BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18620.2
Length=3385
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472083 jgi|Araly1|472083|fgenesh2_kg.1__2037__AT1G18620.2 4665 0.0
Ahg476557 jgi|Araly1|476557|fgenesh2_kg.2__1687__AT1G74160.1 134 6e-30
> Ahg472083 jgi|Araly1|472083|fgenesh2_kg.1__2037__AT1G18620.2
Length=3295
Score = 4665 bits (2526), Expect = 0.0
Identities = 3010/3236 (93%), Gaps = 64/3236 (2%)
Strand=Plus/Plus
Query 12 GAAACATTTTGCAGAGGttc-ttta-t-tct--tcttcttc-t-tt-gcttggcgctttc 63
|||||||||||||||||||| |||| | ||| |||||||| | || |||||||| ||||
Sbjct 1 GAAACATTTTGCAGAGGTTCTTTTATTCTCTCATCTTCTTCTTCTTGGCTTGGCGGTTTC 60
Query 64 tttctttcCCTAAGGTTTTGAATGTACATTCTCTGA-T--CAGTGATCTTCTTCTGGGAG 120
||||||| ||| || ||||||||||||||||||||| | ||||||||||||||||| |
Sbjct 61 TTTCTTTTCCTTAGATTTTGAATGTACATTCTCTGATTCACAGTGATCTTCTTCTGGAAT 120
Query 121 ATTAAGTTTTCAGACAAAAGAGCTTTTGTTCTGTAATAATGGAGCTTGTCTTATTCCTTT 180
||||||||||| ||| ||| || ||||||||||||||||||||||||||||| |||
Sbjct 121 ATTAAGTTTTCCGAC-AAA-AG-----GTTCTGTAATAATGGAGCTTGTCTTATTCTTTT 173
Query 181 T--GG--G-GATTTACTGGAAGCACAATAAAGAAGAGTTAAGACACTGTCACTACAGAGA 235
| || | |||||||||||||||| | |||| |||| | |||||||||||||||||||
Sbjct 174 TGGGGTTGAGATTTACTGGAAGCAC-A-AAAG-AGAG-T-AGACACTGTCACTACAGAGG 228
Query 236 GAAGAGTTCAAATTCTCTCCTTTTTGTTACCAGT-A-----GC-AAG-TTCCGGCGCCGG 287
||||||||||||||||||||||||| | |||| | | || ||| || | | |
Sbjct 229 GAAGAGTTCAAATTCTCTCCTTTTT-TCACCATTCATGGCTGCGAAGCTT-CTTCTTCAT 286
Query 288 AGATTCGCCGGA-GAACCCTCCTGG-T-TTCAGAAGAAAATTGGATGTATGAATGGGATT 344
| ||| | | || ||| || | || | | |||||||||||||||||||| |||||||||
Sbjct 287 ACATT-GGCAGATGAAAACT-C-GGATCTGCAGAAGAAAATTGGATGTATAAATGGGATT 343
Query 345 TTCCAAATCTTTGATCGACACCATATTCTCACAAGCCGGCGTAAAAGTCTTACTTTAGGT 404
||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||
Sbjct 344 TTCCAAATCTTTGATCGCCACCATGTTCTCACAAGCCGGCGTCAAAGTCTTACTTTAGGT 403
Query 405 AATGCACATGTCAATAGTATCAACTTTGAAAGAGACTCTGTTGATGCAATTTGTCAGCAA 464
||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 404 AATGCACATGTCAGTAGTATCAACTTTGAAAGAGGCTCTGTTGATGCAATATGTCAGCAC 463
Query 465 AGATCAGCATTTCAGTGTCAGGACTCAAACCTTGTTAGCAGTAATGGATTGAGCGAGAAA 524
|||||||||||||||| ||| |||||||||||| |||| | ||||| ||| ||||||
Sbjct 464 AGATCAGCATTTCAGTTTCAAGACTCAAACCTTATTAGTGGAAATGGGCCGAGTGAGAAA 523
Query 525 CTAACGAGGCTATCAACCGAATGTTCGAGGGTTTCTTTCTCATCATCGTGTTCATCATCT 584
||||| ||| ||||||| |||| ||| ||||||||||||||||| |||||||||||||||
