BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18590.1
Length=1363
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472079 jgi|Araly1|472079|fgenesh2_kg.1__2033__AT1G18590.1 1847 0.0
Ahg909036 jgi|Araly1|909036|Al_scaffold_0002_2117 763 0.0
> Ahg472079 jgi|Araly1|472079|fgenesh2_kg.1__2033__AT1G18590.1
Length=1266
Score = 1847 bits (1000), Expect = 0.0
Identities = 1131/1194 (95%), Gaps = 10/1194 (1%)
Strand=Plus/Plus
Query 4 AACGAGTATTAATCTCTTCATTACATAGCCAAAAAGAA-AACACTCTCTATAATGGAATC 62
||||||||| |||||||| || ||||||||||||| || || |||||||||||||||| |
Sbjct 1 AACGAGTATCAATCTCTTAATCACATAGCCAAAAA-AATAA-ACTCTCTATAATGGAAGC 58
Query 63 CAAAACCATAAACGACGTCGTCGTATCAGAGTCAAATCACGAGTTAGCATCTTCGTCGCC 122
|||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 59 AAAAACCATAAACGACGCCGTCGTATCAGAGTCGAATCACGAGTTAGCATCTTCGTCGCC 118
Query 123 ATCAGAATTTGAGAAGAACCAGAAACATTACCAAGAAATCATCGCAACTCTTCCTCACAA 182
||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 119 ATCAGAATTCGAGAAGAACCAGAAACATTACCAAGAAATCATCGCTACGCTTCCTCACAA 178
Query 183 AGATGGCTGGAGACCAAAAGATCCGTTCGTTGAGTACGGTGGTCACTGGTGGCTACAACC 242
|||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 179 AGATGGATGGAGACCAAAAGATCCTTTCGTCGAGTACGGTGGTCACTGGTGGCTACAACC 238
Query 243 TCTTCTTGAAGGTTTACTTCACGCCCAGAAGTTCTTCAAGGCACGTCCCAATGATTTCTT 302
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 239 TCTCCTTGAAGGTTTACTTCACGCCCAGAAGTTCTTCAAGGCACGACCCAATGATTTCTT 298
Query 303 CGTCTGCAGCTACCCAAAAACCGGCACGACTTGGCTCAAAGCCTTAACTTTCGCAATCGC 362
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 299 CGTCTGCAGCTACCCAAAAACCGGCACCACTTGGCTCAAAGCCTTAACTTTCGCAATCGC 358
Query 363 AAATCGCTCCAAGTTCGACGTTTCAACAAACCCTCTTCTCAAACGTAATCCACACGAGTT 422
||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||
Sbjct 359 GAATCGCTCCAAGTTCGACGATTCAACAAACCCTCTTCTCAAACGCAACCCACACGAGTT 418
Query 423 TGTGCCTTACATCGAAATCGACTTCCCGTTTTTCCCAAGCGTTGATGTTCTTAAAGACGA 482
|||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 419 TGTGCCTTACATAGAAATCGATTTCCCGTTTTTCCCAAGTGTTGATGTTCTTAAAGACGA 478
Query 483 AGGAAACACGCTTTTCTCGACTCATATCCCTTATGATCTCTTACCTGAATCAGTTGTGAA 542
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 479 AGGAAACACGCTTTTCTCGACTCATATCCCTTACGATCTCTTGCCTGAATCAGTTGTGAA 538
Query 543 ATCTGGTTGCAAGATTGTTTACATATGGAGAGACCCAAAGGACACGTTTGTGTCGATGTG 602
|| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 539 GTCCGGTTGCAAGATTGTTTACATATGGAGAGACCCAAAGGACACGTTTGTGTCCATGTG 598
Query 603 GACTTTTGCTCACAAGGAGAGATCACAACAAGGACCAGTGGTTAGCATTGAGGAAGCTTT 662
|||||||||||||||||||||||||||||||||| || | ||||| |||||||||||||
Sbjct 599 GACTTTTGCTCACAAGGAGAGATCACAACAAGGATCACTCATTAGCCTTGAGGAAGCTTT 658
Query 663 TGATAAGTACTGTCAAGGTTTATCAGCTTACGGTCCTTATCTTGATCATGTTTTAGGGTA 722
