BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G18710.1 Length=1119 Score E Sequences producing significant alignments: (Bits) Value Ahg335126 jgi|Araly1|335126|fgenesh1_pg.C_scaffold_1001691 1131 0.0 Ahg335127 jgi|Araly1|335127|fgenesh1_pg.C_scaffold_1001692 440 1e-122 > Ahg335126 jgi|Araly1|335126|fgenesh1_pg.C_scaffold_1001691 Length=816 Score = 1131 bits (612), Expect = 0.0 Identities = 757/823 (92%), Gaps = 26/823 (3%) Strand=Plus/Plus Query 188 ATGGGGAGGACGACATGGTTCGACGTCGACGGGATGAAGAAAGGAGAGTGGACGGCAGAG 247 |||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||| Sbjct 1 ATGGGGAGGACGACGTGGTTCGACGACGACGGGATGAAGAAAGGAGAGTGGACGGCGGAG 60 Query 248 GAAGACCAGAAGCTCGGCGCTTACATCAACGAGCATGGCGTTTGTGATTGGCGTTCCCTC 307 |||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||| Sbjct 61 GAAGACCAGAAGCTCGTCGCTTACATCAACGAGCATGGCATCTGTGATTGGCGTTCCCTC 120 Query 308 CCCAAAAGAGCTGGTTTGCAGAGATGTGGAAAGAGCTGCAGATTAAGGTGGCTTAACTAT 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CCCAAAAGAGCTGGTTTGCAGAGATGTGGAAAGAGCTGCAGATTAAGGTGGCTTAACTAT 180 Query 368 CTAAAGCCTGGGATTAGAAGAGGCAAATTCACTCCTCAAGAAGAAGAAGAAATCATCCAA 427 |||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| Sbjct 181 CTAAGGCCTGGGATTAGAAGAGGCAAATTCACTCCTCAGGAAGAAGAAGATATCATCCAA 240 Query 428 CTTCATGCTGTTCTCGGAAACAGGTGGGCAGCCATGGCGAAGAAGATGCAGAATCGAACA 487 ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||| Sbjct 241 CTTCATGCTGTTCTCGGAAACAGGTGGGCAGCCATAGCGAAGCAGATGCAGAATCGGACA 300 Query 488 GACAATGATATCAAGAACCATTGGAACTCTTGTCTCAAGAAAAGACTTTCGAGAAAGGGA 547 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 GACAATGATATCAAGAACCATTGGAACTCTTGTCTCAAGAAAAGACTTTCGAGAAAGGGA 360 Query 548 ATCGACCCTATGACCCACGAGCCCATCATCAAACACCTCACCGTCAATACCACTAACGCA 607 |||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||| Sbjct 361 ATCGACCCGATGACCCACGAGCCCATCATCAAACACCTCACTATCAAGACCACTAACGCA 420 Query 608 GATTGTGGTAACTCTTCCACCACGACGTCCCCGTCGACGACGGAAAGCTCTCCTTCCTCC 667 |||||| ||| ||||||||||||||||||||| ||| | ||||||| ||| ||||||| Sbjct 421 GATTGTAGTAGCTCTTCCACCACGACGTCCCCATCG-CT--GGAAAGCCCTCATTCCTCC 477 Query 668 GGCTC-GTCTCGTCTTCTTAACAAACTCGCCGCAGGTATCTCATCTAGACAACATAGTCT 726 ||||| | ||||||| || ||||| ||||||||||||||||||||||||||||| ||||| Sbjct 478 GGCTCAG-CTCGTCTCCTCAACAAGCTCGCCGCAGGTATCTCATCTAGACAACACAGTCT 536 Query 727 CGATAGGATCAAGTACATCTTGTCGAATTCAATAATCGAAAGCAGTGATCAAGCaaaaga 786 |||| |||||||||||||||| ||||| |||||||||||||||||||||||| |||||| Sbjct 537 CGATCGGATCAAGTACATCTTCTCGAACCCAATAATCGAAAGCAGTGATCAAGTAAAAGA 596 Query 787 ggaagaagaa-aaa--gaagaag-a-a-gaa---gaagaa--aga-ga------TTCAAT 828 |||||||||| ||| ||||||| | | ||| |||||| ||| || |||||| Sbjct 597 GGAAGAAGAAGAAAAAGAAGAAGGAGAAGAAAAAGAAGAAGGAGAAGAAAAAGATTCAAT 656 Query 829 GATGGGTCAGAAGATTGACGGTAGTGAAGGAGAAGATATTCAGATTTGGGGCGAGGAGGA 888 ||||| ||||||||||||||||||||||||||| ||||||||||| |||| || |||||| Sbjct 