Sbjct 524 CTAACAAGGGTATCAACAGAATCTTCAAGGGTTTCTTTCTCATCGTCGTGTTCATCATCT 583
Query 585 TCCCCGTTGTCTTCCGAGGTCAACAGAGAAGTTCAGCCTGAGATTTCTGCGGATGACCGA 644
||||| |||||||| ||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 584 TCCCCATTGTCTTCTGAGGTCAACAGAGAAGTACAGCTTGAGATTTCTGCGGATGACCGA 643
Query 645 GTCATTTTTCCAGAATCTCCTACAAGTGATCCAGTGATGAGCCAAGGAACTGGTGCTCGT 704
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 644 GTCATTTTTCCAGAATCTCCTACAAGTGATCCAGTGATGAGCCAAGGAAGTGGTGCACGT 703
Query 705 GTGGGACTTGACCTTAGAGATGTTGTTAGAGATTCTATGTATAGAGAAGCTAGAGGGCTT 764
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 704 ATGGGACTTGACCTTAGAGATGTTGTTAGAGATTCTATGTATAGAGAAGCTAGAGGGCTT 763
Query 765 TCTGATGTATGTAGGCAAAACAGAAGAGAGGATTCTCCAAGACCCTATGGTTTGAAGCAA 824
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 764 TCTGAAGTATGTAGGCAAAACAGAAGAGAGGATTCTCCAAGACCCTATGGTTTGAAGCAA 823
Query 825 TCCAGGCCTGTTGATTTCAATGAATCCTGCAGAGCTCTAGCCAAACTTAGAAAAACATCT 884
|||| |||||| ||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 824 TCCACGCCTGTCGATTTCAATGAGTCCTGCAGAGCTTTAGCCAAACTTAGAAAAACATCT 883
Query 885 CATCACTATTACAATGAGGTTGACATGAAAGATACATCCCGTTACTATGTTGATTCTCGC 944
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 884 CATCATTATTACAATGAGGTTGATATGAAAGATACATCCCGTTACTATGTTGATTCTCGC 943
Query 945 GGAAAGTCGAAATCCGGGAAGAAGCTGAAAGAGTTGCCTAGGCTTTCGTTGGACAGTAGA 1004
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 944 GGAAAGTCGAAATCCGGGAAGAAGCTCAAAGAGTTGCCTAGACTTTCGTTGGACAGTAGA 1003
Query 1005 GACCACGTTGATCTCAAATCAGGTAATAAACTTTCTGAAAGTTTCAGTAGAAGCTCTAGC 1064
|||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1004 GACCACGTTGATCTCAAACCAGGTAATTTGCTTTCTGAAAGTTTCAGTAGAAGCTCTAGT 1063
Query 1065 ATGAACAAAGTTTCAGGTAGCCCGAAACGGCCTCCTAGTGTTGTTGCCAAGCTAATGGGC 1124
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1064 ATGAACAAAGTTTCAGGTAGCCCGAAACGGCCTCCTAGTGTTGTTGCGAAGCTAATGGGC 1123
Query 1125 TTGGAAACATTACCGGGTTCTCCTTTGAGCAGAGACAGATTCAACATGTTTGATGATAAC 1184
|||||||||||||| |||||||||||| |||||| | ||||||||||||||||||||||
Sbjct 1124 TTGGAAACATTACCAAGTTCTCCTTTGAACAGAGAAAAATTCAACATGTTTGATGATAAC 1183
Query 1185 AGTGATCCATTCGCAAGATCATTGAGGGAAAATAGCCTGAACCGTTCTCTTCGGTTCTCT 1244
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1184 AGTGATCCATTCTCAAGATCATTGAGGGAAAATAGCCTGAACCGTTCTCTTCGGTTTTCT 1243
Query 1245 CCTAGCTCGCCCAGAAGCTTAGGAAAGGACCCTGCTGCTTCTTCTTCTTCTCCAAGATGG 1304
