BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18570.1
Length=1654
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472077 jgi|Araly1|472077|fgenesh2_kg.1__2031__AT1G18570.1 1881 0.0
Ahg492106 jgi|Araly1|492106|fgenesh2_kg.7__1539__AT4G26930.1 78.7 1e-13
> Ahg472077 jgi|Araly1|472077|fgenesh2_kg.1__2031__AT1G18570.1
Length=1467
Score = 1881 bits (1018), Expect = 0.0
Identities = 1168/1239 (94%), Gaps = 15/1239 (1%)
Strand=Plus/Plus
Query 293 GTTTCACTTGAGAACAACCCCCTTTGAACTCGATCAAGAAAG-CTAAG----TTTGAAGA 347
|||| ||||||||||||||||||||||||||||||||| ||| || || ||||||||
Sbjct 173 GTTTTACTTGAGAACAACCCCCTTTGAACTCGATCAAG-AAGCCTGAGTTTCTTTGAAGA 231
Query 348 ATCAAGAATGGTGCGGACACCGTGTTGCAAAGCTGAACTAGGGTTAAAGAAAGGAGCTTG 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 ATCAAGAATGGTGCGGACACCGTGTTGCAAAGCTGAACTAGGGTTAAAGAAAGGAGCTTG 291
Query 408 GACTCCCGAGGAAGATCAGAAGCTTCTCTCTTACCTTAACCGCCACGGTGAAGGTGGATG 467
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 292 GACTCCCGAGGAAGATCAGAAGCTTCTCTCTTACCTCAACCGTCACGGTGAAGGTGGATG 351
Query 468 GCGAACTCTCCCCGAAAAAGCTGGACTCAAGAGATGCGGCAAAAGCTGCAGACTGAGATG 527
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 352 GCGAACTCTCCCCGAAAAAGCTGGACTCAAGAGGTGCGGCAAAAGCTGCAGACTGAGATG 411
Query 528 GGCCAATTATCTTAGACCTGACATCAAAAGAGGAGAGTTCACTGAAGACGAAGAACGTTC 587
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 412 GGCTAATTATCTTAGACCTGACATCAAAAGAGGAGAGTTCACTGAAGACGAAGAATGTTC 471
Query 588 AATCATCTCTCTTCACGCCCTTCACGGCAACAAATGGTCTGCTATAGCTCGTGGACTACC 647
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 472 TATCATCTCTCTTCACGCCCTTCACGGCAACAAATGGTCCGCTATAGCTCGTGGATTACC 531
Query 648 AGGAAGAACCGATAACGAGATCAAGAACTACTGGAACACTCATATCAAAAAACGTTTGAT 707
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 532 AGGAAGAACCGATAACGAGATCAAGAACTACTGGAACACTCATATCAAGAAACGTTTGAT 591
Query 708 CAAGAAAGGTATTGATCCAGTTACACACAAGGGCATAACCTCCGGTACCGACAAATCAGA 767
||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||
Sbjct 592 TAAGAAAGGTATTGATCCGGTTACACACAAGGGCTTAAACTCCGGTACCGACAAATCAGA 651
Query 768 AAACCTCCCGGAGAAACAAAATGTTAATCTGACAACTAGTGACCATGATCTTGATAATGA 827
||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||
Sbjct 652 AAACCTCCCGGAGAAACAAAACGTTAATCAGACAACTAGTGACGATGATCTTGATAATGA 711
Query 828 CAAGGCGAAGAAGAACAACAAGAATTTTGGATTATCATCGGCTAGTTTCTTGAACAAAGT 887
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||
Sbjct 712 CAAGGCGAAGAAGAACAACAAGAATTCCGGATTATCATCGGCTAGGTTCTTGAACAGAGT 771
Query 888 AGCTAATAGGTTCGGAAAGAGAATCAATCAGAGTGTTCTGTCTGAGATTATCGGAAGTGG 947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 AGCTAATAGGTTCGGAAAGAGAATCAATCAGAGTGTTCTGTCTGAGATTATCGGAAGTGG 831
Query 948 AGGCCCACTTGCTTCTACTAGTCACACTACTAATACTACAACTACAAGTGTTTCCGTTGA 1007
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 832 AGGCCCACTTGCTACTACTAGTCACACTACTACTACTACAACTACAAGTGTTTCCGTTGA 891
Query 1008 CTCTGAATCAGTTAAGTCAACGAGTTCTTCCTTCGCACCAACCTCGAATCTTCTCTGCCA 1067
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 892 CTCTGAATCAGATAAGTCAACGAGTTCTTCCTTCGCACCAACCTCAAATCTTCTCTGCCA 951
