BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18810.1
Length=1435
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920822 jgi|Araly1|920822|scaffold_102103.1 1452 0.0
> Ahg920822 jgi|Araly1|920822|scaffold_102103.1
Length=1156
Score = 1452 bits (786), Expect = 0.0
Identities = 861/897 (96%), Gaps = 6/897 (1%)
Strand=Plus/Plus
Query 446 tcctcatccCCAGTTGACGAAAACGACGTCGTCAAGATCAAAAACAAGCCGACATGGAAC 505
|||||||||||| |||||||||||||||||||| ||||||| |||||||||||| |||||
Sbjct 266 TCCTCATCCCCAATTGACGAAAACGACGTCGTCTAGATCAAGAACAAGCCGACACGGAAC 325
Query 506 GCCAAGTGTAAGATCCGAGTCAAGTTGCAACAGTCAAACCTTTCTCATGAGGATTAACAA 565
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 326 GCCAAGTGTAAGATCCGAGTCAAGTTACAACAGTCAAACCTTTCTCATGAGGATTAAC-A 384
Query 566 CCACAATGAAAATAAGCAACGGAAAATGAACGATACGAGCATCTCTTTTGGTGGGTTTAG 625
||||||| |||||||||||||||| |||||| || ||| ||||||||||| |||||||
Sbjct 385 --ACAATGAGAATAAGCAACGGAAAACGAACGAGACAAGCCTCTCTTTTGGTCGGTTTAG 442
Query 626 ATGTTACGGTCCCTGCTCTGGGGTCAAAACCGTCCATACCGACCCAAAAAACTCCTGTAA 685
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 443 ATGTTACGGTCCCTGCTCTGGGGTCAAAACCGTCCATACCGACCCAAAAATCTCCTGTAA 502
Query 686 AAGTAGAAATTCCGATCGGGATTTTGTTGCTTACGACGCAAGAAAGCACAACGACAAACC 745
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 503 AAGTAGAAATTCCGATCGGGATTTCGTTGCTTACGACGCAAGAAAGCACAACGACAAGCC 562
Query 746 AAGACTCCATTTTGAAGCCAAGAAAGCGGATTTTCATGCGCAAGAGAAGATTTCATTACC 805
|||||||||||||||||||||||||| ||||| | ||| || ||||||||| |||||||
Sbjct 563 AAGACTCCATTTTGAAGCCAAGAAAGTGGATTATAATGAGCCAGAGAAGATCCCATTACC 622
Query 806 TATTCAAAGGTCCGATATCGCCATGAACCTCGAGAGAAAGCTCTCTCTGCTTACATGGGA 865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 623 TATTCAAAGGTCCGATATCGCCATGAACCTCGAGAGAAAGCTCTCTCTGCTTACATGGGA 682
Query 866 CGCAATACCAAACCAACTCTCTACCAAGAACAACAATCACAACAATAATGGTAATAACTC 925
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 683 CGCAATACCAAACCAACTCTCTACCAAGAACAACAATCACAACAAT---GGTAATAACTC 739
Query 926 TTCAATGAGTAGCAACACGCAAGAGGAAGAGACAGCAAGTGTAGCAAGTTCTGATTTGTT 985
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 740 TTCAATGAGCAGCAACACGCAAGAGGAAGAGACAGCAAGTGTAGCGAGTTCTGATTTGTT 799
Query 986 CGAGATTGAGAACATAACGAGCAGTGTCTATGAGCCGAGTGAGGCCAGCATTGGATGGAG 1045
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 800 CGAGATTGAGAACATAACGAGCAGTGTCTATGAGCCAAGTGAGGCCAGCATTGGATGGAG 859
Query 1046 TGTGGTAACGGGAAGTATGGCAGATCAATCGGTGATTTCGGATTTCGATATGATGAAGAG 1105
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 860 TGTGGTAACGGGAAGTATGGCAGATCAATCGGTGATTTCGGATTTCGATATGACGAAGAG 919
Query 1106 GGTCACGAGAAATGGTCCGGTGGTTAAAACCAAACCGGTGATTGGTGAGAAAGTCCGGTC 1165
||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 920 GGTCACGAGAAGTGGTCCGGCGGTTAGAACCAAACCGGTGATTGGTGAGAAAGTCCGGTC 979
Query 1166 GGCTGGGTTTTTGTCGGGTTGTAAGAGTCACAAAGCTGTCTCGGTTGTTGATAGTTCTAG 1225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 980 GGCTGGGTTTTTGTCGGGTTGTAAGAGTCACAAAGCTGTCTCGGTTGTTGATAGTTCTAG 1039
Query 1226 AAAAGTGAAAGAAACAGCCAAGGTTGATCATCACGAGATGTCTCATCAGAAGAAGTTTAA 1285
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1040 AAAAGCGAAAGAAACAGCCAAGGTTGATCATCACGAGATGTCTCATCAGAAGAAGTTTAA 1099
Query 1286 AACTGAGATTAGGATTCAAGACTTGAGCTTTCTTTAATAAACAATGTTTGTGTATGT 1342
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1100 AACTGAGATTAGGATTCAAGACTTGAGCTTTCTTTAATAAACAATGTTTGTGTGTGT 1156
Score = 401 bits (217), Expect = 6e-111
Identities = 254/271 (94%), Gaps = 5/271 (2%)
Strand=Plus/Plus
Query 140 TATATACACATACAA-AGAGATGGATGCTGAAAAGAAGAGTGCCCATTTTCGCCAAATCT 198
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 TATATACACATACAATAGAGATGGATGCTGAAAAGAAGAGTGCTCATTTTCGCCAAATCT 60
Query 199 CATCTTATAAACCACAATTACTTGTCCTCTCCTCAATCCAAGAA-AACCCTTCTTCAAAA 257
|| |||||||||||||| |||||||||||||||| ||||||||| || ||||||||||||
Sbjct 61 CAACTTATAAACCACAACTACTTGTCCTCTCCTCGATCCAAGAACAA-CCTTCTTCAAAA 119
Query 258 ATCTCAGAAAAAGCCAATATCAAAGCTGACAATGACGCCGAGATTGGAGTTTTCGGAGCA 317
|||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 120 ATCTCAGACAAACCCAATATCAAAGCTGATAATGACGCCGAGATTGGAGTTTTCGGAGCA 179
Query 318 GAAAAGTACTTCAGCATGAAGCTAGATCATGTTGATTCCACGGCGGATATCACCAAGCAA 377
||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 180 GAAAAATACTTCAGCATGAAGCTAGATCCTGTTGATTCCTCGGCGGATATCACCAAGCAA 239
Query 378 CATGAAAAGGAAAACACACATG-atcatcct 407
|| |||||||||||||||| || ||| ||||
Sbjct 240 CACGAAAAGGAAAACACAC-TGGATCGTCCT 269
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53669155205
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5