BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18600.1
Length=1458
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472080 jgi|Araly1|472080|fgenesh2_kg.1__2034__AT1G18600.1 1768 0.0
> Ahg472080 jgi|Araly1|472080|fgenesh2_kg.1__2034__AT1G18600.1
Length=1228
Score = 1768 bits (957), Expect = 0.0
Identities = 1087/1148 (95%), Gaps = 15/1148 (1%)
Strand=Plus/Plus
Query 181 CGAAAGCTCTCGCCTTTACATTTTCGCCAATTGTGCAAATTTACTGTTCCACAAGTTTTC 240
||||||||||||||||| ||||||||||||||| || || | | || || |
Sbjct 96 CGAAAGCTCTCGCCTTTTCATTTTCGCCAATTGGGC-AA---A-T-TT--AC------T- 140
Query 241 AAAATGAAGGCGATCTTCAACCGTAGAGTTGTCGTCGACTCATCTTCGCGTCTCACCAAG 300
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 141 AAAATGAAGGCGATTTTCAACCGTAGAGTCGTCGTCGACTCATCTTCGCGTCTCACCAAG 200
Query 301 CTGCTCGCGAATCCAACTACTCATTCTCACCTGAATCGTCAAACTTTCACTTCTCTCTAT 360
|||||| |||| ||||||||||||||||||| ||||||||||||||||| ||| ||||||
Sbjct 201 CTGCTCACGAACCCAACTACTCATTCTCACCCGAATCGTCAAACTTTCATTTCGCTCTAT 260
Query 361 AAACCAAACCAGAGCCGCCATTTTCGAACACACTATCTTCCTTCAAGCCCGTCGTCTCCT 420
||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 261 AAACCGAACCAGAACCGCCATTTTCGAACACACTATCTTCCTTCAACCCCGTCGTCTCCT 320
Query 421 CCCGTGAGCCGCTTTGACCCTTCTCAGCTATGGCGATCGGAGAAAATTCGTGGGTTTTTC 480
||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 321 CCCGTGAGCCGGTTTGACCCTTCTCAGCTATGGCGATCAGAGACAATTCGTGGGTTTTTC 380
Query 481 GCGAGCGCTTTAGGGAACAAAGCTGTGAAATTGGGAAATCTCGTGGAATCCAGAGTTGGG 540
|| | |||||||||||||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct 381 GCAACCGCTTTAGGGAACAAAGCCGTGAAATTGGGAAATCTAGTGGAATCAAGAGTTGGG 440
Query 541 TTCATTGGTTCTCAGTTTCCCAAAAAGGGTTTCGAATTCCAGAGGTTTTCTGGGTTTCAA 600
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 441 TTCATTGGTTCTCAGTTTCCCAAAAAGGGTTTCGAATTCGAGAGGTTTTCTGGGTTTCAA 500
Query 601 AGGCGTGGCTGGAAGCATTGGCTTCAAGGGTTATCAGATCGTGACGTTGTTCTTGGGTTA 660
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||
Sbjct 501 AGGCGTGGCTGGAAGCATTGGCTTCAAGGATTATCAGATCGTGACGTCGTTCTTGGATTA 560
Query 661 GTTATAGCTAATGCTGGTGTGTTTGTGATGTGGCGTGTTTTCAATCAACAATTCATGATG 720
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 561 GTTATAGCTAACACTGGTGTGTTTATGATGTGGCGTGTTTTCAATCAACAATTCATGATG 620
Query 721 AATAACTTCATGATATCGTTGGATAATTTCAAGAGTGGGCGTCTACACACTCTGATAACT 780
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 621 AATAATTTCATGATATCGTTGGATAATTTCACGAGTGGGCGTCTACACACTCTGATAACT 680
Query 781 TCAGCATTCAGTCATATTGATATTGGACATATCGTCTCAAACATGATTGGACTCTACTTT 840
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 681 TCAGCATTCAGTCATATTGATATTGGACATATCGTCTCAAACATGATTGGACTATACTTT 740
Query 841 TTTGGAACCAGTATCGCTAGAAACTTTGGTCCTCAGTTCCTTTTGAAGCTGTACCTTGCT 900
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 741 TTTGGAACCAGTATCGCTAGAAACTTTGGCCCTCAGTTCCTTTTGAAGCTGTACCTTGCT 800
Query 901 GGAGCCCTTGGGGGCTCTGTTTTCTACTTGATTCACCATGCTTATATGGCTGCAACATCG 960
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 801 GGAGCCCTTGGTGGCTCTGTTTTCTACTTGATTCACCATGCTTATATGGCTACAACATCG 860
Query 961 CCCAAGGGTCAAGGAGCTTTCGTGAGGGATCCATCGAGAACCCCGGGACTGGGCGCGAGT 1020
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 861 CCCAAGGGCCAAGGAGCTTTTGTGAGGGATCCATCGAGAACCCCGGGACTGGGCGCGAGT 920
Query 1021 GGAGCCGTGAATGCCATCATGCTGCTCGATATCTTCCTGCACCCAAGAGCTACTCTATAC 1080
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 921 GGAGCCGTGAATGCCATCATGCTGCTGGATATCTTCCTGCACCCAACAGCTACTCTATAC 980
Query 1081 TTGGAATTTTTCATTCCAGTTCCGGCAATGTTGCTTGGTATCTTTCTCATAGGAAAAGAC 1140
|| ||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 981 TTAGAATTCATCATTCCAGTTCCCGCAATGTTGCTTGGTATCTTCCTCATAGGAAAAGAC 1040
Query 1141 ATTTTAAGGATAACAGAGGGGAACAGTAACATATCAGGTTCAGCTCATTTGGGAGGAGCT 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1041 ATTTTAAGGATAACAGAGGGGAACAGTAACATATCAGGTTCAGCTCATTTGGGAGGAGCT 1100
Query 1201 GCAGTTGCAGCCATCGCCTGGGCTCGGATTAGGAAAGGCCGTTTCCGCTTTTGACTTGAC 1260
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1101 GCAGTTGCAGCCATCGCCTGGGCTCGGATTAGGAAAGGCCGCTTCCGCTTTTGACTTGAC 1160
Query 1261 CTTGCTTGGTTTTGGTCATCTTTAGAGAAATCTATCTATAAATGATTTAAGTAAGTTTGA 1320
||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||
Sbjct 1161 CTTGCTTGGTTTTGGTCATCTTTAGAGAAATCTTTCTTTAAATGATTTAAGTAACTTTGA 1220
Query 1321 ATCTTTGA 1328
||||||||
Sbjct 1221 ATCTTTGA 1228
Score = 106 bits (57), Expect = 5e-22
Identities = 94/109 (86%), Gaps = 13/109 (12%)
Strand=Plus/Plus
Query 16 TTTCCAAAACATCAAGAAAGTTCTTACACAAAAACATCAAAGCTGCTCAATTTTGGTCTG 75
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTTCCAAAACATGAAGAAAGTTCTTACACAAAAACATCAAAGCTGCTCAATTTTG----- 55
Query 76 CACATTGATTATGTGTCGGACAGAGACTATCGAGTAATACCCAGTAGTC 124
| | || |||||| ||||||||||||||||||||||||||||||
Sbjct 56 -A--T--AT---GTGTCGAACAGAGACTATCGAGTAATACCCAGTAGTC 96
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54545230840
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5