Query 1068 TGGGACCGTTGCAACAACACCAGTTTCATCGAACTTTGACGTTGATGGTAACGTTAATCT 1127
||||||||||||||||||||| || ||||||||||||||||||||||||| | ||||||
Sbjct 952 TGGGACCGTTGCAACAACACCTGTGTCATCGAACTTTGACGTTGATGGTAGCCTTAATCC 1011
Query 1128 GACGTGTTCTTCGTCCACGTTCTCTGATTCCTCCGTTAACAATCCTCTAATGTACTGCGA 1187
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1012 GACGTCTTCTTCGTCCACGTTCTCTGATGCCTCCGTTAACAATCCTCTAATGTACTGCGA 1071
Query 1188 TAATTTCGTTGGTAATAACAACGTTGATGATGAGGATACTATCGGGTTCTCC-ACATTTC 1246
|||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||
Sbjct 1072 TAATTTCGTTGGTAATAATAACGTTGATGATGAGGATACTATCGGGTTC-CCGACATTTC 1130
Query 1247 TGAATGATGAAGATTTCATGATGTTGGAGGAGTCTTGTGTTGAAAACACTGCGTTCATGA 1306
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1131 TGAATGATGAAGATTTCATGATGTTGGAGGAATCTTGTGTTGACAACACTGCGTTCATGA 1190
Query 1307 AAGAACTTACGAGGTTTCTTCACGAGGATGAAAACGACGTCGTTGATGTGACGCCGGTCT 1366
||||||||||||| |||||||| ||||||||||| ||||||||||||||| |||||||||
Sbjct 1191 AAGAACTTACGAGATTTCTTCATGAGGATGAAAATGACGTCGTTGATGTGCCGCCGGTCT 1250
Query 1367 ATGAACGTCAAGACT-TGTTTGACGAAATTGATAACTATTTTGGATGAGTGAAACTCATA 1425
||||||||| ||| | |||||||||| |||||||||||||||||||||| ||| ||| |
Sbjct 1251 ATGAACGTCGAGA-TATGTTTGACGAGATTGATAACTATTTTGGATGAGAGAATCTCCTG 1309
Query 1426 ATCGATGAATCCCACGTGACCATGTCAATATGATGTCTATGGATATGTTACCTtgatgat 1485
||||| |||||||| | | |||||||||||||||||||||| ||||||||||| |||||
Sbjct 1310 GTCGATCAATCCCACCTAATCATGTCAATATGATGTCTATGGCTATGTTACCTTAATGAT 1369
Query 1486 gttgatggtaataataataaataatgatggtgatgatga 1524
| |||| ||||| || ||||||||||| ||||| |||
Sbjct 1370 GATGAT---AATAA-AA-AAATAATGATGATGATGGTGA 1403
Score = 204 bits (110), Expect = 2e-51
Identities = 130/139 (94%), Gaps = 3/139 (2%)
Strand=Plus/Plus
Query 129 CGATCTCGAGTATCACAAAAGAACAAGATGTCTATTCGAAGAATCTACCGATGTCTGAAT 188
|||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 41 CGATCTCGAGTA-CGCAAAAGAACAAGATGTCTATTCGAAGAATCTACAGATGTCTGAAT 99
Query 189 TCTTTAATCAAAAGATCTTGTGCTCAATCTCTATGATCATACGCCCCATTTCACACTTTG 248
||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||
Sbjct 100 TCTTTAATCAAAAGATCCTGTGCTCAATCTCTATGATCATTCGCCCCATTTCTCACTTTG 159
Query 249 TTTCACCTCT-CAGttttt 266
||||||| || ||| ||||
Sbjct 160 TTTCACC-CTTCAGGTTTT 177
Score = 75.0 bits (40), Expect = 2e-12
Identities = 40/40 (100%), Gaps = 0/40 (0%)
Strand=Plus/Plus
Query 63 CTCTCTTTGTGGTAAGAAAACAGAGCAACTAGATCTCTCT 102
||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTCTCTTTGTGGTAAGAAAACAGAGCAACTAGATCTCTCT 40
> Ahg492106 jgi|Araly1|492106|fgenesh2_kg.7__1539__AT4G26930.1
Length=1149
Score = 78.7 bits (42), Expect = 1e-13
Identities = 67/78 (86%), Gaps = 6/78 (8%)
Strand=Plus/Plus
Query 612 CGGCAACAAATGGTCT-GCTATAGCTCG-TGGA-CTACCAGGAAGAACCGATAACGAGAT 668
||||||||||||| || || || ||| | | | ||||||||||||| |||||||||||
Sbjct 276 CGGCAACAAATGGGCTCGC-ATGGCT-GCT-CAGTTACCAGGAAGAACAGATAACGAGAT 332
Query 669 CAAGAACTACTGGAACAC 686
||||||||||||||||||
Sbjct 333 CAAGAACTACTGGAACAC 350
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62010918860
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5