|||||||| || ||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 1244 CCTAGCTCACCGAGAAGCTTAGGTAAGGACCCTACTGCTTCTTCTTCTTCTCCAAGATGG 1303
Query 1305 AGAAGCTCTGAGTTTGTTATGAAACCCTTATCAAGTTTGAGATATCCCATTGAACCAGCT 1364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1304 AGAAGCTCTGAGTTTGTTATGAAACCCTTATCAAGTTTGAGATATCCCATTGAACCAGCT 1363
Query 1365 CCTTGGAAGCAAACCGAGAGAAACCGGTTTTCTCAAAAGCAAGCCTGCAGGTCTGTGAAA 1424
|||||||||||||| || |||||||||||||||||||||||||||||| |||| ||||||
Sbjct 1364 CCTTGGAAGCAAACTGATAGAAACCGGTTTTCTCAAAAGCAAGCCTGCTGGTCAGTGAAA 1423
Query 1425 TCTCTGTCACAGTCGATGGAGGGAAAATTGAAAGATCTTGAGGTTAAACATTCGGGAAAG 1484
|||||||| ||||| |||||||||| |||||||||||| ||| |||||||||||||||||
Sbjct 1424 TCTCTGTCCCAGTCAATGGAGGGAAGATTGAAAGATCTCGAGTTTAAACATTCGGGAAAG 1483
Query 1485 GATCTCAGAGCTCTTAAAGATATATTAGAGGCAATGCAATCAAAAGGTCTCTTTGATACT 1544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1484 GATCTCAGAGCTCTTAAAGATATATTAGAGGCAATGCAATCAAAAGGTCTCTTTGATACT 1543
Query 1545 CGAAAGCAACAACAATGCTCAAACTTGGAAGCTCAAAGAGATTACGAACTGGCAGATTCT 1604
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1544 CGAAAGCAACCACAATGCTCAAACTTGGAAGCTCAAAGAGATTACGAACTGGCAGATTCT 1603
Query 1605 GCAACTTCTAAGCATGATTCAATAGACCTGAGAAACCCGGTGATTCCATCCAATATGAGA 1664
||||||||||| ||||||||||| |||||| ||||||||||||| ||||||||||| |||
Sbjct 1604 GCAACTTCTAACCATGATTCAATGGACCTGCGAAACCCGGTGATGCCATCCAATATTAGA 1663
Query 1665 GGTCCAATTGTGATAATGAAACCTGCCAGACTTGTTGAAAAATCTGGTATCCCTTCATCA 1724
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1664 GGCCCAATTGTGATAATGAAACCTGCCAGACTTGTTGAAAAATCTGGTATCCCTTCATCA 1723
Query 1725 TC-TCTGATTCCCATTCACAGTCTATCCGGTCTTAATAAGACCTGCAGAGAAGAACCTGT 1783
|| | ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1724 TCAT-TGATTCCCATTCATAGTCTATCCGGTCTTAACAAGACCTGCAGAGAAGAACCTGC 1782
Query 1784 AAATGTTAGAAGAAGTTCAACAAGTAGAAAGGCAGTAAAAGATCGTAGTCCTGGAAACCA 1843
||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1783 AAATGCTAGAAGAAGTTTAACAAGTAGAAAGGCAGCAAAAGATCGTAGTCCTGGAAACCA 1842
Query 1844 AAGAGCTGAACCATGTATCAGTTCTGACAAGAAATCTAGCAGCAGAAACGTGATGTCTTC 1903
||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||
Sbjct 1843 AAGAGCTGAACCATGTATCAGTTCTAATAAGAAATCTAGCAGCAGAAACGTGAGGTCTTC 1902
Query 1904 TCAGGTTTACAAAGAAAGCACTTCAAAGAATTCAGGGCCTGCAAGTTCAAAGTTGCAGCA 1963
|||||||| ||||||||||||||||||||||||||| ||| ||||| |||| ||||||||
Sbjct 1903 TCAGGTTTCCAAAGAAAGCACTTCAAAGAATTCAGGACCTACAAGTCCAAAATTGCAGCA 1962
Query 1964 GATGAAGCCTGAGCATGACAAGCGTTCTCGACCACCAGCCTCTCCATCTGATTCAAGCAA 2023