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 659 TGATAAGTACTGTCAAGGTTTATCTGCTTACGGTCCTTATCTTGATCATGTTTTAGGGTA 718
Query 723 TTGGAAAGCTTACCAAGCAAACCCGGATCAGATTTTGTTTCTCAAGTATGAGACAATGAG 782
|||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||
Sbjct 719 TTGGAAAGCTTACCAAGCAAACCCAAATCAGATTTTGTTTCTCAAGTATGAAACTATGAG 778
Query 783 AGCTGATCCATTGCCTTATGTGAAGAGATTAGCTGAGTTTATGGGTTATGGGTTCACGAA 842
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 779 AGCTGATCCATTGCCGTATGTGAAGAGATTAGCTGAGTTTATGGGTTATGGATTCACAAA 838
Query 843 GGAGGAAGAGGAGGGAAATGTTGTTGAGAAAGTAGTGAAGCTTTGTAGCTTTGAGACTTT 902
|||||||||||||| ||| |||||||||||||| |||||||||||||||||||||| |||
Sbjct 839 GGAGGAAGAGGAGGAAAAGGTTGTTGAGAAAGTTGTGAAGCTTTGTAGCTTTGAGAATTT 898
Query 903 GAAGAATCTTGAAGCTAACAAAGGTGAGAAAGATAGAGAAGATCGTCCTGCTGTTTATGC 962
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 899 GAAGAATCTTGAAGCTAATAAAGGTGAGAAAGATAGAGAAGATCGTCCTGCTGTTTATGC 958
Query 963 CAACAGTGCGTATTTCAGGAAAGGGAAAGTTGGGGATTGGCAGAATTATCTGACTCCGGA 1022
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 CAACAGTGCGTATTTCAGGAAAGGGAAAGTTGGGGATTGGCAGAATTATCTGACTCCGGA 1018
Query 1023 GATGGTGGCTCGTATTGATGGTTTGATGGAAGAGAAGTTTAAAGGAACTGGCTTTCTTTC 1082
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 1019 GATGGTGGCTCGTATTGATGGTTTGATGGAAGAGAAGTTCAAAGGAACTGGCTTTCTTAC 1078
Query 1083 TTCAAA-ATCATGAATGTGATCTTCTTTTGTCTTGTTTTCGAGCTATGAATGTCTGATTC 1141
|| ||| ||||| ||||||||||||||||||||||||||||| |||||| ||||| ||||
Sbjct 1079 TT-AAACATCATTAATGTGATCTTCTTTTGTCTTGTTTTCGAACTATGACTGTCTAATTC 1137
Query 1142 TTC-TGATCCTTT-TGCTGGTT-ATAGCATAAGTTGCTTTTGTTTACTAGTATA 1192
| | ||||| ||| |||||||| ||||||||||||||||||||||| |||||||
Sbjct 1138 T-CATGATC-TTTATGCTGGTTTATAGCATAAGTTGCTTTTGTTTATTAGTATA 1189
> Ahg909036 jgi|Araly1|909036|Al_scaffold_0002_2117
Length=1041
Score = 763 bits (413), Expect = 0.0
Identities = 802/983 (82%), Gaps = 54/983 (5%)
Strand=Plus/Plus
Query 125 CAGAATTTGAGAAGAACCAGAAACATTACCAAGAAATCATCGCAAC-TCTTCCTCACAAA 183
|||| || |||||||| ||||||| ||||||||| | ||| | || | |||||||| |
Sbjct 71 CAGAGTTCGAGAAGAATCAGAAACGGTACCAAGAACTAATCTCCACGT-TTCCTCAC-GA 128
Query 184 G-ATGGCTGGAGACCAAAAGATCCGTTCG-TTGAGTACGGTGGTCACTGGTGGCTACAAC 241
| | ||||||||||| ||||| || | | | ||||| |||||| |||||||||||| |
Sbjct 129 GAAAGGCTGGAGACCGAAAGAGCCCCT-GATCGAGTATGGTGGTTACTGGTGGCTACCGC 187
Query 242 CTCTTCTTGAAGGTT-TACTTCACGC-CCAGAAGTTC-TTCAAGGCACGTCCCAATGATT 298
|||| || ||||||| || ||||||| | || ||||| ||||| || || |||| ||| |
Sbjct 188 CTCTCCTCGAAGGTTGTA-TTCACGCGCAAG-AGTTCTTTCAA-GCGCGACCCAGTGACT 244
Query 299 TCTTCGTCTGCAGCTACCCAAAAACCGGCACGACTTGGCTCAAAGCCTTAACTTTCGCAA 358
|| ||||||| ||||||||||| || || || ||||||||||||||| | |||||||| |
Sbjct 245 TCCTCGTCTGTAGCTACCCAAAGACAGGTACCACTTGGCTCAAAGCCCTGACTTTCGCCA 304
