BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18640.2
Length=1198
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472085 jgi|Araly1|472085|fgenesh2_kg.1__2039__AT1G18640.2 1733 0.0
> Ahg472085 jgi|Araly1|472085|fgenesh2_kg.1__2039__AT1G18640.2
Length=1176
Score = 1733 bits (938), Expect = 0.0
Identities = 1107/1186 (93%), Gaps = 22/1186 (2%)
Strand=Plus/Plus
Query 4 TTCACCAACC-AACAAACACTCTTCTCAGTGGCtttttttttAATTGATCGGATCCTCC- 61
|||||||||| ||| |||||||||||||||| |||||||||| ||||||| |||| |||
Sbjct 1 TTCACCAACCAAAC-AACACTCTTCTCAGTGACTTTTTTTTTTATTGATC-GATCATCCA 58
Query 62 AAGCAGCAGCCGAAGACGACCGCCGGCGA--TTTCCGGTTGGCAATTGTTCTCATCTGAT 119
||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||
Sbjct 59 AAGCAGCAGCCGAAGACGACCGCCGGCGATTTTTCCGGTTGGTAATTGTTCTCGTCTGAT 118
Query 120 CTGCTTT-CTCGCGCTCCAAGTTT-AATGGAAGCATTAACTACTTCAAGGGTTGTGCCAG 177
|| ||| ||| |||||| |||| |||||||||| || |||||||||||||||||||||
Sbjct 119 CT-TTTTCCTCACGCTCC-TGTTTAAATGGAAGCAATAGCTACTTCAAGGGTTGTGCCAG 176
Query 178 TTCAGGTCCCCTGT---AGAAAGCTCTCTTCACTTTTTGCTAATTTTTCTTGCCTTGAGT 234
||||| | || ||| |||||||||||||||||||||||||||| |||||| ||||||
Sbjct 177 TTCAGCTTCCTTGTAGAAGAAAGCTCTCTTCACTTTTTGCTAATTCGTCTTGCATTGAGT 236
Query 235 TAAGGAGATATCCTTGTAGAGGTCTTGTCTCCATTATGAACCATCCCAAATTGCTTCGTC 294
||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||
Sbjct 237 TAAGGAGATATCCTTGTAGAGGTCTTGTCTCGATCATGCACCATCCCAAATTGCTTCGTC 296
Query 295 CAGTGACTGCTTCTGTGCAGCCTCACGAGTTGTCGACTTTGGGGCATGAAGGCAACATTG 354
|||||||||||||||||||||| || ||||||||| |||||||||| ||| ||||| |||
Sbjct 297 CAGTGACTGCTTCTGTGCAGCCACAAGAGTTGTCGGCTTTGGGGCACGAAAGCAACGTTG 356
Query 355 TTCCTTCTAAAGAAATTCTTGATCTTTGGAGAAGTGTTGAAGCGGTATGTTTCGATGTGG 414
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 357 TTCCTTCTAAAGAAATTCTTGATCTTTGGCGAAGTGTTGAAGCGGTATGTTTCGATGTGG 416
Query 415 ACAGCACGGTTTGTGTGGATGAAGGTATTGATGAACTTGCTGAGTTTTGTGGAGCTGGAA 474
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 ATAGCACGGTTTGTGTCGATGAAGGTATTGATGAACTTGCTGAGTTTTGTGGAGCTGGAA 476
Query 475 AGGCTGTTGCTGAATGGACTGCCAGAGCTATGGGTGGATCTGTTCCATTTGAAGAAGCTC 534
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 477 AGGCTGTTGCTGAATGGACTGCCAGAGCAATGGGTGGATCTGTTCCATTTGAAGAAGCTC 536
Query 535 TAGCTGCAAGACTTTCTTTATTCAAGCCTTCTCTTTCAAAAGTAGAGGAATATCTCGACA 594
|||| |||||||| ||||| ||||||||||||||||||||||| |||||||||||||| |
Sbjct 537 TAGCCGCAAGACTCTCTTTGTTCAAGCCTTCTCTTTCAAAAGTTGAGGAATATCTCGAAA 596
Query 595 AGAGACCCCCAAGGCTATCTCCTGGCATTGAAGAGTTGGTCAAGAAACTCAGAGCCAATA 654
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 597 AGAGACCCCCGAGGCTATCCCCTGGCATTGAAGAGTTGGTCAAGAAACTCAGAGCCAATA 656
Query 655 ACATTGATGTCTATTTGATATCTGGAGGTTTTCGACAGATGATCAATCCTGTAGCATCGA 714
| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 ATATTGATATCTATTTGATATCTGGAGGTTTTCGACAGATGATCAATCCTGTAGCATCGA 716
Query 715 TTCTTGGCATCCCTCGGGAGAATATCTTTGCCAACAATCTTCTATTTGGAAACTCCGGCG 774
|||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 717 TTCTCGGCATCCCTCGAGAGAATATCTTTGCTAACAATCTTCTATTTGGAAACTCCGGCG 776
Query 775 AGTTTCTGGGATTTGATGAGAACGAACCTACGTCAAGAAGTGGAGGCAAAGCCAAGGCAG 834
||||||| || |||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 777 AGTTTCTCGGCTTTGATGAGAACGAACCTACATCAAGAAGTGGAGGCAAAGCCAAAGCAG 836
Query 835 TGCAACAAATACGAAAGGGTCGTCTCTACAAGACTATGGCCATGATTGGAGATGGTGCTA 894
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 837 TGCAACAAATACGAAAGGGTCGCCTCTACAAGACTATGGCCATGATTGGAGATGGTGCTA 896
Query 895 CTGATCTCGAAGCACGTAAACCTGGTGGCGCAGATTTGTTCATATGCTACGCTGGAGTTC 954
||||||| |||||||| ||||||||||||||||| |||||||||||||| || |||||||
Sbjct 897 CTGATCTAGAAGCACGCAAACCTGGTGGCGCAGACTTGTTCATATGCTATGCCGGAGTTC 956
Query 955 AGCTTCGTGAAGCCGTTGCAGCAAATGCAGACTGGCTTATCTTTAAGTTTGAATCTCTCA 1014
|||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 957 AGCTTCGTGAAGATGTTGCAGCAAAAGCAGACTGGCTTATCCTTAAGTTTGAATCTCTCA 1016
Query 1015 TAAACTCATTGGACTAAAAGCCTCTATAGTGATTATTCTCGTTTAGCTAAACTCATTATT 1074
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1017 TAAACTCATTGGACTAAAAG-----ATAGTGATTATTCTCGTTTAGCTAAACTCATTATT 1071
Query 1075 CATATCTCCAAATTTGTACCCTTTT---ATGAATTTGTATCAAATACCAATTGAATCAAC 1131
||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||
Sbjct 1072 CATATCTCCAAATTTGTACCCTTTTTTTATGAATTTGTATGAAATACCA-TTGAATCAAC 1130
Query 1132 AAATGTTTTTGCCAACTTTAGCCGCTTGATATGTTTGTTCAAGCAT 1177
|||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1131 AAATGTTTTTGCCAACTTTAGCCGCTTGATATGTTTGTTCAAACAT 1176
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44718181641
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5