BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18800.1
Length=1257
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920821 jgi|Araly1|920821|scaffold_102102.1 1208 0.0
Ahg476596 jgi|Araly1|476596|fgenesh2_kg.2__1726__AT1G74560.3 590 1e-167
> Ahg920821 jgi|Araly1|920821|scaffold_102102.1
Length=800
Score = 1208 bits (654), Expect = 0.0
Identities = 757/804 (94%), Gaps = 18/804 (2%)
Strand=Plus/Plus
Query 125 GAATCGAAAATGGTGACAGACAAGAGCAAGAAGGCGAAAACCGAAGAAGAAAACGTCGAG 184
|||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 12 GAATTGAAAATGGTGGCAGACAAGAGCAAGAAGGCAAAAACCGAAGAAGAAAACGTCGAG 71
Query 185 CAAATCGAT-GCAGAGCTTGTCCTCTCAATCGAAAAGCTTCAAGAGATCCAAGACGACCT 243
||||||||| | ||||||||||||||| || ||||| || ||||||||||||||||||||
Sbjct 72 CAAATCGATAG-AGAGCTTGTCCTCTCTATTGAAAAACTACAAGAGATCCAAGACGACCT 130
Query 244 CGAGAAGATAAATGAAAAGGCTAGTGATGAAGTGTTGGAAGTGGAGCAGAAATATAATGT 303
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 131 CGAGAAGATAAACGAAAAGGCTAGTGATGAAGTGTTGGAAGTGGAGCAGAAATATAATGT 190
Query 304 GATAAGGAAACCTGTTTATGACAAGCGTAACGAGATCATCAAAACCATCCCTGATTTCTG 363
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 191 GATAAGGAAACCTGTTTATGACAAGCGTAACGAGATTATCAAATCCATCCCTGATTTCTG 250
Query 364 GTTAACTGCTTTCTTGAGTCACCCTGCT-TTAGGTGAACTTTTGACTGAAGAAGACCAAA 422
|||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||
Sbjct 251 GTTAACTGCTTTCTTGAGTCACCCTGCTCTT-GGTGAACTTTTGACAGAAGAAGACCAAA 309
Query 423 AGATTTTCAAATATCTTAGCTCTCTTGATGTTGAGGATGCCAAAGATGTGAAATCTGGAT 482
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 310 AGATTTTCAAATACCTTAGCTCTCTTGATGTTGAGGATGCCAAAGATGTGAAATCTGGAT 369
Query 483 ACTCTATCACTTTTTCCTTCAATCCCAATCCATTTTTTGAAGATGGAAAACTGACAAAGA 542
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 370 ACTCTATCACTTTTTACTTCAATCCCAATCCATTTTTTGAAGATGGAAAACTAACAAAGA 429
Query 543 CTTTTACCTTTCTCGAAGAAGGGACAACCAAAATCACAGCCACGCCTATCAAATGGAAAG 602
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 430 CTTTTACCTTTCTCGAAGAAGGGACAACAAAAATCACAGCCACGCCTATCAAATGGAAAG 489
Query 603 AGGGCAAAGGCCTGGCGAATGGAGTGAATCATGAGAAGAATGGAAACAAACGTGCACTAC 662
||||||||||| || | |||||||||||||| |||||||||||||||||||||||| |||
Sbjct 490 AGGGCAAAGGCTTGTCAAATGGAGTGAATCACGAGAAGAATGGAAACAAACGTGCATTAC 549
Query 663 CTGAAGAGAGCTTCTTTACCTGGTTTAGTGATGCTCAACACAAGGAGGATGTTGAGGATG 722
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 550 CTGAAGAGAGCTTCTTTACCTGGTTTCGTGATGCTCAACACAAGGAGGATGTTGAGGATG 609
Query 723 AGATGCAAGACGAGCAGGTTGCAGATATCATCAAGGAAGATTTGTGGCCCAACCCTCTCA 782
|||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||
Sbjct 610 AGATGCAAGACGAG--G-TTGCGGATATCATCAAGGAAGATTTGTGGCCCAACCCTCTCA 666
Query 783 CCTACTTCAACAATGACGCTGATGAAGAGGACTTTGATGGAGACgatgatggagatgaag 842
|||||||||||||||| |||||||||||||||||||||| | || | ||||||||
Sbjct 667 CCTACTTCAACAATGAGGCTGATGAAGAGGACTTTGATG-A-----TG--G-AGATGAAG 717
