BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18660.4
Length=2089
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472088 jgi|Araly1|472088|fgenesh2_kg.1__2042__AT1G18660.4 2638 0.0
> Ahg472088 jgi|Araly1|472088|fgenesh2_kg.1__2042__AT1G18660.4
Length=1923
Score = 2638 bits (1428), Expect = 0.0
Identities = 1556/1616 (96%), Gaps = 15/1616 (1%)
Strand=Plus/Plus
Query 10 TGTTCCGACCGAAAAATCAGgaagaagaagaagaagaTTGACAAACAAAAAGGATTCACC 69
|||||||||| ||||||| || |||||||||||||| |||||||||||||||||||
Sbjct 1 TGTTCCGACCCAAAAATC----AG--GAAGAAGAAGATTGGCAAACAAAAAGGATTCACC 54
Query 70 TTTAGTGACTGAG-TGAGAGAAAGAGATTGAAGGaaaaaaaaaaaaaaGGGTGAAGCTTT 128
||||||||||||| ||||||| |||||||||| | |||||||||||| ||||||| ||
Sbjct 55 TTTAGTGACTGAGCTGAGAGAGAGAGATTGAA-G---AAAAAAAAAAAGAGTGAAGC-TT 109
Query 129 GGAGAGAGGATAACCACGTAGAGGATTCTAATCCGTGGTTGCAAACGAAGGACCCAGAAT 188
|||||||| ||||||||||||||| || |||||||||||||||||| |||||||||||||
Sbjct 110 GGAGAGAGAATAACCACGTAGAGGTTTATAATCCGTGGTTGCAAACCAAGGACCCAGAAT 169
Query 189 TTCTGGAATCTCTTGC-TTCGATCGAATCACTCTCATGTCTAACGAAGACTCTCTTCCGC 247
||||||||| |||| | || ||||| ||||||| ||||| |||||||| |||||||||
Sbjct 170 TTCTGGAATTTCTTCCGTT-GATCG-ATCACTCAGATGTCGAACGAAGAATCTCTTCCGG 227
Query 248 CTTTCACTTTGTTTGGTTTGGATGATGTCGAAAATTACGGTCTGGTCACTGAAGCAGACA 307
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 228 CATTCACTTTGTTTGGTTTGGATGATGTCGAAAATTACGGTCTGGTCACTGAAGCAGACA 287
Query 308 ATTCGTTACCTTTAGATATACACAATCAGGTTTTTCAACTTGTGGAGAAGGGAAACCAAT 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 288 ATTCGTTACCTTTAGATATACACAATCAGGTTTTTCAACTTGTGGAGAAGGGAAACCAAT 347
Query 368 CATTCAAAGAGTCTCGCTTTGAAGAGGCTATTAGCAGTTATTCAAAGGCCAATTCTATTA 427
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 348 CATTCAAAGAGTCTCGCTTTGAAGAGGCAATTAGCAGTTATTCAAAGGCCAATTCTATTA 407
Query 428 AACCTCTTGACCCTATTGTTCTTGGCAATAGAAGTGCTGCTTATATAAGATTTGGCCAAT 487
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 408 AACCTCTTGACCCTATTGTTCTTGGCAATAGAAGTGCTGCTTATATTAGATTTGGCCAAT 467
Query 488 ATCTGAAGCAGAGATCTGCATCAATTTCTGAATATAAACCTCTGAATGGTTTTGATATGT 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 ATCTGAAGCAGAGATCTGCATCAATTTCTGAATATAAACCTCTGAATGGTTTTGATATGT 527
Query 548 CGATGCTTGGTGAACTTGCTCTTAAGGATGCTGATAAGCTAATGAGTCTTCAGAGCAGTT 607
|||||||||| ||||||||||||||||||||||||||||| |||| |||||| |||||||
Sbjct 528 CGATGCTTGGGGAACTTGCTCTTAAGGATGCTGATAAGCTGATGAATCTTCAAAGCAGTT 587
Query 608 TAGTGAAGTCATATATTACAAAGGCTTGTGCCCTCATGTTGCTAGAAAGATATGAGGTAG 667
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 588 CAGTGAAGTCATATACTACAAAGGCTTGTGCCCTCATGTTGCTAGAAAGATATGAGGTAG 647
Query 668 CCCGTGACACTATCCTCTCAGGTCTACAGATTGATCCCTTTAGCGGTCCTCTACGATCCA 727
| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 648 CACGTGACACTATCCTCTCAGGTCTACAGATTGATCCCTTTAGCGATCCTCTCCGATCCA 707
Query 728 ATCTTCAGGAATTGGAGAAAGTGATGCCTAATTCGATGCGTAAAACCCATGGAATGGCTG 787
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 708 ATCTTCAGGAATTGGAGAAAGTGATGCCTAATTCGATGCGTAAAACCCATGGAAAGGCTG 767
Query 788 AGCGGTCTGATGATTTTGATTGCACTGTTTGCCTGAAATTGCTGTACGAACCTGCTACAA 847
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 768 AGCGGTCTGATGACTTTGATTGCACTGTTTGCCTGAAATTGCTGTATGAACCTGCTACAA 827
Query 848 CTCCATGTGGGCATACATTCTGCCGATCATGCCTCTTTCAGTCAATGGATCGCGGCAACA 907
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 828 CCCCATGTGGGCATACATTCTGCCGATCCTGCCTCTTTCAGTCAATGGATCGCGGCAACA 887
Query 908 AATGTCCACTATGTCGAACTGTCATTTTTATGACTCCAAGAACATGCGCTGTCAGTGTGA 967
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 AATGTCCACTATGTCGAACTGTCATTTTTATGACTCCAAGAACATGCGCTGTCAGTGTGA 947
