BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18610.1
Length=2150
Score E
Sequences producing significant alignments: (Bits) Value
Ahg911676 jgi|Araly1|911676|Al_scaffold_0001_1930 1893 0.0
Ahg316360 jgi|Araly1|316360|fgenesh1_pm.C_scaffold_2001393 859 0.0
> Ahg911676 jgi|Araly1|911676|Al_scaffold_0001_1930
Length=1353
Score = 1893 bits (1025), Expect = 0.0
Identities = 1087/1118 (97%), Gaps = 0/1118 (0%)
Strand=Plus/Plus
Query 315 GCAAAGCAGATATGGACTCAGCCAATGATCAATGGCACACCTCCTCCTCCCAGGGACAGT 374
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 232 GCAAAGCAGATATGGACTCAGCCAATGATCAATGGCACACCTCCTCCTCCAAGGGACAGT 291
Query 375 CACAGCTGTACAACAGTCGGCGACAATCTTTTTGTGTTTGGTGGTACTGATGGAGTTAAC 434
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 292 CACAGCTGTACAACAGTCGGTGACAATCTTTTTGTGTTTGGTGGTACTGATGGAGTTAAC 351
Query 435 CCTCTTAAGGATTTGTATATTCTAGATACTTCTTCACATACTTGGAAATGTCCGAGTGTT 494
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 352 CCTCTCAAGGATTTGTATATTTTAGATACTTCTTCACATACTTGGAAATGTCCGAGTGTT 411
Query 495 AGGGGAGAGGGACCTGAGGCAAGAGAAGGTCATAGCGCCACACTGGTTGGTAAAAGGCTG 554
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 412 AGGGGAGAGGGACCTGAGGCAAGAGAAGGTCATAGCGCCACGCTGGTTGGTAAAAGGCTG 471
Query 555 TTTGTCTTTGGTGGCTGTGGGAAATCTTCTGGTATTAATGAAGAAATCTATTACAATGAC 614
||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||
Sbjct 472 TTTGTCTTTGGTGGCTGTGGGAAATCTTCTGATATTAATGACGAAATCTATTATAATGAC 531
Query 615 GTTTACATATTTAATACAGAAACTTTTGTGTGGAAACGGGCTGTTACAATTGGGAATCCT 674
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 532 GTTTACATATTTAATACAGAGACTTTTGTGTGGAAACGGGCTGTTACAATTGGAAATCCT 591
Query 675 CCATCTGCGCGGGATAGCCATTCTTGCTCATCGTGGAAGAACAAACTTGTTGTTATAGGT 734
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 592 CCATCTGCGCGGGATAGCCACTCTTGCTCATCGTGGAAGAACAAACTTGTTGTTATAGGT 651
Query 735 GGCGAAGATGGACATGACTACTATCTGTCCGATGTTCATATCCTTGATACAGATACACTT 794
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 GGCGAAGATGGACATGACTACTATCTGTCCGATGTTCATATCCTTGATACAGATACACTC 711
Query 795 ATATGGAAAGAGTTGAATACTTCAGGGCAGTTGTTGACACCTCGAGCTGGTCATGTTACT 854
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 ATATGGAAAGAGCTGAATACTTCAGGGCAGTTGTTGACACCTCGAGCTGGTCATGTTACT 771
Query 855 GTTTCACTTGGGAGGAACttttttgtttttGGAGGGTTTACGGATGCTCAGAATCTTTAC 914
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 772 GTTTCACTTGGGAGGAACATTTTTGTGTTTGGAGGGTTTACGGATGCTCAGAATCTTTAC 831
Query 915 GATGATCTCTATGTGCTTGATGTCGATACGTGTATATGGTCCAAGGTTCTCACCATGGGA 974
|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 832 GATGATCTCTATGTGCTTGATGTCGATACGTGCGTATGGTCAAAGGTTCTCACCATGGGA 891
Query 975 GAAGGACCATCTGCTAGGTTCTCTTCTGCAGGGGCTTGTCTAGATCCTCACAAAGCTGGT 1034
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 GAAGGACCATCTGCTAGGTTCTCTTCTGCAGGGGCTTGTCTAGATCCTCACAAAGCTGGT 951
Query 1035 TTTCTTGTCATTGTTGGTGGCTGCAATAAGAATCTCGAGGCGTTGGATGACATGTTCTAC 1094