Query 843 aggagaaa-gaaggtgactctgatgaagatgatgacgaagaagacgaagTTGGTGAGGAA 901
||| |||| |||||||| |||||||||||||||||||||||||||| || ||||||||||
Sbjct 718 AGG-GAAAAGAAGGTGATTCTGATGAAGATGATGACGAAGAAGACGGAGATGGTGAGGAA 776
Query 902 TGATGGCAGGGATACCCAGAAACC 925
|||||| |||| | ||||||||||
Sbjct 777 TGATGGGAGGGTTCCCCAGAAACC 800
> Ahg476596 jgi|Araly1|476596|fgenesh2_kg.2__1726__AT1G74560.3
Length=1125
Score = 590 bits (319), Expect = 1e-167
Identities = 516/611 (84%), Gaps = 14/611 (2%)
Strand=Plus/Plus
Query 166 CGAAGAAGAAAACGTCGAGCAAATCGATGCAGAGCTTGTCCTCTCAATCGAAAAGCTTCA 225
||||||||||||| | ||||||||||||| | ||||||| |||||||| || ||||||||
Sbjct 199 CGAAGAAGAAAACTTGGAGCAAATCGATGAAAAGCTTGTTCTCTCAATTGAGAAGCTTCA 258
Query 226 AGAGATCCAAGACGACCTCGAGAAGATAAATGAAAAGGCTAGTGATGAAGTGTTGGAAGT 285
||||| ||||| |||||||||||||| ||||||||||| |||||||| || ||||||||
Sbjct 259 GGAGATTCAAGATGACCTCGAGAAGATTAATGAAAAGGCCAGTGATGAGGTCTTGGAAGT 318
Query 286 GGAGCAGAAATATAATGTGATAAGGAAACCTGTTTATGACAAGCGTAACG-AGATCATCA 344
||||||||||||||| |||||| |||||||||| ||||||||||| |||| || | |||
Sbjct 319 GGAGCAGAAATATAACGTGATACGGAAACCTGTCTATGACAAGCGCAACGAAG-TTATCC 377
Query 345 AAACCATCCCTGA-TTTCTGGTTAACTGCTTTCTTGAGTCACCCTGCTTTAGGTGAACTT 403
| | || || || ||| ||| | |||||||| |||||||| ||||| |||||||| ||
Sbjct 378 AGTCGATTCCAGACTTT-TGGATGACTGCTTTTTTGAGTCATCCTGCATTAGGTGATCTC 436
Query 404 TTGACTGAAGAAGACCAAAAGATTTTCAAATATCTT-AGCTCTCTTGATGTTGAGGATGC 462
|||||||||||||||||||||||||| || || ||| | |||||| || || ||||||||
Sbjct 437 TTGACTGAAGAAGACCAAAAGATTTTTAAGTA-CTTGAACTCTCTGGAAGTGGAGGATGC 495
Query 463 CAAAGATGTGAAATCTGGATACTCTATCACTTTTTC-CTTCAATCCCAATCCATTTTTTG 521
||||||||||||||||||||||||||| |||||| | ||||||| |||| || || ||||
Sbjct 496 CAAAGATGTGAAATCTGGATACTCTATAACTTTT-CACTTCAATTCCAACCCGTTCTTTG 554
Query 522 AAGATGGAAAACTGACAAAGACTTTTACCTTTCTCGAAGAAGGGACAACCAAAATCACAG 581
| |||| || || || ||||| |||||||| ||||||||||| ||||| |||||||| |
Sbjct 555 AGGATGCCAAGCTTACTAAGACGTTTACCTTCCTCGAAGAAGGAACAACAAAAATCACTG 614
Query 582 CCACGCCTATCAAATGGAAAGAGGGCAAAGGCCTGGCGAATGGAGTGAATCATGA-GA-A 639
| || |||||||| ||||| |||||||| ||| || | ||||||||||| ||||| || |
Sbjct 615 CAACTCCTATCAAGTGGAAGGAGGGCAAGGGCTTGCCAAATGGAGTGAACCATGATGATA 674
Query 640 -GAATGGAAACAAACGTGCACTACCTGAAGAGAGCTTCTTTACCTGGTTTAGTGATGCTC 698
||| ||||||||||||||| | || || ||||| |||||||| ||||||| ||||||||
Sbjct 675 AGAAAGGAAACAAACGTGCATTGCCAGAGGAGAGTTTCTTTACTTGGTTTACTGATGCTC 734
Query 699 AACACAAGGAGGATGTTGAGGATGAGATGCAAGACGAGCAGGTTGCAGATATCATCAAGG 758
|||| ||||| |||| || ||||||||| || || ||| | |||| ||||| |||||||
Sbjct 735 AACATAAGGAAGATGCTGGGGATGAGATTCATGATGAG--G-TTGCTGATATTATCAAGG 791
Query 759 AAGATTTGTGG 769
||||| |||||
Sbjct 792 AAGATCTGTGG 802
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46967433744
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5