BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G18760.1

Length=675
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg472102 jgi|Araly1|472102|fgenesh2_kg.1__2056__AT1G18770.1         331    4e-90
  Ahg920819 jgi|Araly1|920819|scaffold_102100.1                        327    5e-89


> Ahg472102 jgi|Araly1|472102|fgenesh2_kg.1__2056__AT1G18770.1
Length=327

 Score =  331 bits (179),  Expect = 4e-90
 Identities = 213/229 (93%), Gaps = 3/229 (1%)
 Strand=Plus/Plus

Query  450  ACCCGCAAACAAGCTCGTGGTCAATTCTTTAGCCAGGAAAATATACAAGAAGACCACTAG  509
            |||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct  99   ACCCGCAAGCAAGCTCGTGGTCAAGTCTTTAGCCAGGAAAATATACAAGACGACCACTAG  158

Query  510  TTCTAC---TGAAAGGTGCACAATTTGTTTGGAAGAGTTTAACGATGGAACAAAAGTTAT  566
            ||||||   ||||||||||||||||||||||||||||||||| ||||||| || |||| |
Sbjct  159  TTCTACGGGTGAAAGGTGCACAATTTGTTTGGAAGAGTTTAATGATGGAAGAAGAGTTGT  218

Query  567  GACTTTACCTTGCGGACATGAATTTGACGATGAGTGTGTCCTAACGTGGTTTGAGACTAA  626
            |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  219  GACTTTGCCTTGCGGACATGAATTTGACGATGAGTGTGTCCTAACGTGGTGTGAGACTAA  278

Query  627  TCATGACTGTCCACTGTGTCGTTTCAAGTTGCCATGTGAAGATCAATGA  675
            ||| || |||||| |||||||||||||||||||||||| ||||||||||
Sbjct  279  TCACGATTGTCCATTGTGTCGTTTCAAGTTGCCATGTGGAGATCAATGA  327


> Ahg920819 jgi|Araly1|920819|scaffold_102100.1
Length=1075

 Score =  327 bits (177),  Expect = 5e-89
 Identities = 273/319 (86%), Gaps = 8/319 (3%)
 Strand=Plus/Plus

Query  361   ATTGAAGAAGAGGATTTGAG-TGAAGAAG-AGGAT-CAAATTGAAGAAGCGGTTCGAGCC  417
             ||||||||||||| ||  || |||||||| | | | ||||||||||||||||| | |  |
Sbjct  741   ATTGAAGAAGAGG-TTCAAGTTGAAGAAGCA-G-TCCAAATTGAAGAAGCGGTACAAATC  797

Query  418   TCCTTGGAGGAGACCAATAATATCAGTTTGAGACCCGCAAACAAGCTCGTGGTCAATTCT  477
             || || || ||||||| ||| ||| ||||||||||||||| | || |||||||||| || 
Sbjct  798   TCGTTTGACGAGACCACTAACATCTGTTTGAGACCCGCAAGCGAGGTCGTGGTCAAGTCC  857

Query  478   TTAGCCAGGAAAATATACAAGAAGACCA-CTAGTTCTACTGAAAGGTGCACAATTTGTTT  536
             ||| |||||||||||||| ||||||  | || || ||  | |||  ||||||||||||||
Sbjct  858   TTAACCAGGAAAATATACGAGAAGATTAGCT-GTACTGGTCAAAAATGCACAATTTGTTT  916

Query  537   GGAAGAGTTTAACGATGGAACAAAAGTTATGACTTTACCTTGCGGACATGAATTTGACGA  596
             ||| |||||||||||||||| || |||| ||||||||||||| |||||||| ||||||||
Sbjct  917   GGAGGAGTTTAACGATGGAAGAAGAGTTGTGACTTTACCTTGTGGACATGACTTTGACGA  976

Query  597   TGAGTGTGTCCTAACGTGGTTTGAGACTAATCATGACTGTCCACTGTGTCGTTTCAAGTT  656
             |||||||||||||| |||||||||||| ||||| || ||||| |||||||||||||||||
Sbjct  977   TGAGTGTGTCCTAAAGTGGTTTGAGACCAATCACGATTGTCCTCTGTGTCGTTTCAAGTT  1036

Query  657   GCCATGTGAAGATCAATGA  675
             |||||||||||||||||||
Sbjct  1037  GCCATGTGAAGATCAATGA  1055



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24779896050


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5