BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18710.1
Length=1119
Score E
Sequences producing significant alignments: (Bits) Value
Ahg335126 jgi|Araly1|335126|fgenesh1_pg.C_scaffold_1001691 1131 0.0
Ahg335127 jgi|Araly1|335127|fgenesh1_pg.C_scaffold_1001692 440 1e-122
> Ahg335126 jgi|Araly1|335126|fgenesh1_pg.C_scaffold_1001691
Length=816
Score = 1131 bits (612), Expect = 0.0
Identities = 757/823 (92%), Gaps = 26/823 (3%)
Strand=Plus/Plus
Query 188 ATGGGGAGGACGACATGGTTCGACGTCGACGGGATGAAGAAAGGAGAGTGGACGGCAGAG 247
|||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 1 ATGGGGAGGACGACGTGGTTCGACGACGACGGGATGAAGAAAGGAGAGTGGACGGCGGAG 60
Query 248 GAAGACCAGAAGCTCGGCGCTTACATCAACGAGCATGGCGTTTGTGATTGGCGTTCCCTC 307
|||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||
Sbjct 61 GAAGACCAGAAGCTCGTCGCTTACATCAACGAGCATGGCATCTGTGATTGGCGTTCCCTC 120
Query 308 CCCAAAAGAGCTGGTTTGCAGAGATGTGGAAAGAGCTGCAGATTAAGGTGGCTTAACTAT 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCCAAAAGAGCTGGTTTGCAGAGATGTGGAAAGAGCTGCAGATTAAGGTGGCTTAACTAT 180
Query 368 CTAAAGCCTGGGATTAGAAGAGGCAAATTCACTCCTCAAGAAGAAGAAGAAATCATCCAA 427
|||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 181 CTAAGGCCTGGGATTAGAAGAGGCAAATTCACTCCTCAGGAAGAAGAAGATATCATCCAA 240
Query 428 CTTCATGCTGTTCTCGGAAACAGGTGGGCAGCCATGGCGAAGAAGATGCAGAATCGAACA 487
||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||
Sbjct 241 CTTCATGCTGTTCTCGGAAACAGGTGGGCAGCCATAGCGAAGCAGATGCAGAATCGGACA 300
Query 488 GACAATGATATCAAGAACCATTGGAACTCTTGTCTCAAGAAAAGACTTTCGAGAAAGGGA 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GACAATGATATCAAGAACCATTGGAACTCTTGTCTCAAGAAAAGACTTTCGAGAAAGGGA 360
Query 548 ATCGACCCTATGACCCACGAGCCCATCATCAAACACCTCACCGTCAATACCACTAACGCA 607
|||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 361 ATCGACCCGATGACCCACGAGCCCATCATCAAACACCTCACTATCAAGACCACTAACGCA 420
Query 608 GATTGTGGTAACTCTTCCACCACGACGTCCCCGTCGACGACGGAAAGCTCTCCTTCCTCC 667
|||||| ||| ||||||||||||||||||||| ||| | ||||||| ||| |||||||
Sbjct 421 GATTGTAGTAGCTCTTCCACCACGACGTCCCCATCG-CT--GGAAAGCCCTCATTCCTCC 477
Query 668 GGCTC-GTCTCGTCTTCTTAACAAACTCGCCGCAGGTATCTCATCTAGACAACATAGTCT 726
||||| | ||||||| || ||||| ||||||||||||||||||||||||||||| |||||
Sbjct 478 GGCTCAG-CTCGTCTCCTCAACAAGCTCGCCGCAGGTATCTCATCTAGACAACACAGTCT 536
Query 727 CGATAGGATCAAGTACATCTTGTCGAATTCAATAATCGAAAGCAGTGATCAAGCaaaaga 786
|||| |||||||||||||||| ||||| |||||||||||||||||||||||| ||||||
Sbjct 537 CGATCGGATCAAGTACATCTTCTCGAACCCAATAATCGAAAGCAGTGATCAAGTAAAAGA 596
Query 787 ggaagaagaa-aaa--gaagaag-a-a-gaa---gaagaa--aga-ga------TTCAAT 828
|||||||||| ||| ||||||| | | ||| |||||| ||| || ||||||
Sbjct 597 GGAAGAAGAAGAAAAAGAAGAAGGAGAAGAAAAAGAAGAAGGAGAAGAAAAAGATTCAAT 656
Query 829 GATGGGTCAGAAGATTGACGGTAGTGAAGGAGAAGATATTCAGATTTGGGGCGAGGAGGA 888
||||| ||||||||||||||||||||||||||| ||||||||||| |||| || ||||||