Query 968 CACTGAATAACATCATAGAGAAAAACTTTCCAGAGGAGTATGCTGAAAGGAAATCAGAGC 1027
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 948 CACTGAATAACATCATACAGAAAAACTTTCCAGAGGAGTATGCTGAAAGGAAATCAGAGC 1007
Query 1028 AAGACACTCTGGTCCACCTAGGCAATGAAAGTATGCCCCTTTTCGTCATGGATGTGATAA 1087
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 1008 AAGACACTCTGGTCCACTTAGGCAATGAAAGTATGCCCCTTTTCGTCATGGATGTGATCA 1067
Query 1088 TCCCCTGTCAGAAGTTGTCTCTTCATATATTTGAACCACGATATCGACTAATGGTGAGAA 1147
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1068 TCCCCTGTCAAAAGTTGTCTCTTCACATATTTGAACCACGATATCGACTAATGGTGAGAA 1127
Query 1148 GAATAATGGAAGGAAATCATCGGATGGGAATGGTAGCTCTTGATTCGGCGACAGGTTCTC 1207
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1128 GAATAATGGAAGGAAATCATCGGATGGGAATGGTAGCTCTTGATTCTGCGACAGGTTCTC 1187
Query 1208 CAGTGGATGTTGCTTGCGAAGTTGAAATCACAGAGTGTGATCCACTCCCGGATGGACGTT 1267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1188 CAGTGGATGTTGCTTGCGAAGTTGAAATCACAGAGTGTGATCCACTCCCGGATGGACGTT 1247
Query 1268 TTGTCCTGGAGCTGGAAAGCCATAGAAGGTGCCGCATTGTAAAAGCTTGGGATCAAGATG 1327
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1248 TTGTCTTGGAGCTGGAAAGCCATAGAAGGTGCCGCATTGTAAAAGCTTGGGATCAAGATG 1307
Query 1328 GATATCGTGTTGCAGAGGTTGAATGGGTGAAAGATATACCACCACAAAGCGAGCAAGGGA 1387
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1308 GGTATCGTGTTGCAGAGGTTGAATGGGTGACAGATATACCACCACAAAGCGAGCAAGGGA 1367
Query 1388 AAGCAGATCTGCGGGAACTGACGACCAGCGCAGCATCATTTGCTCGGTCATGGCTAGATA 1447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1368 AAGCAGATCTGCGGGAACTGACGACCAGCGCAGCATCATTTGCTCGGTCATGGCTAGATA 1427
Query 1448 GAGCAAAGGAAGCAGCTAGACAAGGAGACAGAAGAAGACTTGAAATACTTCTAAATGTTG 1507
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1428 GAGCAAAGGAAGCAGCTAGACAAGGAGACAGAAGAAGACTTGAATTACTTCTAAATGTTG 1487
Query 1508 AATCTATGATACCAACGCCTCAAGATCCCGAGCGCTTCAGTTTCTGGCTTGCTACACTGA 1567
||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||
Sbjct 1488 AATCTATGATACCAACGCCTCAAGATCCCGAACGCTTCAGTTTCTGGCTTGCCACATTGA 1547
Query 1568 CAGATAGGAGACCTTCAGAAAGATTGGAACTACTTCGGCTTCAGGATACTGGAGAG 1623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1548 CAGATAGGAGACCTTCAGAAAGATTGGAACTACTTCGGCTTCAGGATACTGGAGAG 1603
Score = 468 bits (253), Expect = 8e-131
Identities = 306/330 (93%), Gaps = 10/330 (3%)
Strand=Plus/Plus
Query 1668 GTTTCACCAGTCCCTTTCTTTTGATTGTTGAAACTTTGTTGTTGCAGAGAATAAAGCGCG 1727
|||| |||||||| |||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 1603 GTTTTACCAGTCCTTTTCTTTTGATTATTGAAAC-TTGTTGTTGCAGAGAATAAAGCGCG 1661
Query 1728 GGTTGATATATCTCCGATCAGTAGAAAGAGGATGCAGAATGCAATGAACTGGCAGCATGA 1787
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1662 GGTTGATATATCTCCGATCAGTAGAAAGAGGATGCAGAATGCAATGAACTGGCATCATCA 1721
Query 1788 TGGCATTGTATTGCCGGTTAAACTACAGAGATAAACTTGGGACCTGTTCATAAGAAGGTT 1847
||||||||||||||| || |||||||||||||||| | ||||||||||||||||
Sbjct 1722 GGGCATTGTATTGCCGATTGAACTACAGAGATAAAC-T------TGTTCATAAGAAGGTT 1774
Query 1848 GAC-AAAACATTTATTCATGATTAAAGGAATACATAAGATAGAGATCCTTGTAGGATCGC 1906
||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1775 GACAAAAACA-TTATTCATGATTAAAGGAATACATAAGATAGAGATCCATGTAGGATCGC 1833
Query 1907 TGTCATCCTTTGTCGGATCCATTGTTGTAGATTTTGTTTGCGACTGTATTTTATTTAATT 1966
| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 1834 TATCATCCTTTGTCGGATCCATTGTTGTAGATTTTGTTTGCGAGTGTATTTTACTTAATT 1893
Query 1967 ACCATATTCTTCATTATGCAACTGTAGCAA 1996
|||||||||||||| ||||||||| |||||
Sbjct 1894 ACCATATTCTTCATGATGCAACTGCAGCAA 1923
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78580175435
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5