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 952 TTTCTTGTCATTGTTGGTGGCTGCAATAAGAATCTCGAGGCATTGGATGACATGTTCTAC 1011
Query 1095 TTACAGACAGGTCTTGGATACGATGCAAGATTTGATCAAAATGTAGGGATGTTGTCTCTA 1154
|| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1012 TTGCACACAGGTCTTGGATACGATGCAAGATTTGATCAAAATGTAGGGAGGTTGTCTCTA 1071
Query 1155 AAGAAGCAATTGAAGATAAAATGCCAAGAACAAAGTCATGCAAGTTCCTTGTACGATAAA 1214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1072 AAGAAGCAATTGAAGATAAAATGCCAAGAACAAAGTCATGCAAGTTCCTTGTACGATAAA 1131
Query 1215 TCACTTGTCAGAATCAATATGGATCATCAAGGAAGAGGAAATTTTGGTTTGAACACTTGC 1274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1132 TCACTTGTCAGAATCAATATGGATCATCAAGGAAGAGGAAATTTTGGTTTGAACACTGGC 1191
Query 1275 CAATTTAATGAAGGAAAGATGATGTTTCAAGCCCGGATAACCGAGAGTTACCCGGTTGGT 1334
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1192 CAATTTAATGAAGGAAAGATGATGTTTCAAGCCCGGATAACCGAGAGTTACCCTGTTGGT 1251
Query 1335 TACACTATGGAAACAATGATAGATGGAAAAGTGCTTCGTGGTGTTTTGTTTTCAAACAAG 1394
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1252 TACACTATGGAAACAATGATAGACGGAAAAGTGCTTCGTGGTGTTTTGTTCTCAAACAAG 1311
Query 1395 CGCAGCTCTATTCTGCCGGCAGATCAAAGCTTTAGTAG 1432
|||||||| ||||| || | |||||||||||||||||
Sbjct 1312 CGCAGCTCCGTTCTGGCGACCGATCAAAGCTTTAGTAG 1349
Score = 318 bits (172), Expect = 9e-86
Identities = 178/181 (98%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 135 ATGAGGTGGGAAAGGGTCCGACAACTACAGCAACAAGTGGGTCTCGGTGAGTCTTCTTCC 194
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 1 ATGAGGTGGGAAAGGGTCCGACAACAACAGCAACAAGTGGGTCTCGGTGACTCTTCTTCC 60
Query 195 GGGCCCGGTAAGAGGTGGGGTCACACTTGTAACGCCATTAAAGGAGGTAGCTTTCTCTAT 254
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGGCCCGGTAAGAGGTGGGGACACACTTGTAACGCCATTAAAGGAGGTAGCTTTCTCTAT 120
Query 255 GTTTTCGGTGGCTATGGCAGAGATAATTGCCAAACCAATCAAGTCCATGTTTTCGACGCT 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTTTTCGGTGGCTATGGCAGAGATAATTGCCAAACCAATCAAGTCCATGTTTTCGACGCT 180
Query 315 G 315
|
Sbjct 181 G 181
> Ahg316360 jgi|Araly1|316360|fgenesh1_pm.C_scaffold_2001393
Length=1704
Score = 859 bits (465), Expect = 0.0
Identities = 853/1036 (82%), Gaps = 44/1036 (4%)
Strand=Plus/Plus
Query 167 ACAAGTGGGTCTCGGTGAGTCTTCTTCCGGGCCCGGTAAGAGGTGGGGTCACACTTGTAA 226
|||||||||||||||||| ||||||||||||||||| || || ||||| |||||||||||
Sbjct 21 ACAAGTGGGTCTCGGTGATTCTTCTTCCGGGCCCGGGAATAGATGGGGACACACTTGTAA 80
Query 227 CGCCATTAAAGGAGGTAGCTTTCTCTATGTTTTCGGTGGCTATGGCAGAGATAATTGCCA 286
|||||||||||| ||| | |||||||| ||||||||||| | ||||||||| ||||||
Sbjct 81 CGCCATTAAAGGTGGTCGATTTCTCTACGTTTTCGGTGGTTTTGGCAGAGACAATTGCTT 140
Query 287 AACCAATCAAGTCCATGTTTTCGACGCTGCAAA-GCAGATATGGACTCAG-CCAATGATC 344
||| |||||||| ||||| |||||| || |||| |||| ||||||||| | || | |||
Sbjct 141 AACAAATCAAGTTCATGTCTTCGACACT-CAAACGCAGTTATGGACTC-GACCTGTAATC 198
Query 345 AATGGCACACCTCCTCCT-CCC-AGGGACAGTCACAGCTGTACAACAGTCGGCGACAATC 402
||||| ||| | ||| ||| |||||||||||||||||||||||||| || || || |
Sbjct 199 AATGGTGTACC-GC-CCTGCCCGAGGGACAGTCACAGCTGTACAACAGTTGGGGATAACC 256
