BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G18600.1 Length=1458 Score E Sequences producing significant alignments: (Bits) Value Ahg472080 jgi|Araly1|472080|fgenesh2_kg.1__2034__AT1G18600.1 1768 0.0 > Ahg472080 jgi|Araly1|472080|fgenesh2_kg.1__2034__AT1G18600.1 Length=1228 Score = 1768 bits (957), Expect = 0.0 Identities = 1087/1148 (95%), Gaps = 15/1148 (1%) Strand=Plus/Plus Query 181 CGAAAGCTCTCGCCTTTACATTTTCGCCAATTGTGCAAATTTACTGTTCCACAAGTTTTC 240 ||||||||||||||||| ||||||||||||||| || || | | || || | Sbjct 96 CGAAAGCTCTCGCCTTTTCATTTTCGCCAATTGGGC-AA---A-T-TT--AC------T- 140 Query 241 AAAATGAAGGCGATCTTCAACCGTAGAGTTGTCGTCGACTCATCTTCGCGTCTCACCAAG 300 |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| Sbjct 141 AAAATGAAGGCGATTTTCAACCGTAGAGTCGTCGTCGACTCATCTTCGCGTCTCACCAAG 200 Query 301 CTGCTCGCGAATCCAACTACTCATTCTCACCTGAATCGTCAAACTTTCACTTCTCTCTAT 360 |||||| |||| ||||||||||||||||||| ||||||||||||||||| ||| |||||| Sbjct 201 CTGCTCACGAACCCAACTACTCATTCTCACCCGAATCGTCAAACTTTCATTTCGCTCTAT 260 Query 361 AAACCAAACCAGAGCCGCCATTTTCGAACACACTATCTTCCTTCAAGCCCGTCGTCTCCT 420 ||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 261 AAACCGAACCAGAACCGCCATTTTCGAACACACTATCTTCCTTCAACCCCGTCGTCTCCT 320 Query 421 CCCGTGAGCCGCTTTGACCCTTCTCAGCTATGGCGATCGGAGAAAATTCGTGGGTTTTTC 480 ||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||| Sbjct 321 CCCGTGAGCCGGTTTGACCCTTCTCAGCTATGGCGATCAGAGACAATTCGTGGGTTTTTC 380 Query 481 GCGAGCGCTTTAGGGAACAAAGCTGTGAAATTGGGAAATCTCGTGGAATCCAGAGTTGGG 540 || | |||||||||||||||||| ||||||||||||||||| |||||||| ||||||||| Sbjct 381 GCAACCGCTTTAGGGAACAAAGCCGTGAAATTGGGAAATCTAGTGGAATCAAGAGTTGGG 440 Query 541 TTCATTGGTTCTCAGTTTCCCAAAAAGGGTTTCGAATTCCAGAGGTTTTCTGGGTTTCAA 600 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 441 TTCATTGGTTCTCAGTTTCCCAAAAAGGGTTTCGAATTCGAGAGGTTTTCTGGGTTTCAA 500 Query 601 AGGCGTGGCTGGAAGCATTGGCTTCAAGGGTTATCAGATCGTGACGTTGTTCTTGGGTTA 660 ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||| Sbjct 501 AGGCGTGGCTGGAAGCATTGGCTTCAAGGATTATCAGATCGTGACGTCGTTCTTGGATTA 560 Query 661 GTTATAGCTAATGCTGGTGTGTTTGTGATGTGGCGTGTTTTCAATCAACAATTCATGATG 720 ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 561 GTTATAGCTAACACTGGTGTGTTTATGATGTGGCGTGTTTTCAATCAACAATTCATGATG 620 Query 721 AATAACTTCATGATATCGTTGGATAATTTCAAGAGTGGGCGTCTACACACTCTGATAACT 780 ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 621 AATAATTTCATGATATCGTTGGATAATTTCACGAGTGGGCGTCTACACACTCTGATAACT 680 Query 781 TCAGCATTCAGTCATATTGATATTGGACATATCGTCTCAAACATGATTGGACTCTACTTT 840 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 681 TCAGCATTCAGTCATATTGATATTGGACATATCGTCTCAAACATGATTGGACTATACTTT 740 Query 841 TTTGGAACCAGTATCGCTAGAAACTTTGGTCCTCAGTTCCTTTTGAAGCTGTACCTTGCT 900 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 741 TTTGGAACCAGTATCGCTAGAAACTTTGGCCCTCAGTTCCTTTTGAAGCTGTACCTTGCT 800 Query 901 GGAGCCCTTGGGGGCTCTGTTTTCTACTTGATTCACCATGCTTATATGGCTGCAACATCG 960 ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 801 GGAGCCCTTGGTGGCTCTGTTTTCTACTTGATTCACCATGCTTATATGGCTACAACATCG 860 Query 961 CCCAAGGGTCAAGGAGCTTTCGTGAGGGATCCATCGAGAACCCCGGGACTGGGCGCGAGT 1020 |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 861 CCCAAGGGCCAAGGAGCTTTTGTGAGGGATCCATCGAGAACCCCGGGACTGGGCGCGAGT 920 Query 1021 GGAGCCGTGAATGCCATCATGCTGCTCGATATCTTCCTGCACCCAAGAGCTACTCTATAC 1080 |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| Sbjct 921 GGAGCCGTGAATGCCATCATGCTGCTGGATATCTTCCTGCACCCAACAGCTACTCTATAC 980 Query 1081 TTGGAATTTTTCATTCCAGTTCCGGCAATGTTGCTTGGTATCTTTCTCATAGGAAAAGAC 1140 || ||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||| Sbjct 981 TTAGAATTCATCATTCCAGTTCCCGCAATGTTGCTTGGTATCTTCCTCATAGGAAAAGAC 1040 Query 1141 ATTTTAAGGATAACAGAGGGGAACAGTAACATATCAGGTTCAGCTCATTTGGGAGGAGCT 1200 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1041 ATTTTAAGGATAACAGAGGGGAACAGTAACATATCAGGTTCAGCTCATTTGGGAGGAGCT 1100 Query 1201 GCAGTTGCAGCCATCGCCTGGGCTCGGATTAGGAAAGGCCGTTTCCGCTTTTGACTTGAC 1260 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1101 GCAGTTGCAGCCATCGCCTGGGCTCGGATTAGGAAAGGCCGCTTCCGCTTTTGACTTGAC 1160 Query 1261 CTTGCTTGGTTTTGGTCATCTTTAGAGAAATCTATCTATAAATGATTTAAGTAAGTTTGA 1320 ||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||| Sbjct 1161 CTTGCTTGGTTTTGGTCATCTTTAGAGAAATCTTTCTTTAAATGATTTAAGTAACTTTGA 1220 Query 1321 ATCTTTGA 1328 |||||||| Sbjct 1221 ATCTTTGA 1228 Score = 106 bits (57), Expect = 5e-22 Identities = 94/109 (86%), Gaps = 13/109 (12%) Strand=Plus/Plus Query 16 TTTCCAAAACATCAAGAAAGTTCTTACACAAAAACATCAAAGCTGCTCAATTTTGGTCTG 75 |||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TTTCCAAAACATGAAGAAAGTTCTTACACAAAAACATCAAAGCTGCTCAATTTTG----- 55 Query 76 CACATTGATTATGTGTCGGACAGAGACTATCGAGTAATACCCAGTAGTC 124 | | || |||||| |||||||||||||||||||||||||||||| Sbjct 56 -A--T--AT---GTGTCGAACAGAGACTATCGAGTAATACCCAGTAGTC 96 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54545230840 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5