BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18720.1
Length=913
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920808 jgi|Araly1|920808|scaffold_102089.1 1048 0.0
> Ahg920808 jgi|Araly1|920808|scaffold_102089.1
Length=664
Score = 1048 bits (567), Expect = 0.0
Identities = 636/669 (95%), Gaps = 6/669 (1%)
Strand=Plus/Plus
Query 69 CTCTTCCTCAACGAATT-TTTTATCCATGAGTCGCATAATGGGATTGTTCGATCTCGAGA 127
||||||||||| |||| || | ||||||||||||| ||||||||||||||||||||||
Sbjct 1 CTCTTCCTCAA--AATTCATTCA-CCATGAGTCGCATGATGGGATTGTTCGATCTCGAGA 57
Query 128 AACACTTCGCCTTCTACGGTGCTTACCATAGCAATCCGATCAACATTCTAATCCACATCA 187
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 58 AACACTTCGCCTTCTACGGTGCTTACCACAGCAATCCGATCAACATTCTAATCCACATCA 117
Query 188 TCTTCGTTTGGCCAATCTTCTTCTCAGTTTTACTTCTCCTCCACTCGTCGACCCCAATTT 247
||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||
Sbjct 118 TCTTCGTTTGGCCAATCGTCTTCTCAGCTTTACTTCTCCTCCACTCATCGACCCCAATTT 177
Query 248 TCGACCCCTCTCAATTAGGGTTTTCTCAATCGTTGACCCTCGACGGCGTTTTGCGATTTA 307
|||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 178 TCGATCCTTCTCAATTAGGGTTTTCTCAATCGTTGACCCTCGACGGCGTTCTGCGATTTA 237
Query 308 ACGTTGGGTTTATATTCGCCTTGATTTATGCTCTGTTCTATATCGGTTTGGATAAGAAAT 367
||||||||||||||||| |||||||||||||||||||||| || ||||||||||| ||||
Sbjct 238 ACGTTGGGTTTATATTCACCTTGATTTATGCTCTGTTCTACATTGGTTTGGATAAAAAAT 297
Query 368 CTGGATTTGTAGCTGCTCTTATGTGTTTCTCTTGCTGGGTTGGTTCCAGTTTTCTTGCTG 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 298 CTGGATTTGTAGCTGCTCTTATGTGTTTCTCTTGCTGGGTTGGTTCCAGTTTTCTCGCTG 357
Query 428 TTCGACTAGGATCTTCTCTTGCCTTAAAGGTTGGGTTAGCATCTCAGCTGTTATGTTGGA 487
|||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 358 CTCGATTAGGATCTTCTCTTACCTTTAAGGTTGGGTTAGCATCTCAGCTGTTATGTTGGA 417
Query 488 CCGGGCAGTTCGTTGGCCATGGAGTATTCGAGAAACGGGCACCTGCGCTGTTAGACAATT 547
||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||
Sbjct 418 CCGGGCAGTTCGTTGGCCATGGAGTGTTCGAGAAACGAGCACCTGCGCTATTAGACAATT 477
Query 548 TACTCCAAGCTTTTCTCATGGCTCCTTTCTTCGTGTTGCTCGAGGTTCTTCAATCGGTTT 607
|| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 478 TAGTCCAAGCTTTTCTCATGGCTCCTTTCTTCGTGTTGCTCGAGGTTCTTCAGTCAGTTT 537
Query 608 TCGGGTATGAACCATATCCCGGTTTTCAAGCGCGTGTGAATGCCAAGGTAGAAAGTGACA 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TCGGGTATGAACCATATCCCGGTTTTCAAGCGCGTGTGAATGCCAAGGTAGAAAGTGACA 597
Query 668 TCAAGGAATATAGGGCAAAGAAGCAGAAGAAGAATAAGATCACATAAGCTTGGATTATAT 727
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 598 TCAAGGAATATAGGGCAAATAAGCAGAAGAAGAATAAGATCACATAAGTTTGGATTATAT 657
Query 728 ATAACTGAA 736
| | |||||
Sbjct 658 A-A-CTGAA 664
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33853150296
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5