BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18690.1
Length=2272
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312817 jgi|Araly1|312817|fgenesh1_pm.C_scaffold_1001597 1666 0.0
Ahg476571 jgi|Araly1|476571|fgenesh2_kg.2__1701__AT1G74380.1 1116 0.0
> Ahg312817 jgi|Araly1|312817|fgenesh1_pm.C_scaffold_1001597
Length=1725
Score = 1666 bits (902), Expect = 0.0
Identities = 1007/1059 (95%), Gaps = 2/1059 (0%)
Strand=Plus/Plus
Query 987 ACTTGCTTGAGCCGCCTAAAGCTGATATTAGTCCCAATGCGACATATACTCTAGGGCCCA 1046
||||| |||||||||||||||||| |||||||||||||| | || |||||||||||||
Sbjct 668 ACTTGAATGAGCCGCCTAAAGCTGAGGTTAGTCCCAATGCGGCGTACACTCTAGGGCCCA 727
Query 1047 AAATCACCAACTGGGATAGTCAACGCAAGGTATGGCTGAATCAGAACCCTGAGTTTCCTA 1106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 728 AAATCACCAACTGGGATAGTCAACGCAAGGTATGGCTGAATCAGAACCCTGAGTTTCCTA 787
Query 1107 ATATTGTCAATGGCAAAGCTCGAATATTGCTTCTCACAGGGTCTTCCCCCGGACCCTGTG 1166
|||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||| |
Sbjct 788 GTATTGTCAATGGCAAAGCTCAAATATTGCTTCTCACTGGGTCTTCCCCGGGACCCTGCG 847
Query 1167 ATAAACCAATTGGAAACTATTATCTATTGAAAG-CTGTGAAGAACAAGATTGATTACTGT 1225
|||||||||||||| |||||||||||||| ||| | |||||||||||||||||||| |||
Sbjct 848 ATAAACCAATTGGAGACTATTATCTATTG-AAGTCCGTGAAGAACAAGATTGATTATTGT 906
Query 1226 AGACTCCACGGGATAGAGATTGTGTATAACATGGCGAATTTGGATGAGGAACTCTCAGGG 1285
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 907 AGACTCCACGGGATAGAGATTGTGTATAACATGGCGCATTTGGATGAGGAACTCTCAGGG 966
Query 1286 TATTGGACGAAATTACCTATGATTAGGACATTAATGCTGTCTCATCCAGAAGTAGAATGG 1345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 967 TATTGGACGAAATTACCTATGATTAGGACATTAATGCTGTCTCATCCAGAAGTAGAATGG 1026
Query 1346 ATTTGGTGGATGGATAGTGATGCTTTGTTCACTGATATACTGTTTGAGATCCCGTTGCCT 1405
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1027 ATTTGGTGGATGGATAGTGATGCTTTGTTCACTGATATACTGTTTGAGATCCCGTTACCT 1086
Query 1406 CGGTACGAAAATCATAATCTGGTGATACACGGTTATCCAGACTTGCTGTTCAACCAAAAA 1465
||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1087 CGGTATGAAAATCATAATCTGGTGATACACGGTTATCCGGACTTGCTGTTCAACCAAAAG 1146
Query 1466 TCATGGGTTGCATTGAACACGGGTATCTTTCTGTTGAGAAATTGTCAGTGGTCATTGGAT 1525
|| ||| ||||||| |||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1147 TCTTGGATTGCATTAAACACGGGTATCTTTCTGTTGAGAAATTGTCAGTGGTCGTTAGAT 1206
Query 1526 TTATTAGATGCTTGGGCCCCAATGGGACCAAAAGGGAAGATCCGTGACGAAACTGGGAAG 1585
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1207 TTATTAGATGCTTGGGCCCCAATGGGACCAAAAGGGACGATCCGTGACGAAGCTGGGAAG 1266
Query 1586 ATACTGACAGCTTATCTGAAAGGCAGGCCAGCATTTGAGGCCGATGATCAATCGGCGTTG 1645
