BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18580.1
Length=2128
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312807 jgi|Araly1|312807|fgenesh1_pm.C_scaffold_1001587 2567 0.0
> Ahg312807 jgi|Araly1|312807|fgenesh1_pm.C_scaffold_1001587
Length=1617
Score = 2567 bits (1390), Expect = 0.0
Identities = 1544/1619 (95%), Gaps = 7/1619 (0%)
Strand=Plus/Plus
Query 281 ATGAGGCGGT-G--GCCGGTGGATCACCGGCGGCGAGGTAGAAGGAGATTGTCGAGTTGG 337
|||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAGGCGTTGGCAGCCGGTGGATCACCGGCGGCGAGGTAGAAGGAGATTGTCGAGTTGG 60
Query 338 ATATGGTTTCTCCTTGGTTCTTTCTCTGTCGCTGGTTTAGTTCTCTTCATCGTTCAGCAT 397
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 61 ATATGGTTTCTCCTTGGTTCTTTCTCTGTCGCTGGATTAGTTCTCTTCATGGTTCAGCAT 120
Query 398 TATCACCATCAACAAGATCCATCCCAGCTTTTACTTGAGAGAGACACGAGAACCGAAATG 457
||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||
Sbjct 121 TATCACCATCAACAAGATCCATCTCAGCTTTTAGTTGAGAGAGACACGAGAACTGAAATG 180
Query 458 GTATCTCCTCCCCATTTAAACTTCACGGAAGAGGTCACAAGTGCTTCCTCCTTCTCTAGG 517
||||| ||| ||| |||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 181 GTATCCCCTACCCGTTTAAACTTCACAGAAGAGGTCACAAGTGCTTCCTCATTCTCTAGG 240
Query 518 CAGTTAGCAGAGCAAATGACACTTGCCAAAGCTTATGTGTTTATAGCTAAAGAGCATAAT 577
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||
Sbjct 241 CAGTTAGCAGAGCAAATGACACTTGCCAAGGCTTATGTTTTTATAGCTAAAGAGCACAAT 300
Query 578 AATCTTCATTTAGCTTGGGAATTGAGTTCTAAGATCAGAAGTTGTCAGCTTTTGCTTTCC 637
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 301 AATCTTCATTTAGCTTGGGAATTGAGTTCTAAGATCAGAAGTTGTCAGCTTCTGCTCTCG 360
Query 638 AAAGCAGCTATGAGAGGACAACCTATTTCGTTTGATGAGGCTAAACCGATTATTACTGGT 697
|||||||| ||||||||||||||||||||||| |||||| | ||||||||||||| ||||
Sbjct 361 AAAGCAGCAATGAGAGGACAACCTATTTCGTTAGATGAGTCAAAACCGATTATTAGTGGT 420
Query 698 CTATCAGCTCTTATCTACAAGGCTCAAGATGCACATTATGATATTGCCACCACTATGATG 757
||||||||||||||||| |||||||||||||||||||| || || |||||||| ||||||
Sbjct 421 CTATCAGCTCTTATCTATAAGGCTCAAGATGCACATTACGACATAGCCACCACAATGATG 480
Query 758 ACCATGAAATCTCACATCCAAGCACTTGAAGAGCGTGCAAATGCAGCTACTGTTCAGACC 817
||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| |||
Sbjct 481 ACCATGAAATCTCACATCCAAGCCCTTGAAGAACGTGCAAATGCAGCTACCGTTCAAACC 540
Query 818 ACAATATTTGGGCAATTGGTTGCTGAGGCATTACCAAAGAGCCTCCACTGTTTGACGATA 877
||||| |||||||| ||||||||||||||| ||||||||||| |||||||| ||| |||
Sbjct 541 ACAATCTTTGGGCAGTTGGTTGCTGAGGCACTACCAAAGAGCATCCACTGTCTGATTATA 600
Query 878 AAGCTCACATCTGATTGGGTAACAGAGCCATCTCGCCATGAACTGGCAGATGAGAACAGA 937
|||||||||||||||||| ||| ||||||||||||||||||||| |||||||| ||||||
Sbjct 601 AAGCTCACATCTGATTGGTTAATAGAGCCATCTCGCCATGAACTAGCAGATGAAAACAGA 660
Query 938 AACTCACCTAGACTTGTCGACAACAACCTCTACCACTTCTGCATCTTCTCGGACAACGTG 997
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 661 AACTCACCTAGACTTGTCGACAACAACCTCTACCATTTCTGCATCTTCTCGGACAACGTT 720
Query 998 ATTGCCACCTCGGTTGTTGTTAATTCAACTGTCTCGAATGCTGATCATCC-AAAGCAGCT 1056
|||||||||||||||||||||||||| |||||||| ||||||||||| || ||| |||||
