BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G18630.1

Length=751
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg911678 jgi|Araly1|911678|Al_scaffold_0001_1932                    745    0.0  
  Ahg472085 jgi|Araly1|472085|fgenesh2_kg.1__2039__AT1G18640.2         134    1e-30


> Ahg911678 jgi|Araly1|911678|Al_scaffold_0001_1932
Length=477

 Score =  745 bits (403),  Expect = 0.0
 Identities = 455/478 (95%), Gaps = 11/478 (2%)
 Strand=Plus/Plus

Query  108  ATGCATTACATGGGTTTGTTTAGTAGAGCTGGAAACATATTTAGGCAGCCTAGAGCGTTG  167
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| 
Sbjct  1    ATGCATTACATGGGTTTGTTTAGTAGGGCTGGAAACATATTTAGGCAGCCTAGAGCGTTA  60

Query  168  CAGGCCTCAAACGCTATGTTACAGGGCAATCTTTCATTAACTCCATCCAAAATCTTTGTT  227
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  61   CAGGCCTCAAACGCTATGTTACAGGGCAATCTTTCATTAACTCCATCCAAACTCTTTGTT  120

Query  228  GGAGGTCTCTCACCATCTACTGATGTGGAGCTCTTGAAAGAAGCTTTTGGCAGTTTTGGA  287
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  GGAGGTCTCTCACCAGCTACTGATGTGGAGCTCTTGAAAGAAGCTTTTGGCAGTTTTGGA  180

Query  288  AAAATTGTTGATGCGGTAGTGGTTTTGGACCGTGAAAGTGGTTTATCAAGGGGCTTTGGT  347
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  181  AAAATTGTTGATGCGGTAGTGGTTTTGGACCGTGAAAGTGGTCTATCAAGGGGCTTTGGT  240

Query  348  TTCGTAACATATGATTCGATCGAAGTTGCTAATAACGCAATGCAA-GCTATGCAAAATAA  406
            ||||||||||||||||||||||||| ||||||||||||||||||| | |||||| |||||
Sbjct  241  TTCGTAACATATGATTCGATCGAAGATGCTAATAACGCAATGCAATG-TATGCATAATAA  299

Query  407  GGAGCTTGATGGGCGAATAATTGGAGTGCATCCAGCTGATTCAGGAggtggtgg-gg--g  463
            |||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||  |
Sbjct  300  GGAGCTTGATGGGCGAATAATTGGAGTGAATCCAGCTGGTTCAGGAGGTGGTGGTGGCAG  359

Query  464  t---ggt---ggtggttttgcaagaaggggaggttatggtggtggtcgtgggggatatgc  517
            |   |||   ||||||||||||||||||||||||||||||||||||||||| |||| || 
Sbjct  360  TGGGGGTGGGGGTGGTTTTGCAAGAAGGGGAGGTTATGGTGGTGGTCGTGGTGGATTTGG  419

Query  518  tcgtggtggatttggtcgcggtggatttggtggtggtggctatggCTTTGTTCGTTAA  575
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  420  TCGTGGTGGATTTGGTCGCGGTGGATTTGGTGGTGGTGGCTATGGCTTTGTTCGTTAA  477


> Ahg472085 jgi|Araly1|472085|fgenesh2_kg.1__2039__AT1G18640.2
Length=1176

 Score =  134 bits (72),  Expect = 1e-30
 Identities = 79/82 (96%), Gaps = 1/82 (1%)
 Strand=Plus/Minus

Query  670   ATGCTTGAACAAACATATCAAGCGGCTAAAGTTGGCAAAAACATTTGTTGATTCAATTGG  729
             ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  1176  ATGTTTGAACAAACATATCAAGCGGCTAAAGTTGGCAAAAACATTTGTTGATTCAAT-GG  1118

Query  730   TATTTGATACAAATTCATAAAA  751
             ||||| ||||||||||||||||
Sbjct  1117  TATTTCATACAAATTCATAAAA  1096



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27677237742


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5