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1267 ATACTGACAGCTAATCTGAAAGGCAGGCCAGCATTTGAGGCTGATGATCAATCGGCGTTG 1326
Query 1646 ATATATCTCTTGCTTTCGCAGAAGGAAAAATGGATAGAGAAGGTTTATGTGGAGAATCAA 1705
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1327 ATATATCTCTTGCTTTCGCAGAAGGATAAATGGATAGAGAAAGTTTATGTGGAGAATCAA 1386
Query 1706 TACTACTTGCACGGGTTTTGGGAAGGTTTGGTTGACAGGTATGAAGAGATGATAGAGAAG 1765
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1387 TACTACTTGCACGGGTTTTGGGAAGGTTTGGTTGATAGGTATGAAGAGATGATAGAAAAG 1446
Query 1766 TATCATCCAGGATTGGGCGATGAGAGATGGCCCTTTGTGACACATTTTGTAGGGTGCAAA 1825
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1447 TATCATCCAGGATTGGGAGATGAGAGATGGCCCTTTGTGACACATTTTGTGGGGTGCAAA 1506
Query 1826 CCGTGTGGCAGCTATGCTGATTACGCAGTCGATAGATGCTTCAAGAGCATGGAGAGGGCT 1885
||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1507 CCGTGTGGCAGGTATGCTGATTATGCAGTGGATAGATGCTTCAAGAGCATGGAGAGGGCT 1566
Query 1886 TTTAATTTTGCAGATAATCAAGTGCTGAAGCTGTATGGGTTTAGCCACAGGGGACTGTTG 1945
||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 1567 TTTAATTTTGCAGATGATCAAGTGCTTAAGCTGTATGGGTTTAGCCACAGGGGATTGTTG 1626
Query 1946 AGTCCCAAGATTAAAAGGATCAGAAATGAGACAGTCTCTCCTCTGGAGTCAGTAGACAAG 2005
|| |||||| |||| ||||||||||| |||||||| |||||| |||||||||||||||||
Sbjct 1627 AGCCCCAAGGTTAAGAGGATCAGAAACGAGACAGTTTCTCCTTTGGAGTCAGTAGACAAG 1686
Query 2006 TTTGATATTCGAAGAATGCACATGGAAACCAAACCATAG 2044
|||||||| |||||||||| | |||||||||||||||||
Sbjct 1687 TTTGATATGCGAAGAATGCGCGTGGAAACCAAACCATAG 1725
Score = 483 bits (261), Expect = 3e-135
Identities = 308/330 (93%), Gaps = 5/330 (2%)
Strand=Plus/Plus
Query 512 GATGGGTCA-AGATCCTCAGGAAGTGGCAGAGGACTGTCGACAACGGCTGTATCAAATGG 570
||||||| | |||||||||||||||||| ||||||| |||||||| ||||||||||| ||
Sbjct 343 GATGGGT-ATAGATCCTCAGGAAGTGGCGGAGGACTATCGACAACTGCTGTATCAAACGG 401
Query 571 TGGATGGAGAACCCGTGGGTTTTTGCGCGGTTGGCAGATCCAGAATACCTTATTTAACAA 630
||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 402 TGGATGGAGAATCCGTGGTTTTTTGCGCGGTTGGCAGATCCAGAATACCTTATTTAACA- 460
Query 631 CATCAAGTTCATGATTCTCTGCTGCTTCGTGACCATTCTCATCCTACTTGGCACAATCCG 690
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 461 --TCAAGATCATGATTCTCTGCGGCTTCGTGACCATTCTCATCCTACTTGGCACAATCAG 518
Query 691 TGTTGGGAACCTTGGAAGCTCCAACGCCGACTCTGTTAATCAGAGTTTCATCAAGGAAAC 750
| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 519 TATTGGGAACTTTGGAAGCTCCAACGCCGACTCTGTTAATCGGAGTTTCATCAAGGAAAC 578
Query 751 CATTCCGATTCTCGCGGAGATCCCCTCTGATTCGCATTCGACGGACTTGGCTGAGCCTCC 810
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 579 CATTCCGATTCTTGCGGAGATCCCATCTGATTCGCATTCGACGGACTTGGCTGAGCCGCC 638
Query 811 TAAAGCTGATGTTAGTCCCAATGCAACGTA 840
||||||||| |||||||||||||| |||||
