BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G18730.1

Length=672
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg472098 jgi|Araly1|472098|fgenesh2_kg.1__2052__AT1G18730.3        1000    0.0  


> Ahg472098 jgi|Araly1|472098|fgenesh2_kg.1__2052__AT1G18730.3
Length=659

 Score = 1000 bits (541),  Expect = 0.0
 Identities = 605/636 (95%), Gaps = 4/636 (1%)
 Strand=Plus/Plus

Query  1    CTCCATTGCCACCATCAAGAAGTAACAATGGCTGAAGCTTTCACAAGTTTCACCTTCACA  60
            ||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  1    CTCCACTGACACCATCAAGAAGTAACAATGGCTGAAGCTTTCACAAGTTCCACCTTCACA  60

Query  61   AATCTTCATATTCCTTCTTCCTACAATCACTCGCCGAAGCAGAATTCAGGACCGAATCAT  120
            ||||||||||| |||||||||| || ||||||||| ||||||| ||||||||| ||||||
Sbjct  61   AATCTTCATATCCCTTCTTCCTCCAGTCACTCGCCTAAGCAGATTTCAGGACCAAATCAT  120

Query  121  GGATATTGGCTATCTAAGAATGTTAATGAGAAGAGGGAAAGGAATTTGATGAGAGGAAGC  180
            |||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||| 
Sbjct  121  GGATATTGGCTATCTATGAAAGTTAATGAGAAGAGGGAAAAGAATTTGATGAGAGGAAGA  180

Query  181  TTATGTGTAAGAAAGGCATTGCCACATGATTTGCCATTAATGGCTGTGATGGTTCAACAA  240
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  181  TTATGTGTAAGAAAGGCATTGCCACATGATTTGCCATTAATGGCAGTGATGGTTCAACAA  240

Query  241  ATAGAAGGAATGCGTGATATCATTACAGAGAAACACGTGTGGCATCTAAGTGATAAAGCT  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  ATAGAAGGAATGCGTGATATCATTACAGAGAAACACGTGTGGCATCTAAGTGATAAAGCT  300

Query  301  ATCAAGAATGTTTATATGTTCTACATCATGTTCACTTGTTGGGGATGTTTGTACTTCGGT  360
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  ATCAAGAATGTCTATATGTTCTACATCATGTTCACTTGTTGGGGATGTTTGTACTTCGGT  360

Query  361  TCAGCAAAAGATCCATTCTACGACTCAGAGGAGTACCGTGGAGATGGAGGGGATGGAACT  420
            || ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct  361  TCCGCAAAAGATCCATTCTATGACTCGGAGGAGTACCGTGGAGATGGAGGGGATGGAACT  420

Query  421  GGATATTGGGTCTATGAAACTCAAGAAGACATAGAAGAGAAAGCAAGAGCGGAGCTATGG  480
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  421  GGATATTGGGTCTATGAAACTCAAGAAGACATAGAAGAGAAAGCAAGAGCAGAGCTATGG  480

Query  481  CGTGAAGAACTTATCGAAGAAATTGAACAGAAGGTTGGTGGCTTAAGAGAGCTTGAAGAA  540
            |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  481  CGTGAAGAACTTATTGAAGAAATTGAACAGAAAGTTGGTGGCTTAAGAGAGCTTGAAGAA  540

Query  541  GCTGTTACTAAGTAGAAAACTAACTTGTGAATCATAAACC-ACTTTACATACACATtata  599
            |||||||||||||||||||||||||||| ||||||||| | | || |||||||||| |||
Sbjct  541  GCTGTTACTAAGTAGAAAACTAACTTGTAAATCATAAATCTAATTCACATACACAT-ATA  599

Query  600  tattt-tcttatatcagtcatgcaacattatatata  634
            | ||| |||||||| |||||| ||||||||||||||
Sbjct  600  T-TTTGTCTTATATGAGTCATACAACATTATATATA  634



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24665527299


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5