BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G18680.1

Length=786
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg911684 jgi|Araly1|911684|Al_scaffold_0001_1938                    863    0.0  


> Ahg911684 jgi|Araly1|911684|Al_scaffold_0001_1938
Length=540

 Score =  863 bits (467),  Expect = 0.0
 Identities = 503/521 (97%), Gaps = 0/521 (0%)
 Strand=Plus/Plus

Query  71   CCGCCGCCGCCGTTCCTCCTCCGTCGCCACCTTCATCGCCGTCACGTTCCAATGTAAAAT  130
            ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct  20   CCGCCGCCGCCGTTCCTCCTCCGTCTCCACCTTCATCGCCGTCACGCTCCAATGTAAAAT  79

Query  131  CTAACGGAGAAGAGAGACCTCGTTTCTTCGATGGAAAGGCGAAGAACAAGTGCTGGGCTA  190
            |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  80   CTAAGGGAGAAGAGAGACCTCGTTTCTTCGATGGAAAGGCGAAGAACAAGTGTTGGGCTA  139

Query  191  ATGCTGACATCGTACCTGGTCGACATCCCGAGAGGTGGCGTAAAGACGTCGCCGGTAACA  250
            |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct  140  ATGCTGACATCGTACCTGGTCGACATCCCGAGAGGTGGCGTAAAGATGCCGCCGGTAACA  199

Query  251  TAGTCTGCAAACGCTTCGGAAATTGCAATGGTTGTCTCTGTTTCGAGTATGATCACATTG  310
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  200  TGGTCTGCAAACGCTTCGGAAATTGCAATGGTTGTCTCTGTTTCGAGTATGATCACATTG  259

Query  311  TTCCTTATTCCAAAGGTGGAGAGTCGATAGCGGAGAATTGTCAGATTCTTCAAACAAGAG  370
            ||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||| ||||
Sbjct  260  TTCCTTACTCCAAAGGTGGAGAGTCAATAGCTGAGAATTGTCAGATTCTTCAAACTAGAG  319

Query  371  TTAACAGATTCAAATCAGCTCAAGAAAATGTTGATGCCACCACTCTTAAGAGCTATTCTT  430
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  320  TTAACAGATTCAAATCAGCTCAAGAAAATGTGGATGCCACCACTCTTAAGAGCTATTCTT  379

Query  431  GTGGTCTGCAATTTACGGACAAGGAGTTAGATGTTATCGAGATGGCGGTTTATGGAGACG  490
            |||||||||||||||||||||||||| ||||| ||||||||||||| || |||||||| |
Sbjct  380  GTGGTCTGCAATTTACGGACAAGGAGCTAGATATTATCGAGATGGCCGTGTATGGAGATG  439

Query  491  TGTTACGACCTGGAAAAGAATGTCGCTGCAAAACCGTAGCTGAGCTGCTTGGTCAGTCCA  550
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  440  TGTTACGACCTGGAAAAGAATGTCGCTGCAAAACCGTAGCTGAGCTGCTTGGTCAGTCCA  499

Query  551  AGTCCAAAGATGGTAAAGCCGCATGCGAGTTACCATCATAG  591
            ||||||||||||||||||||||||| |||||||||||||||
Sbjct  500  AGTCCAAAGATGGTAAAGCCGCATGTGAGTTACCATCATAG  540



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29011539837


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5