BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18780.1
Length=978
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920818 jgi|Araly1|920818|scaffold_102099.1 470 1e-131
> Ahg920818 jgi|Araly1|920818|scaffold_102099.1
Length=1307
Score = 470 bits (254), Expect = 1e-131
Identities = 376/436 (86%), Gaps = 4/436 (1%)
Strand=Plus/Plus
Query 543 GGATGACTACAATGATTAC-TTTCCTTACGAAGAAGCATCTTCATCTCAGCTTGGAGAAG 601
|||||| ||| ||| | || ||||| | ||||||||| || |||||||||||||||||
Sbjct 852 GGATGATTACGATGCTAACTTTTCC-CATGAAGAAGCAACTCCATCTCAGCTTGGAGAAT 910
Query 602 TTGTTCTATTCCACGGGTTGCCACACTTAAGGGATGAGCACCATGCTAGCTTTGGCTTCG 661
|||||| |||| ||||| || ||| |||| || | | ||| |||||||||||| ||| |
Sbjct 911 TTGTTCCATTCTACGGGCTGTCACGCTTATTGGTTCATCACGATGCTAGCTTTGACTTTG 970
Query 662 ATCATCAAATTGAAGAAGCGTCTCATTCTCAGATTGAAGAAGTTTTTCAAGTTTCGTTCA 721
||||||||| ||| ||||| | || ||||| ||||| |||||||| || |||||||||||
Sbjct 971 ATCATCAAACTGAGGAAGCATTTCGTTCTCGGATTGCAGAAGTTTCTCGAGTTTCGTTCA 1030
Query 722 ATGAGACCAACACTGTCAGGTTAAAACCTGCGAGCAAGCTCACTGTCGGGGCTTTGAATA 781
|||||||||| ||||||||||||||||||||||||||| || |||||| |||||||||
Sbjct 1031 ATGAGACCAATACTGTCAGGTTAAAACCTGCGAGCAAGTTCGTTGTCGGATCTTTGAATA 1090
Query 782 GGAAAACATACAAGAAAGCTAGTGGTGTTGTATG-TGAGAATGACGTGTGCACTATTTGT 840
|||||| ||||||||| ||||| | ||| || | |||||||||| |||| |||||||||
Sbjct 1091 GGAAAATATACAAGAAGGCTAGAGATGTCGT-CGTTGAGAATGACATGTGAACTATTTGT 1149
Query 841 TTGGAAGAGTTTGACGATGGAAGAAGTATTGTGACTTTACCGTGTGGGCACGAGTTTGAC 900
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1150 TTGGAAGAGTTTGACGATGGAAGGAGTATTGTGACTTTACCGTGTGGACACGAGTTTGAC 1209
Query 901 GAGGAGTGTGTTTTAGAGTGGTTTGTGAGAAGTCATGTATGTCCATTGTGTCGTCTCGAG 960
||||||||| || ||||||||||||||||| |||| ||||||||||||||||| | |||
Sbjct 1210 GAGGAGTGTATTGAAGAGTGGTTTGTGAGAAATCATATATGTCCATTGTGTCGTTTTGAG 1269
Query 961 TTGCCATGTGAAAGAT 976
|||||| ||||||||
Sbjct 1270 TTGCCACATGAAAGAT 1285
Score = 427 bits (231), Expect = 6e-119
Identities = 354/412 (86%), Gaps = 13/412 (3%)
Strand=Plus/Plus
Query 61 TTCTTGATCGTTCTCGCCATCATGATTTCATCCTTCGCACATGAAATTGAGCACAATCCT 120
|||||||||||||||||||| |||| ||| |||||| |||| ||||| |||||| |||
Sbjct 1 TTCTTGATCGTTCTCGCCATTATGACTTCGTCCTTCACACACGAAATCAAGCACACTCCA 60
Query 121 GTACCTGAAGATGTTGGCATAATCAATATCAGTGTTGCTACGACCAAAATATATCAAAGT 180
|||| ||||||||||||| |||||| |||||||||| ||| |||||||||||||||||
Sbjct 61 ATACCCGAAGATGTTGGCAAAATCAAAATCAGTGTTGATACAACCAAAATATATCAAAG- 119
Query 181 ATCATCAGTAATTATGATCTCTATGATGAACTAACATCAGAATTCTCTTGTATCCCGGTT 240
| ||||| |||| || |||||| | |||| || | ||||||||| ||||||||||||
Sbjct 120 -T-ATCAGCAATTGGGACCTCTATCAAGAAC-AA-A-AAGAATTCTCGTGTATCCCGGTT 174
Query 241 TCTTTACGCGACTGTGTTG-CTGTAG-AGCTTACTGAATTCTTGACGGGATCAGGAAAAA 298
|||||||| || ||| ||| | |||| || |||| |||||||||||| |||||||| |||
Sbjct 175 TCTTTACGTGAATGTATTGAC-GTAGAAG-TTACCGAATTCTTGACGCGATCAGGAGAAA 232
Query 299 TCACTCCCATCGATGCTTACCATGTGTTACTAGAGTTGTTTCGATTCGTCGATGAAATAA 358
||||||| || ||||||||| ||||||||||||| ||||||||||| |||||||| |||
Sbjct 233 TCACTCCTATAGATGCTTACAATGTGTTACTAGACTTGTTTCGATTTATCGATGAAGTAA 292
Query 359 CTTCCTCTGATGATTATACTCCAGGTTGTGCTTTAAGAGTGTTGATGACTCTTACAATCG 418
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 293 CTTCTTCTGATGAATATACTCCAGGTTGTGCTTTAAGAGTGTTGATGACTCTTACTATCG 352
Query 419 CTATTCCTCCTGAACATATTGAAGAAGACGTTCTAGGTTTAGAGGATGAGCA 470
||||||| |||| | |||||||| ||||||||||| ||||||||||||
Sbjct 353 GTATTCCTTATGAAAAAATTGAAGA---CGTTCTAGGTTCAGAGGATGAGCA 401
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36331139901
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5