGGCTCGTGTAACACGGTGATGATTGCTAATATAAGT 1377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 CAACTACTCAAAGACTCACTAGGCGGCTCGTGTAACACGGTGATGATTGCTAATATAAGT 1374
Query 1378 CCAAGCAGTCAATCTTTTGGTGAAACACAAAACACTCTCCATTGGGCTGATCGAGCCAAG 1437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1375 CCAAGCAGTCAATCTTTTGGTGAAACACAAAACACTCTCCATTGGGCTGATCGAGCCAAG 1434
Query 1438 GAGATTCGTGTGAAGGAATGTGAAGTAAATGAAGAGGTGGTTCAAGTGGGTGAAGAAGAA 1497
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 1435 GAGATTCGTGTGAAGGGATGTGAAGTAAATGAAGAGGTGGTTCAAACGGGTGAAGAAGAC 1494
Query 1498 GGAGCTGATCAGGCTAAGCTTTTGTTAGAACTTCAAAAAGAGAA-TAGTGAATTGCGTGT 1556
|| ||||||||||| ||||| |||||||| |||||||||||||| | |||||||||||||
Sbjct 1495 GGGGCTGATCAGGCCAAGCTCTTGTTAGAGCTTCAAAAAGAGAACT-GTGAATTGCGTGT 1553
Query 1557 CCAGCTAGCAAAGCAGCAGCAAAAGCTTTTGACTCTACAAGCAGAGAACATAGCCGCTGC 1616
|||||| || |||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 1554 CCAGCTCGCGAAGCAGCAGCAAAAGCTTTTGACTCTTCAAGCAGAGAACTTAGCCGCTGC 1613
Query 1617 TAATAACAACAACAACA------TTTCTCTGACACCTCCATCAATCTCATCTCTTATGAC 1670
|| |||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 1614 TACTAACAACAACAACAACAACATTTCTCTGACACCTCCATCAATCTCATCTCTAATGAC 1673
Query 1671 TCCACCGTCTGCATTAACAGCTCAGCAGAAGAAGAAACCAAGGCATTCGTTGTTATCAGG 1730
|||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1674 TCCACCATCTGCGTTAACAGCTCAGCAGAAGAAGAAACCAAGGCATTCATTGTTATCAGG 1733
Query 1731 GACATGTTTCACACCAGAATCATTGAAAAGGACAAAAGCAGAAGAAGCTGTGAAGGAACT 1790
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1734 GACATGTTTCACACCAGAATCATCCAAAAGGACAAAAGCAGAAGAAGCTGTGAAGGAACT 1793
Query 1791 TCAGCTGACTGTTAAGGCATTGAAGATGGAGATGGAGAGAATGAAGAGGGAACATGGTTT 1850
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1794 TCAGCTGACTGTAAAGGCATTAAAGATGGAGATGGAGAGAATGAAGAGGGAACATGGGTT 1853
Query 1851 GCAGATGAAGAAGCAAAAAGACGAATTAATGAAAGATCTTTGTAGTAGAAAGAGCGAGAA 1910
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1854 GCAGATGAAGAAGCAAAAAGAAGAATTAATGAAAGATCTTTGTAGTAGAAAGAGCGAGAA 1913
Query 1911 AACTCCAGAAAGATGCAAAGAAACAAGGAGGATTGTCACAAGAGGGAGCTTGAGACCAAA 1970
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1914 AACTCCAGAAAGAGGCAAAGAAACAAGGAGGATTGTCACAAGAGGGAGCTTGAGACCAAA 1973
Query 1971 GGAGAAGGAAAAGGAACTGAAAAGTCCGAGTCATCGGTTTGCATCTCCAGTTGCAGCAGC 2030
||||||||| ||||| |||||||| |||||||| |||||||||||||||| |||||||||
Sbjct 1974 GGAGAAGGAGAAGGAGCTGAAAAGCCCGAGTCACCGGTTTGCATCTCCAGCTGCAGCAGC 2033
Query 2031 TAAAAAGAGAAGCTTTTGGGACATAACCGTTGCTAATACTAGTCCTGCGTTGGATAGAAG 2090
|||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 2034 TAAAAAAAGAAGCTTTTGGGACATAACCGTAGCTAATACTAGTCCTGCGTCGGATAGAAG 2093
Query 2091 GAAAACGAGAAGCCACGGTCTTGTTCATCAAGAAGCTCCTTCAAAACTGCTTCAGCCCGG 2150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2094 GAAAACGAGAAGCCACGGTCTTGTTCATCAAGAAGCTCCTTCAAAACTGCTTCAGCCCGG 2153
Query 2151 GTTTGCTCGTCCACACATGAAGCATTAA 2178
||||||||||||||||||||||||||||
Sbjct 2154 GTTTGCTCGTCCACACATGAAGCATTAA 2181
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87798014725
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5