657 GATGGATCAGAAGATTGACGGTAGTGAAGGAGATGATATTCAGATATGGGACGTGGAGGA 716 Query 889 AGTTAGGCGTTTAATGGAGATTGATGCAATGGATATGTACGAGATGACTTCGTACGACGC 948 ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| Sbjct 717 AGTTAGGCGTTTAATGGAGATTGGTGCAATGGA---GTACGAGATGACTTCGTACGACGC 773 Query 949 TGTCATGTACGAGAGTAGTCACATACTTGATCATCTCTTTTGA 991 |||||||||||| |||| ||||||||||||||||||||| ||| Sbjct 774 TGTCATGTACGACAGTACTCACATACTTGATCATCTCTTCTGA 816 > Ahg335127 jgi|Araly1|335127|fgenesh1_pg.C_scaffold_1001692 Length=777 Score = 440 bits (238), Expect = 1e-122 Identities = 487/604 (81%), Gaps = 30/604 (5%) Strand=Plus/Plus Query 188 ATGGGGAGGA-CGACATGGTTCGACGTCGACGGGATGAAGAAAGGAGAGTGGACGGCA-G 245 ||||||| || |||| |||||||| | |||||||| ||||| |||||| ||||||| | | Sbjct 1 ATGGGGA-GAGCGACGTGGTTCGATGCCGACGGGACGAAGAGAGGAGAATGGACGG-AGG 58 Query 246 AGGAAGACCAGAAGCTCGGCGCTTACATCAACGAGCATGGCGTTTGTGATTGGCGTTCCC 305 ||||||||||||| |||| |||||| ||| |||| | ||||| |||| ||||||| || Sbjct 59 AGGAAGACCAGAAACTCGTCGCTTATATCGACGAATACGGCGTCGGTGACTGGCGTTTCC 118 Query 306 TCCCCAAAAGAGCTGGTTTGCAGAGATGTGGAAAGAGCTGCAGATTAAGGTGGCTTAACT 365 |||| ||||||||||||| |||||||||||||||||||||||||||||||||||| | Sbjct 119 TCCCTGGCAGAGCTGGTTTGCGGAGATGTGGAAAGAGCTGCAGATTAAGGTGGCTTAATT 178 Query 366 ATCTAAAGCCTGGGATT-AGAAGAGGCAAATTCACTCCTCAAGAAGAAGAAGAAATCATC 424 |||||| |||||||||| |||| ||||||||||||||||||||||||| ||| ||||| Sbjct 179 ATCTAAGGCCTGGGATTAAGAA-AGGCAAATTCACTCCTCAAGAAGAACAAGCTATCAT- 236 Query 425 CAACTT-CATGCTGTTCTCGGAAACAGGTGGGCAGCCATGGCGAAGAAGATGCAGAATCG 483 ||| || ||| |||||||||| ||||||||||||||||| ||| || |||||| ||||| Sbjct 237 CAATTTACATTCTGTTCTCGGGAACAGGTGGGCAGCCATAGCGCAGCAGATGCCCAATCG 296 Query 484 AACAGACAATGATATCAAGAACCATTGGAACTCTTGTCTCAAGAAAAGACTTTCGAGAAA 543 | |||||||||| |||||||||||||||||||||||||||||||||||||| |||||| Sbjct 297 ATCAGACAATGACATCAAGAACCATTGGAACTCTTGTCTCAAGAAAAGACTAGAGAGAAA 356 Query 544 GGGAATCGACCCTATGACCCACGAGCCCATCATCAA-ACACCTCACCGTCAATAC-C--- 598 ||| | ||||| ||||||||| |||| |||||||| | || || ||||||| || | Sbjct 357 CGGACTTGACCCAATGACCCACCAGCCTATCATCAATA-ACGTCGCCGTCAAAACTCCGT 415 Query 599 -ACT-AACGCAGATTGTGGTAACTCTTCCACCACGACGTCCCCGTCGA-CGACGGAAAGC 655 | | ||| |||| || | | |||||| || ||| | | ||| | | | | Sbjct 416 TATTTAACACAGAATGCAGCAGCTCTTCTTCCGCGAGGGCGA-GTCCATCTTCTTCCTCC 474 Query 656 T-CTCCT--TCCTCCGGCTC-GTCTCGTCTTCTTAACAA-ACTCGCCGCAGGTATCTCAT 710 | ||||| ||||||||||| | | | ||| |||||||| | ||||| | |||||||||| Sbjct 475 TTCTCCTCGTCCTCCGGCTCAGCC-CATCTCCTTAACAAGA-TCGCCACTGGTATCTCAT 532 Query 711 CTAGACAACA-TA-GTCT-CGATAGGATCAAGTACATCTTGTCGAATTCAATAATCGA-A 766 |||||||||| | ||| ||| | ||||||| ||||||| ||| || | | |||| | | Sbjct 533 CTAGACAACACTGTGTCGACGACATGATCAAGAACATCTTCTCGGATCCGAGAATC-ACA 591 Query 767 AGCA 770 |||| Sbjct 592 AGCA 595 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41706471198 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5