Query 359 TCGCAAATCGCTCCAAG-TTCGACGTTTCAACAAACCCTCTTCTCAAACGTAATCCACAC 417
| || ||||| ||| | ||||| | ||| | |||||||| || |||||||| || |||
Sbjct 305 TTGCCAATCGTTCC-CGCTTCGATGATTCCTCCAACCCTCTCCTGAAACGTAACCCTCAC 363
Query 418 GAGTTTGTGCCTTACATCGAAATCGACTTCCCGTTT-TTCCCAAG-CGTTGATGTTCTTA 475
|||||||| |||||||| || ||||| ||||| ||| ||||| | ||||||||||| |
Sbjct 364 GAGTTTGTTCCTTACATTGAGATCGATTTCCC-TTTCTTCCC-TGAAGTTGATGTTCTCA 421
Query 476 AAGACGAAGGAAACACGCT-TTTCTCGACTCATATCCCTTATGA-TCTCTTACCTGAATC 533
||||| |||| ||||| || ||| |||||||||||||| || || | | |||||||| ||
Sbjct 422 AAGACAAAGGGAACACTCTGTTT-TCGACTCATATCCCATACGAGT-TATTACCTGATTC 479
Query 534 AGTTGTGAAATCTGGTTGCAAGATTGTTTACATATGGAGAGACCCAAAGGACACGTTT-G 592
||||| ||||| ||||| ||||| |||||||| |||||||| ||||||||||| |||
Sbjct 480 GGTTGTAAAATCAGGTTGTAAGATGGTTTACATCTGGAGAGAACCAAAGGACAC-TTTCA 538
Query 593 TGTCGATGTGGACTTTTGC-TCACAAGGAGA-GATCACAACAAGGACCAGTGGTTAGC-A 649
| || |||||||| ||| | ||||||||| | || || ||| ||||| | || | | |
Sbjct 539 TCTCAATGTGGAC-TTTCCTTCACAAGGAAAGGA-CAGAACTTGGACC--T-GTCAACAA 593
Query 650 --TTGAGGAAG-CTTTTGATAAGTACTGTCAAGGTTTATCAGCTTACGGTCCTTATCTTG 706
|||||| || ||||||||| || ||||| ||| | || | ||||||||||||||||
Sbjct 594 TCTTGAGG-AGTCTTTTGATATGTTCTGTCGTGGTCTGTCTGGGTACGGTCCTTATCTTG 652
Query 707 ATCATGTTTTAGG-GTATTGGAAAGCTTACCAAGCA-AACCCGGATCAGATTTTGTTTCT 764
||||| | | || |||||||||||| ||||||| | || || |||| ||||||||| ||
Sbjct 653 ATCATATCCT-GGCGTATTGGAAAGCCTACCAAG-AGAATCCAGATCGGATTTTGTTCCT 710
Query 765 CAAGTATGAGACAATGAGAGCTGATCCATTGCCTTATGTGAAGAGAT-TAGCTGAGTTTA 823
|||||| ||||| |||||||||||||| ||||| ||||||||||| | | ||||||||||
Sbjct 711 CAAGTACGAGACTATGAGAGCTGATCCTTTGCCGTATGTGAAGAG-TCTGGCTGAGTTTA 769
Query 824 TGGGTTATGGGTTCAC-GAAGGAGGAAGAGGAGGGAA-ATGTTGTTGAGAAAGTAGTGAA 881
|||||||||| ||||| | ||||||||||| | || |||||||||||||||| |||||
Sbjct 770 TGGGTTATGGATTCACTG-CTGAGGAAGAGGA-GAAAGATGTTGTTGAGAAAGTGGTGAA 827
Query 882 GCTTTGTAGCTTT-GAGACTTTGAAGAATCTTGAAGCTAACAAAGGTGAGAAAGATAGAG 940
||||| || ||| ||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 828 TCTTTGCAG-TTTCGAGACATTGAAGAATCTTGAAGCTAACAAAGGTGAGAAAGACAGAG 886
Query 941 AAGATCGTCCTGCTGTTTATGCCAACAGTGCGTATTTCAGGAAAGGGAAAGTTGGG-GAT 999
| |||||||||| |||||| || || ||||| |||||||||||||| |||| |||| |||
Sbjct 887 AGGATCGTCCTGGTGTTTACGCGAATAGTGCCTATTTCAGGAAAGG-AAAGGTGGGAGAT 945
Query 1000 TGG-CAGAATTATCTGACTCCGGAGATGGTGGCTCGTATTGATGGTTTGATGGAAGAGAA 1058
||| || |||||||||||||||||||||| |||||||| ||||| || |||||||||||
Sbjct 946 TGGTCA-AATTATCTGACTCCGGAGATGGCAGCTCGTATCGATGGGTTAATGGAAGAGAA 1004
Query 1059 GTTTAAAGGAACTGGCTTT-CTT 1080
||||| || || || ||| |||
Sbjct 1005 ATTTAAGGGCACCGG-TTTGCTT 1026
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51008462946
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5