|||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1963 GATGAAGCATGAGCAAGACAAGCGTTCTCGGCCACCAGCCTCTCCATCTGATTCAAGCAA 2022
Query 2024 ATTAAGAAAACAAATAAGCCGACAACCCGTGGAATCTACTACTTCTCCTGGTGGGAGGCG 2083
||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||
Sbjct 2023 ATTAAGAAAACAAATAAACCGACAACCCGTGGAATCTACTACTTCTCCTGGTGGTAGACG 2082
Query 2084 TAGTAGACCCAGGGATCAGAGGAGCTTGCAGCAAAATGATGGCCAACTTAGCCAAATGAG 2143
|||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct 2083 TAGTAGACCCAGGGATCAGAGGAGCTTGCAACAAAATGATGGCCAACTAAGTCAAATGAG 2142
Query 2144 CAATAAATCTAGGACTAAAATAGAAGCCACCTTGAGTATCGAAAATGGTGGAAAGAGCCC 2203
|||||||||||| ||||||| ||||||| || ||||| ||||||||||||||||||| ||
Sbjct 2143 CAATAAATCTAGTACTAAAACAGAAGCCCCCGTGAGTCTCGAAAATGGTGGAAAGAGTCC 2202
Query 2204 ATCTGTTATAGAGGCAGCCAAAGCTGTAGTCTCTAACTTAATACAGAATAAGTCCAGTCC 2263
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2203 ATCTGTAATAGAGGCAGCCAAAGCTGTAGTCTCTAACTTAATACAGAATAAGTCCAGTCC 2262
Query 2264 AACGTTTAGTGAAGATGGATCATCAGAACATCCAAGTCCAGTTTCTGTTCTCAATGCAGA 2323
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2263 AACGTTTAGTGA---TGGATCATCAGAACATCCAAGTCCAGTTTCTGTTCTCAATGCAGA 2319
Query 2324 AATCTACCGAGAGATCGAACCATCTCCTGTGAAAATCCAAGCTAGTGAAGGCAGTGTTAA 2383
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2320 AATCTACAGAGAGATCAAACCATCTCCTGTGAAAATCCAAGCTAGTGAAGGCAGTGTTAA 2379
Query 2384 TGGCTCTATTAACTCGGGTGTTGAACATTGCGAGGAGGACCAGTGGAATCCAGCTTATAG 2443
|||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2380 TGGCCCTATTGACTTGGGTGTTGAACATTGCGAGGAGGACCAGTGGAATCCAGCTTATAG 2439
Query 2444 CTTCTCAAAGACAACAACAAGCTTTTCGCCAGAGATGAACCGAAAGAAGCTTCAGAATGT 2503
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 2440 CTTCTCAAAGACAACAACCAGCTTTTCGCCAGAGATGAACCGAAAGAAACTTCAGAATGT 2499
Query 2504 TGAGCATTTGGTTCAAAAGCTAAAAAGACTAAACTCTAGCCATGACGAAACCAGTCAAGA 2563
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2500 TGAGCATTTGGTTCAAAAGCTAAGAAGACTAAACTCTAGCCATGACGAAACCAGTCAAGA 2559
Query 2564 TTACATTGCATCTTTATGCGAGAACAGTGATCCTGACACCGATCACAGATACATTTCCGA 2623
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 2560 TTACATTGCATCTTTATGCGAGAACAGTGATCCTAACACCGATCATAGATACATTTCCGA 2619
Query 2624 GATTCTTTTAGCCTCGGGTCTTCTCCTCAGAGATCTTGGCTCAGGATTAACAACTTTTCA 2683
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2620 GATTCTTTTAGCCTCAGGTCTTCTCCTCAGAGATCTCGGCTCAGGATTAACAACTTTTCA 2679
Query 2684 ACTGCACCCTTCAGGCCACCCAATTAATCCGGAGCTGTTCCTTGTGATTGAGCAAACTAA 2743