Sbjct 639 TAAAGCTGAGGTTAGTCCCAATGCGACGTA 668
Score = 246 bits (133), Expect = 5e-64
Identities = 154/164 (94%), Gaps = 1/164 (1%)
Strand=Plus/Plus
Query 96 GTATAGACTACGCCTTTAAGCTGTTAAGAAATCTCGTATATAGAGAAGGGACTGTGACAC 155
||||| |||| ||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 92 GTATACACTATGCCTTTAAGCTGTTAAGAAATCTCGTATATAGACAAGGGACTATGACGT 151
Query 156 CTGGCAATGATGAAACAGCACATGTTATAGAGGAGCTTGAAAACGAAAATGTTGTGGAAG 215
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 152 TTGGCAATGATGAAACAGCACATGTTATAGAGGAGCTTGAAAAAGAAAATGTTGTGAAAG 211
Query 216 ATTTTGCAAATATAACTTCGCCTGCTGGGAAGTCGTTTCTTATG 259
|||||||||||||||||||||||||||| |||||||||||||||
Sbjct 212 ATTTTGCAAATATAACTTCGCCTGCTGG-AAGTCGTTTCTTATG 254
Score = 69.4 bits (37), Expect = 1e-10
Identities = 41/43 (95%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 422 TTAGACCGTGTCTGGATTCAAGTGCCATCTGGAGGTCTCTCCC 464
|||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 299 TTAGACTGTGTCCGGATTCAAGTGCCATCTGGAGGTCTCTCCC 341
> Ahg476571 jgi|Araly1|476571|fgenesh2_kg.2__1701__AT1G74380.1
Length=1838
Score = 1116 bits (604), Expect = 0.0
Identities = 946/1113 (85%), Gaps = 15/1113 (1%)
Strand=Plus/Plus
Query 959 GAGATCCCATCTGATTCGCATTTGACAGACTTGCTTGAGCCGCCTAAAGCTGATATTAGT 1018
||||||| |||||||||| || || |||||| |||||| | ||| |||||| | |
Sbjct 514 GAGATCCGATCTGATTCGGATCCAACTGACTTGGATGAGCCTCAGGAAGGTGATATGAAT 573
Query 1019 CCCAATGCGACATATACTCTAGGGCCCAAAATCACCAACTGGGATAGTCAACGCAAGGTA 1078
||||||||||| ||| ||| ||||| || ||||| | |||||||||||||| ||||||
Sbjct 574 CCCAATGCGACGTATGTTCTTGGGCCTAAGATCACGGATTGGGATAGTCAACGTAAGGTA 633
Query 1079 TGGCTGAATCAGAACCCTGAGTTTCCTAATATTGTCAATGGCAAAGCTCGAATATTGCTT 1138
||| |||||||||| ||||||||||||| || ||||||||||||||||||||| ||||||
Sbjct 634 TGGTTGAATCAGAATCCTGAGTTTCCTAGTACTGTCAATGGCAAAGCTCGAATCTTGCTT 693
Query 1139 CTCACAGGGTCTTCCCCCGGA-CCCTGTGATAAACCAATTGG-AAACTATTATCTATTGA 1196
| ||||| || ||| ||| | || || ||||| || ||||| | | ||||||| ||||
Sbjct 694 TTAACAGGATC-TCCTCCGAAGCCTTGCGATAACCCGATTGGTGATC-ATTATCTGTTGA 751
Query 1197 AAGCTGTGAAGAACAAGATTGATTACTGTAGACTCCACGGGATAGAGATTGTGTATAACA 1256
|| |||| ||||||||||||||||| ||||| || || ||||| ||||||||||||||||
Sbjct 752 AATCTGTAAAGAACAAGATTGATTATTGTAGGCTTCATGGGATTGAGATTGTGTATAACA 811
Query 1257 TGGCGAATTTGGATGAGGAACTCTCAGGGTATTGGACGAAATTACCTATGATTAGGACAT 1316
|||| |||||||| |||||||| | ||||||||| ||||||| || |||||||||| |
Sbjct 812 TGGCTCATTTGGATAAGGAACTCGCTGGGTATTGGGCGAAATTGCCGATGATTAGGAGGT 871
Query 1317 TAATGCTGTCTCATCCAGAAGTAGAATGGATTTGGTGGATGGATAGTGATGCTTTGTTCA 1376
| ||||| |||||||||||||| || ||||| ||||||||||||||||||||||||||||
Sbjct 872 TGATGCTCTCTCATCCAGAAGTTGAGTGGATCTGGTGGATGGATAGTGATGCTTTGTTCA 931
