BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18790.1
Length=810
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472103 jgi|Araly1|472103|fgenesh2_kg.1__2057__AT1G18790.1 1271 0.0
> Ahg472103 jgi|Araly1|472103|fgenesh2_kg.1__2057__AT1G18790.1
Length=778
Score = 1271 bits (688), Expect = 0.0
Identities = 747/776 (96%), Gaps = 2/776 (0%)
Strand=Plus/Plus
Query 1 ATGAAATCGTTTTGCAAGTTGGAGTATGATCAAGTGTTTGGCAAAGAAAATAAT-TCATT 59
||||||||||||||||||||||||||| ||||||| |||||||||||| || || |||||
Sbjct 4 ATGAAATCGTTTTGCAAGTTGGAGTATCATCAAGTATTTGGCAAAGAAGAT-ATATCATT 62
Query 60 CTCATTTCTAAACCACTCATCACTTTACTCTCATCAAAGCGAGTTAGCAAATCCTTTCTT 119
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 63 CTCATTTCTAAACCACTCATCACTTTACTCTAATCAAAGCGAGTTAGCGAATCCTTTCTT 122
Query 120 CGAGTTGGAAGACGAGATGCTTCCTTCTGCTACCTCTAGTAATTGTTTTACTTCTGCCTC 179
||| |||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||
Sbjct 123 CGAATTGGAAGACGAGATTCTTCCTTCTGCAACCTCTAGTAATTACTTTACTTCTGCCTC 182
Query 180 AAGCTTTCTGGCTTTACCTGATCTTGAACCCATCTCCATTGTGTCTCATGAAGCAGATAT 239
||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 183 AAGCTTTCTTGCTTTACCTGATCTTGAACCCATCTCCATCGTATCTCATGAAGCAGATAT 242
Query 240 ACTTAGTGTGTATGGTTCTGCTTCATGGACCGCAGAAGAGACGATGTTCGTTTCTGATTT 299
||||||| |||||||||||||||||||||||| ||||||| ||||| ||| |||||||||
Sbjct 243 ACTTAGTTTGTATGGTTCTGCTTCATGGACCGAAGAAGAGTCGATGCTCGATTCTGATTT 302
Query 300 TGCGAAAAAGAGTGAAACCACAACTACCAAGAAGAGGAGATGCAGAGAAGAATGTTTTTC 359
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 303 TGCGAAAAAGAGTGAAACCACAACTACCAAGAAGAAGAGATGCAGAGAAGAATGTGTTTC 362
Query 360 TAGTTGTTCTGTTTCAAAGACATTGTCGAAGGAAACCATCTCATTGTACTTTTACATGCC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 TAGTTGTTCTGTTTCAAAGACATTGTCGAAGGAAACCATCTCATTGTACTTTTACATGCC 422
Query 420 GATAACTCAAGCGGCTAGAGAGCTTAACATTGGTTTAACTCTTTTGAAGAAGAGATGCCG 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 GATAACTCAAGCGGCTAGAGAGCTTAACATTGGTTTAACTCTTTTGAAGAAGAGATGCCG 482
Query 480 CGAATTGGGTATTAAACGTTGGCCTCATCGTAAGCTCATGAGCCTACAAAAACTCATCAG 539
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 CGAATTGGGTATCAAACGTTGGCCTCATCGTAAGCTCATGAGCCTACAAAAACTCATCAG 542
Query 540 CAATGTCAAGGAGCTAGAGAAGATGGAAGGGGAAGAAAATGAAGATAAGCTAAGAAACGC 599
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 543 CAATGTCAAGGAGATAGAGAAGATGGAAGGGGAAGAAAATGAAGATAGGCTAAGAAATGC 602
Query 600 TTTGGAAAAGCTCGAGAAGGAGAAGAAAACGATTGAGAAGTTACCAGATTTGAAGTTTGA 659
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 603 TTTGGAAAAGCTCGAGAAGGAGAAAAAAACGATTGAGAAGTTACCAGATTTGAAGTTTGA 662
Query 660 GGATAAGACAAAGAGATTGAGACAAGCTTGTTTCAAGGCTAACCATAAGAGGAAGAGAAG 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 GGATAAGACAAAGAGATTGAGACAAGCTTGTTTCAAGGCTAACCATAAGAGGAAGAGAAG 722
Query 720 AAGTGGCATGTCCACGCCCATCACATCATCAtcttcttctgcttctgcttcttctt 775
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 723 AAGTGGCATGTCCACGCCCATCACATCATCATCTTCTTCTGCTTCTTCCTCTTCTT 778
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29926489845
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5