Query 403 TTTTTGTGTTTGGTGGTACTGAT-GGAGTTAACCCTCTTAAGGATTTGTATATTCTAGAT 461
||||||||||||||||||||||| ||| || ||| || ||| || | |||||||||
Sbjct 257 TTTTTGTGTTTGGTGGTACTGATGGGA-CCAATTATCTCAACGATGTGCACATTCTAGAT 315
Query 462 ACTTCTTCACATACTTGGAAATGTCCG-AGTGTTAG-GGGAGAGGGACCTGAGGCAAGAG 519
||||||||||||||||||| ||| ||| | | |||| ||| || ||||| | ||||||||
Sbjct 316 ACTTCTTCACATACTTGGATATGCCCGGA-TATTAGAGGG-GAAGGACCAGGGGCAAGAG 373
Query 520 AAGG-TCATAGCGCCA-CACTGGTTGGTAAAAGGCTGTTTG-TCTTTGGTGGCTGTGGGA 576
| || |||||| || | | || |||| ||| | || ||| | ||||| ||||||||||
Sbjct 374 A-GGCTCATAGTGC-AGCGCTTGTTGACAAACGTCT-TTTCATATTTGGCGGCTGTGGGA 430
Query 577 AATCTTCTGGTATTA--ATGAAGAAATCTAT-TACAATGACGTTTACATATTTAATACAG 633
||||||||| ||| |||| ||| | | | || |||||| |||||||| |||||||||
Sbjct 431 AATCTTCTG--ATTCGGATGATGAAGTAT-TCTATAATGACCTTTACATACTTAATACAG 487
Query 634 AAACTTTTGTGTGGAAACGGGCTGTTACAAT-TGGGAATCCTCCATCTGCGCGGGATAGC 692
|||||||| |||||||||| ||||| ||| | |||||| || || ||||| || ||||||
Sbjct 488 AAACTTTTATGTGGAAACGTGCTGTAACA-TCTGGGAAACCGCCCTCTGCACGAGATAGC 546
Query 693 CATTCTTGCTCATCGTGGAAGAACAAACTTGTTGTTA-TAGGTGGCGAAGAT--GGACAT 749
|| |||||||| |||||||||||||| | |||| | ||||||| |||||| ||| |
Sbjct 547 CACACTTGCTCAGCGTGGAAGAACAAAATCATTGT-AGTAGGTGGTGAAGATTTGGA--T 603
Query 750 GACTACTATCTGTCCGATGTTCATATCCTTGATACAGATACACTTATATGGAAAGAGTTG 809
||||| ||||| || || |||||||||||||||||||||| | || | ||||| || |||
Sbjct 604 GACTATTATCTCTCTGACGTTCATATCCTTGATACAGATAAATTTGTTTGGAAGGAATTG 663
Query 810 A-ATACTTCAGGGCAGTTGTTGACACCTCGAGCTGGTCATGTTACTGTTTCACTTGGGAG 868
| | |||||||| |||||||| ||||||||||| |||||||| |||||| |||| | |||
Sbjct 664 AGA-ACTTCAGGACAGTTGTTAACACCTCGAGCCGGTCATGTCACTGTTGCACTAGAGAG 722
Query 869 GAACttttttgtttttGGAGGGTTTACGGATGCTCAGAATCTTTACGATGATCTCTATGT 928
|||||| ||||| |||||||||||||||||| ||||||||||||| |||||||| |||||
Sbjct 723 GAACTTATTTGTATTTGGAGGGTTTACGGATTCTCAGAATCTTTATGATGATCTATATGT 782
Query 929 GCTTGATGTCGATACGTGTATATGGTCCAAGGTTCTCACCATGGGAGAAGGACCATCTGC 988
||||||| | || ||| || ||||||||||||| | | |||| |||||| |||||| |
Sbjct 783 GCTTGATTTGGAAACGGGTGTATGGTCCAAGGTAGTTGCTATGGAAGAAGGGCCATCTCC 842
Query 989 TAGGTTCTCTTCTGCAGGGGCTTGTCTAGATCCTCACAAAGCTGGTT--TTCTTGTCATT 1046
||| ||||||||||||| || |||| || ||||| |||| ||||||| || || || ||
Sbjct 843 TAGATTCTCTTCTGCAGCGGTTTGTTTACATCCTTACAAGGCTGGTTCGTT-TT-TCTTT 900
Query 1047 GTTGGTGGCTGCAATAAGAATCTCGAGGCGTTGGATGACATGTT-CTACTTACAGACAGG 1105
||||||||||||||||||||||| ||| ||||||||||||| || ||||||||| ||||
Sbjct 901 GTTGGTGGCTGCAATAAGAATCTTGAGCCGTTGGATGACAT-TTACTACTTACACACAGA 959
Query 1106 TCTTGGATACGATG-CAAGATTTGATCAAAATGTAGGGATGTTGTCTCTAAAGAAGCAAT 1164
||||||||||| | || ||| |||||||| |||| ||||||||| | ||| |||
Sbjct 960 AGGTGGATACGATGTCCAG-TTTAATCAAAATCCAGGGCGGTTGTCTCTTAGGAAACAAA 1018
Query 1165 TGAAGATAAAATGCCA 1180
||||| ||||||||||
Sbjct 1019 TGAAGCTAAAATGCCA 1034
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80903680380
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5