Query 1377 CTGATATACTGTTTGAGATCCCGTTGCCTCGGTACGAAAATCATAATCTGGTGATACACG 1436
|||||||||||||| ||||||| ||| || |||| || || |||||||| ||||| ||||
Sbjct 932 CTGATATACTGTTTCAGATCCCTTTGGCTAGGTATGAGAAGCATAATCTCGTGATTCACG 991
Query 1437 GTTATCCAGACTTGCTGTTCAACCAAAAATCATGGGTTGCATTGAACACGGGTA-TCTTT 1495
||||||| ||||||||||| | || || || ||| |||| |||||||| |||| | |||
Sbjct 992 GTTATCCGGACTTGCTGTTTGATCAGAAGTCGTGGATTGCTTTGAACACTGGTAGT-TTT 1050
Query 1496 CTGTTGAGAAATTGTCAGTGGTCATTGGATTTATTAGATGCTTGGGCCCCAATGGGACCA 1555
||| |||| |||||||||||||| |||||||| |||||||||||||| |||||||||||
Sbjct 1051 CTGCTGAGGAATTGTCAGTGGTCGTTGGATTTGTTAGATGCTTGGGCGCCAATGGGACCT 1110
Query 1556 AAAGGGA-AGATCCGTGACGAAACTGGGAAGATACTGACAGCTTATCTGAAAGGCAGGCC 1614
|||||| | || ||||| || | |||||| || |||| |||||||||||||| || ||
Sbjct 1111 AAAGGGCCA-ATTCGTGATGAGGCCGGGAAGGTATTGACGGCTTATCTGAAAGGTAGACC 1169
Query 1615 AGCATTTGAGGCCGATGATCAATCGGCGTTGATATATCTCTTGCTTTCGCAGAAGGAAAA 1674
||| |||||||| |||||||| || |||||||| |||||| ||||||| ||||| || |
Sbjct 1170 AGCTTTTGAGGCAGATGATCAGTCAGCGTTGATCTATCTCCTGCTTTCTCAGAAAGATAC 1229
Query 1675 ATGGATAGAGAAGGT-TTATGTGGAGAATCAATACTACTTGCACGGGTTTTGGGAAGGTT 1733
|||||| ||||| || || |||||||||||||||||| || |||||||||||||||||||
Sbjct 1230 ATGGATGGAGAAAGTGTT-TGTGGAGAATCAATACTATTTACACGGGTTTTGGGAAGGTT 1288
Query 1734 TGGTTGACAGGTATGAAGAGATGATAGAGAAGTATCATCCAGGATTGGGCGATGAGAGAT 1793
||||||| || ||||| |||||||||||||||||||| || |||||||| ||||||||||
Sbjct 1289 TGGTTGATAGATATGAGGAGATGATAGAGAAGTATCACCCGGGATTGGGTGATGAGAGAT 1348
Query 1794 GGCCCTTTGTGACACATTTTGTAGGGTGCAAACCGTGTGGCAGCTATGCTGATTACGCAG 1853
|||| |||||||| ||||| || ||||| ||||| ||||| |||||||||||||| ||||
Sbjct 1349 GGCCGTTTGTGACCCATTTCGTTGGGTGTAAACCATGTGGTAGCTATGCTGATTATGCAG 1408
Query 1854 TCGATAGATGCTTCAAGAGCATGGAGAGGGCTTTTAATTTTGCAGATAATCAAGTGCTGA 1913
|||| || ||||| ||||||||||||||||| || ||||||||||| |||||||| || |
Sbjct 1409 TCGAGAGGTGCTTGAAGAGCATGGAGAGGGCCTTCAATTTTGCAGACAATCAAGTTCTCA 1468
Query 1914 AGCTGTATGGGTTTAGCCACAGGGGACTGTTGAGTCCCAAGATTAAAAGGATCAGAAATG 1973
|||||||||| ||| |||| |||||| ||||||| ||||||||||| |||||||||||||
Sbjct 1469 AGCTGTATGGTTTTGGCCATAGGGGATTGTTGAGCCCCAAGATTAAGAGGATCAGAAATG 1528
Query 1974 AGACAGTCTCTCCTCTGGAGTCAGTAGACAAGTTTGATATTCGAAGAATGCACA-TGGAA 2032
|||||||| ||||| |||||| |||||||||||||||||||| |||| ||| | |||||
Sbjct 1529 AGACAGTCACTCCTTTGGAGTTTGTAGACAAGTTTGATATTCGCAGAACGCA-AGTGGAA 1587
Query 2033 ACCAAACCATAGAGCTAG-G-AAAATCAATGAG 2063
|||||||| ||| |||| | |||| ||| |||
Sbjct 1588 CCCAAACCACAGAACTAGAGGAAAA-CAAGGAG 1619
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85550690270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5