BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18770.1
Length=321
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472102 jgi|Araly1|472102|fgenesh2_kg.1__2056__AT1G18770.1 401 1e-111
Ahg920819 jgi|Araly1|920819|scaffold_102100.1 243 8e-64
Ahg341444 jgi|Araly1|341444|fgenesh1_pg.C_scaffold_3001207 187 4e-47
> Ahg472102 jgi|Araly1|472102|fgenesh2_kg.1__2056__AT1G18770.1
Length=327
Score = 401 bits (217), Expect = 1e-111
Identities = 283/315 (90%), Gaps = 4/315 (1%)
Strand=Plus/Plus
Query 1 ATGAAAATATATTT-TAGCCACAGTATCATACGCAATCCTCAACCAGAAAACGAGGGCAC 59
|||| | ||||||| || ||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1 ATGAGAGTATATTTGTA-CCACAATATCATACGCAATCCTCAACCAGAAAACGCCGGCAC 59
Query 60 AATCACAGTAAATGCAAAGATCGACGGTTACAATCCCACGCCCGCAAGCAAGCTCGTGGT 119
||||||| | |||||||||||||||||||||||| | || ||||||||||||||||||||
Sbjct 60 AATCACAATCAATGCAAAGATCGACGGTTACAATTCGACACCCGCAAGCAAGCTCGTGGT 119
Query 120 CAAGTCTTTAGCCAGGAAGATATACAAGATGACCACTAGTTCTACTGGTGAAATGTGCAT 179
|||||||||||||||||| |||||||||| ||||||||||||||| ||||||| |||||
Sbjct 120 CAAGTCTTTAGCCAGGAAAATATACAAGACGACCACTAGTTCTACGGGTGAAAGGTGCAC 179
Query 180 AATTTGTTTGGAAGAGTTTAGTGAAGGAAGAAGAGTTGTTACTTTACCTTGTGGACATGA 239
|||||||||||||||||||| ||| |||||||||||||| ||||| ||||| ||||||||
Sbjct 180 AATTTGTTTGGAAGAGTTTAATGATGGAAGAAGAGTTGTGACTTTGCCTTGCGGACATGA 239
Query 240 CTTTGACGATGAGTGTGTCCTAAAGTGGTTTGAGACCAATCAC-AGTTGCCCCCTCTGTC 298
|||||||||||||||||||||| ||||| |||||| |||||| | ||| || | ||||
Sbjct 240 ATTTGACGATGAGTGTGTCCTAACGTGGTGTGAGACTAATCACGA-TTGTCCATTGTGTC 298
Query 299 GTTTCAAGTTGCCAT 313
|||||||||||||||
Sbjct 299 GTTTCAAGTTGCCAT 313
> Ahg920819 jgi|Araly1|920819|scaffold_102100.1
Length=1075
Score = 243 bits (131), Expect = 8e-64
Identities = 188/215 (87%), Gaps = 5/215 (2%)
Strand=Plus/Plus
Query 100 CCCGCAAGCAAGCTCGTGGTCAAGTCTTTAGCCAGGAAGATATACAAGATGACCACTAGT 159
||||||||| || ||||||||||||| ||| ||||||| |||||| || || | |||
Sbjct 831 CCCGCAAGCGAGGTCGTGGTCAAGTCCTTAACCAGGAAAATATAC--GA-GAAGATTAGC 887
Query 160 TCTACTGGTGAAATGTGCATAATTTGTTTGGAAGAGTTTAGTGAAGGAAGAAGAGTTGTT 219
| ||||||| ||| |||| |||||||||||| ||||||| || ||||||||||||||
Sbjct 888 TGTACTGGTCAAAAATGCACAATTTGTTTGGAGGAGTTTAACGATGGAAGAAGAGTTGTG 947
Query 220 ACTTTACCTTGTGGACATGACTTTGACGATGAGTGTGTCCTAAAGTGGTTTGAGACCAAT 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 948 ACTTTACCTTGTGGACATGACTTTGACGATGAGTGTGTCCTAAAGTGGTTTGAGACCAAT 1007
Query 280 CAC-AGTTGCCCCCTCTGTCGTTTCAAGTTGCCAT 313
||| | ||| || || |||||||||||||||||||
Sbjct 1008 CACGA-TTGTCCTCTGTGTCGTTTCAAGTTGCCAT 1041
> Ahg341444 jgi|Araly1|341444|fgenesh1_pg.C_scaffold_3001207
Length=948
Score = 187 bits (101), Expect = 4e-47
Identities = 180/216 (83%), Gaps = 13/216 (6%)
Strand=Plus/Plus
Query 103 GCAAGCAAGCTCGTGGTCAAGTCTTTAGCCAGG-AAGATATACAAGATGACCACTAGTTC 161
||||||||||||||||||||||| ||| ||||| || |||||| | | || | | ||
Sbjct 724 GCAAGCAAGCTCGTGGTCAAGTCCTTAACCAGGGAA-ATATACGACAAGATTA--A-TTA 779
Query 162 TACTGGTGAAATG-TGCATAATTTGTTTGGAAGAGTTTAGTGAA-GGAAGAAGAGTTGTT 219
||| || |||| | |||| ||||||| |||||||||||| || ||| ||||| ||||
Sbjct 780 TACAGGCGAAA-GATGCACAATTTGTCTGGAAGAGTTTAAC-AATGGAGGAAGACTTGTG 837
Query 220 ACTTTACCTTGTGGACATGACTTTGACGATGAGTGTGTCC-TAAAGTGGTTTGAGACCAA 278
|||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 838 GCTTTACCTTGTGGACATGACTTTGACGATGAGTGTG-CCGTAAAGTGGTTTGAGACCAA 896
Query 279 TCACAGTT-GCCCCCTCTGTCGTTTCAAGTTGCCAT 313
|||| ||| | || || ||||||| | |||||||||
Sbjct 897 TCAC-GTTTGTCCACTGTGTCGTTACGAGTTGCCAT 931
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11332209933
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5