|||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 2680 ACTGCACCCTTCAGGCCACCCAATCAATCCGGAGCTGTTCCTTGTTCTTGAGCAAACTAA 2739
Query 2744 AGGATGCAGCAG---TAGCAGCAATGAAAAGATCAACCGCAAACTTGTGTTCGATGCTGT 2800
|||||||||||| ||||||||| |||||| ||||||||||||||||||| ||||||||
Sbjct 2740 AGGATGCAGCAGCAGTAGCAGCAACGAAAAGCTCAACCGCAAACTTGTGTTTGATGCTGT 2799
Query 2801 TAATGAAATGCTCGGGAAGAAGCTAGCTTTTGTTGAGAGCTATGTAGATCCATGGATGAA 2860
|||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 2800 TAATGAAATGCTCGGGAAGAAGCTTCCTTTTGTTGAGAGCAATGTAGATCCATGGATGAA 2859
Query 2861 GCAAGCTAAAGCGAGAAAGAAGGTCTTAAGTGCACAAAATCTGTTGAAGGAACTATGTTC 2920
|||||| ||| |||| |||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 2860 GCAAGCGAAAACGAGGAAGAGGGTCTTAAGTGCACAAAATCTCTTGAAGGAACTATGTTC 2919
Query 2921 AGAGATAGAGATACTACAAAAGCAAGCCAAGAAGAGATCAGAAAACTTGTTGTTGTTGGA 2980
|||||||||| ||||||||||||||||||||||||||||||| |||||||| | |
Sbjct 2920 TGAGATAGAGACACTACAAAAGCAAGCCAAGAAGAGATCAGAAGACTTGTTG--G----A 2973
Query 2981 GgaagaagaagaagaagaagaagaTTTCTTGAAATGTATATTGGATGAAGATATGGCAAT 3040
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2974 GGAAGAAGAAGAAGAAGA------TTTCTTGAAATGTATATTGGATGAAGATATGGCAAT 3027
Query 3041 CCAATCTGAGAAATGGACAGACTTTGATGATGCAATCCCTGGTTTAGTGCTTGACATGGA 3100
|| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 3028 CCGATCTGGGAAATGGACAGACTTTGATGATGCAATCCCTGGTGTAGTGCTTGACATGGA 3087
Query 3101 GAGGCTTCTCTTCAAAGATCTGGTGAAAGAGATTGTGCACGGTGAGATTGATCGGCTGCA 3160
|||||||||||||||||| |||||||| ||||| |||||||||||||||| |||||||||
Sbjct 3088 GAGGCTTCTCTTCAAAGACCTGGTGAATGAGATAGTGCACGGTGAGATTGGTCGGCTGCA 3147
Query 3161 AGGAAACTCAAGGAGACAGAAAACGGTTTTGGCTGACGAGTAGATATTGATTTATA 3216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3148 AGGAAACTCAAGGAGACAGAAAACGGTTTTGGCTGACGAGTAGATATTGATTTATA 3203
> Ahg476557 jgi|Araly1|476557|fgenesh2_kg.2__1687__AT1G74160.1
Length=4089
Score = 134 bits (72), Expect = 6e-30
Identities = 89/97 (92%), Gaps = 2/97 (2%)
Strand=Plus/Plus
Query 2188 ATGGTGG-AAAGAGCCCATCTGTTATAGAGGCAGCCAAAGCTGTAGTCTCTAACTTAATA 2246
||||||| ||| || |||||||| || ||||||||||||||||||||||||||||||||
Sbjct 2770 ATGGTGGTAAA-AGTCCATCTGTAATCGAGGCAGCCAAAGCTGTAGTCTCTAACTTAATG 2828
Query 2247 CAGAATAAGTCCAGTCCAACGTTTAGTGAAGATGGAT 2283
|||||||| |||||||||| |||||||||||||||||
Sbjct 2829 CAGAATAAATCCAGTCCAAGGTTTAGTGAAGATGGAT 2865
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 127797330134
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5