Sbjct 721 ATTGCCACCTCGGTTGTTGTTAATTCGACTGTCTCAAATGCTGATCACCCGAAA-CAGCT 779
Query 1057 TGTTTTCCACATAGTGACGAATCGAGTGAGCTACAAAGCTATGCAGGCCTGGTTTCTAAG 1116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 780 TGTTTTCCACATAGTGACGAATCGAGTGAGCTACAAAGCTATGCAGGCCTGGTTTCTGAG 839
Query 1117 TAATGACTTCAAGGGCTCAGCAATAGAGATCAGGAGCGTAGAGGAGTTTTCTTGGTTGAA 1176
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 840 TAATGACTTCAAGGGCTCAGCTATAGAGATCAGGAGCATAGAGGAGTTTTCTTGGTTGAA 899
Query 1177 TGCTTCATATTCTCCTGTTGTTAAGCAACTGCTGGACACAGATGCAAGAGCTTACTATTT 1236
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TGCTTCGTATTCTCCTGTTGTTAAGCAACTGCTGGACACAGATGCAAGAGCTTACTATTT 959
Query 1237 CGGGGAACAGACAAGTCAAGATACGATTTCCGAGCCAAAAGTGAGGAACCCAAAGTACTT 1296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 CGGGGAACAGACAAGTCAAGATACGATTTCCGAGCCAAAAGTGAGGAACCCAAAGTACTT 1019
Query 1297 GTCATTACTGAACCATCTCAGATTCTACATTCCGGAGATCTATCCACAGCTAGAGAAGAT 1356
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1020 GTCATTACTGAACCATCTCAGATTCTACATTCCTGAGATCTATCCGCAGCTAGAGAAGAT 1079
Query 1357 TGTTTTCCTAGACGATGATGTTGTTGTTCAGAAAGATTTGACTCCACTCTTCTCCTTGGA 1416
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1080 CATTTTCCTAGACGATGATGTTGTTGTTCAGAAAGATTTGACACCACTCTTCTCCTTGGA 1139
Query 1417 TCTGCATGGAAACGTCAATGGAGCTGTGGAAACATGTCTTGAAGCCTTTCACCGATATTA 1476
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1140 TCTGCACGGAAACGTCAATGGAGCTGTGGAAACATGTCTTGAAGCCTTTCACCGTTATTA 1199
Query 1477 CAAGTATCTAAATTTCTCGAACCCACTCATCAGCTCAAAGTTCGACCCACAAGCATGTGG 1536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 CAAGTATCTAAATTTCTCGAACCCACTCATCAGCTCAAAGTTCGACCCACAAGCATGTGG 1259
Query 1537 ATGGGCTTTTGGTATGAACGTTTTTGATCTGATCGCTTGGAGGAATGCAAACGTGACTGC 1596
|||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1260 ATGGGCGTTTGGTATGAACGTTTTTGATCTGATCGCTTGGAGGAAAGCGAACGTGACTGC 1319
Query 1597 TCGGTACCATTACTGGCAAGATCAGAACAGAGAACGAACGCTTTGGAAACTCGGGACACT 1656
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1320 TCGGTACCATTACTGGCAAGAGCAGAACAGAGAACGAACGCTTTGGAAACTCGGGACACT 1379
Query 1657 CCCTCCAGGTCTACTATCTTTCTATGGTCTCACAGAGCCACTGGACAGAAGATGGCATGT 1716
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1380 CCCTCCAGGTCTACTGTCTTTCTATGGTCTCACAGAGCCACTGGATAGAAGATGGCATGT 1439
Query 1717 CTTGGGTTTAGGTTACGATGTGAACATCGATAACCGTCTGATCGAAACAGCAGCTGTGAT 1776
|||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1440 CTTGGGCTTAGGTTACGATGTGAACATCGATAACCGTCTGATAGAAACCGCAGCTGTGAT 1499
Query 1777 TCACTATAATGGTAACATGAAGCCTTGGCTAAAGCTGG-CTATTGGTAGGTATAAACCTT 1835
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 1500 TCACTATAATGGTAACATGAAGCCTTGGCTAAAGCTGGGC-ATTGGTAGGTATAAACCTT 1558
Query 1836 TCTGGTTAAAGTTTTTGAACTCGAGCCATCCTTATTTACAAGATTGTGTCACAGCTTAA 1894
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 TCTGGTTAAGGTTTTTGAACTCGAGCCATCCTTATTTACAAGATTGTGTCACAGCTTAA 1617
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80065694990
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5