BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18650.1
Length=877
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920798 jgi|Araly1|920798|scaffold_102079.1 915 0.0
> Ahg920798 jgi|Araly1|920798|scaffold_102079.1
Length=614
Score = 915 bits (495), Expect = 0.0
Identities = 562/592 (95%), Gaps = 13/592 (2%)
Strand=Plus/Plus
Query 128 GTTCTGGTACAGCGACCATGGCAGTTTTTGTTCTTG-TGATGATTTTGTTGGCCATGGCT 186
|||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||
Sbjct 4 GTTCTGGTACAGCGACCATGGCAGTTGTTGTTCTTGCTG-TGATTTTGTTGGCCATGGCT 62
Query 187 GGTCACTCAAGTGGGACATGGTGTGTATGCAAAGAAGGGTTAAGCGAGGCAATGCTGCAG 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 63 GGTCACTCAAGTGGGACATGGTGTGTATGCAAAGAAGGGTTAAGCGAGGCAATGCTGCAG 122
Query 247 AAGACATTGGACTACGCATGTGGTGCAGGAGCTGATTGTGGACCCATTCACCAGACCGGG 306
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 123 AAGACATTGGACTACGCATGTGGTGCTGGAGCTGATTGTGGACCCATTCACCAGAACGGA 182
Query 307 CCTTGCTTTAACCCTAACACCGTCAAGTCTCACTGCTCCTACGCCGTCAACAGCTTCTTT 366
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 183 CCTTGCTTTAACCCTAACACCGTCAAGTCTCATTGCTCCTACGCCGTCAACAGCTTCTTT 242
Query 367 CAGAAGAAAGGTCAGTCTCTGGGCACTTGTGACTTTGCTGGCACAGCCACCTTCTCAGCC 426
||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||
Sbjct 243 CAGAAGAAAGGTCAGTCTCAGGGCACTTGTGACTTTGCTGGCACAGCCATCGTCTCAGCC 302
Query 427 TCTGATCCCAGCTACACTACTTGTCCTTTCCCTGCAAGTGCCAGTGGAAGTGGGACAACG 486
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 303 TCTGATCCCAGCTACACAACTTGTCCTTTCCCTGCAAGTGCCAGTGGTAGTGGGACAACG 362
Query 487 ACTCCAGTGACGACAACACCTTCGACAAGAGTCCCTACAACAACTAATACAAGACCCTAC 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 ACTCCAGTGACGACAACACCTTCGACAAGAGTCCCTACAACAACTAATACAAGACCCTAC 422
Query 547 ACAATCACACCATCAACAGGAGGAGGTTTGGGAATACCGTCTGG---------TATTAAC 597
||||||||||||||||||||||||||| |||||||||| ||||| |||||||
Sbjct 423 ACAATCACACCATCAACAGGAGGAGGTCTGGGAATACCATCTGGAACAGGAGGTATTAAC 482
Query 598 CCGGATTACACAGATCCATCCTTTGGATTCAAACTCCAAAGCCCAAGATTTGGATTCATA 657
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 483 CCGGATTACACAGATCCATCCTTTGGATTCAAACTCCAAAACCCAAGATTTGGAGTCATA 542
Query 658 GTCTTGTTCACTCTCTTCCTACCCTTT-TACTTGTTTAGCTAACTAAGTGAT 708
||||| || ||||||||| |||| ||| ||||||||||||||||||||||||
Sbjct 543 GTCTTCTTTACTCTCTTCTTACC-TTTCTACTTGTTTAGCTAACTAAGTGAT 593
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32480725284
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5