Sbjct 657 GATGGATCAGAAGATTGACGGTAGTGAAGGAGATGATATTCAGATATGGGACGTGGAGGA 716
Query 889 AGTTAGGCGTTTAATGGAGATTGATGCAATGGATATGTACGAGATGACTTCGTACGACGC 948
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 717 AGTTAGGCGTTTAATGGAGATTGGTGCAATGGA---GTACGAGATGACTTCGTACGACGC 773
Query 949 TGTCATGTACGAGAGTAGTCACATACTTGATCATCTCTTTTGA 991
|||||||||||| |||| ||||||||||||||||||||| |||
Sbjct 774 TGTCATGTACGACAGTACTCACATACTTGATCATCTCTTCTGA 816
> Ahg335127 jgi|Araly1|335127|fgenesh1_pg.C_scaffold_1001692
Length=777
Score = 440 bits (238), Expect = 1e-122
Identities = 487/604 (81%), Gaps = 30/604 (5%)
Strand=Plus/Plus
Query 188 ATGGGGAGGA-CGACATGGTTCGACGTCGACGGGATGAAGAAAGGAGAGTGGACGGCA-G 245
||||||| || |||| |||||||| | |||||||| ||||| |||||| ||||||| | |
Sbjct 1 ATGGGGA-GAGCGACGTGGTTCGATGCCGACGGGACGAAGAGAGGAGAATGGACGG-AGG 58
Query 246 AGGAAGACCAGAAGCTCGGCGCTTACATCAACGAGCATGGCGTTTGTGATTGGCGTTCCC 305
||||||||||||| |||| |||||| ||| |||| | ||||| |||| ||||||| ||
Sbjct 59 AGGAAGACCAGAAACTCGTCGCTTATATCGACGAATACGGCGTCGGTGACTGGCGTTTCC 118
Query 306 TCCCCAAAAGAGCTGGTTTGCAGAGATGTGGAAAGAGCTGCAGATTAAGGTGGCTTAACT 365
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 119 TCCCTGGCAGAGCTGGTTTGCGGAGATGTGGAAAGAGCTGCAGATTAAGGTGGCTTAATT 178
Query 366 ATCTAAAGCCTGGGATT-AGAAGAGGCAAATTCACTCCTCAAGAAGAAGAAGAAATCATC 424
|||||| |||||||||| |||| ||||||||||||||||||||||||| ||| |||||
Sbjct 179 ATCTAAGGCCTGGGATTAAGAA-AGGCAAATTCACTCCTCAAGAAGAACAAGCTATCAT- 236
Query 425 CAACTT-CATGCTGTTCTCGGAAACAGGTGGGCAGCCATGGCGAAGAAGATGCAGAATCG 483
||| || ||| |||||||||| ||||||||||||||||| ||| || |||||| |||||
Sbjct 237 CAATTTACATTCTGTTCTCGGGAACAGGTGGGCAGCCATAGCGCAGCAGATGCCCAATCG 296
Query 484 AACAGACAATGATATCAAGAACCATTGGAACTCTTGTCTCAAGAAAAGACTTTCGAGAAA 543
| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 297 ATCAGACAATGACATCAAGAACCATTGGAACTCTTGTCTCAAGAAAAGACTAGAGAGAAA 356
Query 544 GGGAATCGACCCTATGACCCACGAGCCCATCATCAA-ACACCTCACCGTCAATAC-C--- 598
||| | ||||| ||||||||| |||| |||||||| | || || ||||||| || |
Sbjct 357 CGGACTTGACCCAATGACCCACCAGCCTATCATCAATA-ACGTCGCCGTCAAAACTCCGT 415
Query 599 -ACT-AACGCAGATTGTGGTAACTCTTCCACCACGACGTCCCCGTCGA-CGACGGAAAGC 655
| | ||| |||| || | | |||||| || ||| | | ||| | | | |
Sbjct 416 TATTTAACACAGAATGCAGCAGCTCTTCTTCCGCGAGGGCGA-GTCCATCTTCTTCCTCC 474
Query 656 T-CTCCT--TCCTCCGGCTC-GTCTCGTCTTCTTAACAA-ACTCGCCGCAGGTATCTCAT 710
| ||||| ||||||||||| | | | ||| |||||||| | ||||| | ||||||||||
Sbjct 475 TTCTCCTCGTCCTCCGGCTCAGCC-CATCTCCTTAACAAGA-TCGCCACTGGTATCTCAT 532
Query 711 CTAGACAACA-TA-GTCT-CGATAGGATCAAGTACATCTTGTCGAATTCAATAATCGA-A 766
|||||||||| | ||| ||| | ||||||| ||||||| ||| || | | |||| | |
Sbjct 533 CTAGACAACACTGTGTCGACGACATGATCAAGAACATCTTCTCGGATCCGAGAATC-ACA 591
Query 767 AGCA 770
||||
Sbjct 592 AGCA 595
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41706471198
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5