BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18830.1
Length=2910
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472106 jgi|Araly1|472106|fgenesh2_kg.1__2060__AT1G18830.1 1716 0.0
Ahg939446 jgi|Araly1|939446|scaffold_503637.1 712 0.0
> Ahg472106 jgi|Araly1|472106|fgenesh2_kg.1__2060__AT1G18830.1
Length=2682
Score = 1716 bits (929), Expect = 0.0
Identities = 1248/1392 (90%), Gaps = 61/1392 (4%)
Strand=Plus/Plus
Query 1282 GAGAAGGAAACATGGGGACTGCTGAAAATTATGCTTGAAGAAGATGGGAACGCAAAGACG 1341
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 1087 GAGAAGGAAACATGGGGATTGCTGAAAATCATGCTTGAAGAAGATGGGAACGCAAAGACG 1146
Query 1342 AAGTTGCGTAGCCATCTTGGCTTTAGTTTACCATCTGAGGAAAATGATCAAACTGCTAAT 1401
|||||||||| ||||||||||||||||||||| ||||| ||||| |||||||||| |||
Sbjct 1147 AAGTTGCGTACCCATCTTGGCTTTAGTTTACCTTCTGATGAAAAGGATCAAACTGTTAAC 1206
Query 1402 GAGCCTCATGCTACATGTTCTTCTACAAACGTGGAAGAAACTCAGAAAGTGCCAGAACCA 1461
||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||
Sbjct 1207 GAGCCTCATGCTACATGTTCTTCTACAAACGAGGAAGAAACTAAGAAAATGCCAGAACC- 1265
Query 1462 GAAGGAGAAGAAGAAGAGAGCTCTGATCCAACATTTGATGATGCCATCCAACGTTCATTG 1521
||||| | |||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 1266 -----AGAAG--G-AGAGAGCTCTTATCCAACATTTGATGATGCTATCCAACGTTCATTG 1317
Query 1522 ATTGTGGGAGATTACAAGGAAGCAGTGGCTCAGTGTTTTTCTGCAAATAAGATGGCTGAT 1581
||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 1318 ATTGTGGGAGATTACAAGGGAGCAGTGGCTCAGTGTTTATCTGCAAATAAGATGGCTGAC 1377
Query 1582 GCTTTAGTTATTGCTCATGTTGGTGGTACAGAATTGTGGGAGAGTACTCGTGATA-A-AT 1639
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||| | ||
Sbjct 1378 GCTTTAGTGATTGCTCATGTTGGTGGTACAGAATTGTGGGAGAGTACTCGCGATATATAT 1437
Query 1640 ATATA--AGGATGAGCAATG-------C-----------TC--C-TTACATGA-A-G--- 1671
||||| ||||||||||||| | || | |||| ||| | |
Sbjct 1438 ATATATGAGGATGAGCAATGCACCTTACATGAAGGTATATCAACTTTACTTGATATGTTT 1497
Query 1672 GTTGTTTCTGCAATGATGAACAATGATCTAATGACCTACCTTCATACAAGACAACCTAAA 1731
||||| ||||||||||||||||||||| ||||||||| |||||||||||| |||||||
Sbjct 1498 GTTGTCTCTGCAATGATGAACAATGATTTAATGACCTTTGTTCATACAAGACCACCTAAA 1557
Query 1732 TCCTGGAAAGAAACTCTTGCTCTCATCTGCACTTTTGCAGAAGGAGATGAATGGATAAGC 1791
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 TCCTGGAAAGAAACACTTGCTCTCATCTGCACTTTTGCAGAAGGAGATGAATGGATAAGC 1617
Query 1792 CTCTGCGATGCTCTTGCCTCAAATTTGATGGCTGCTGGTTTTACTTTGGCTGCAACTCTG 1851
||||| ||||||||| ||||||||||||||| | |||||||||| |||||||||||||||
Sbjct 1618 CTCTGTGATGCTCTTACCTCAAATTTGATGGATCCTGGTTTTACGTTGGCTGCAACTCTG 1677
Query 1852 TGTTACATTTGCGCAGGCAATGTCGACAAAACAGTAGACATTTGGTCAATGAGCCTTGAA 1911
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1678 TGTTACATTTGCTCAGGCAATGTCGACAAAACAGTAGACATTTGGTCAAGGAGCCTTGAA 1737
Query 1912 AAACAAAGTGCTGGGAAATCTTATGCTGAGTGTGTTCAAGATCTTATGGAGAAAACTCTT 1971
||| |||||| ||||||||||||||||||| ||||||||| || | | ||||||
Sbjct 1738 AAAGAAAGTGATGGGAAATCTTATGCTGAGCGTGTTCAAG-----AT-GCG---ACTCTT 1788
Query 1972 GTCCTTGCTTTGACAACTTGCAACAAGAGAGTCAGTGCGTCTCTACGTAAACTCTTTGAA 2031
|||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1789 GTCCTTGCTTTGGTAACTGGCAACAAGAGATTCAGTGCGTCTCTACGTAAACTCTTTGAG 1848
Query 2032 AGTTATGCTGAGATATTGGCTAGTCAAGGACTTATTGCAACAGCTATGAAGTTCTTAAAA 2091
|||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||
Sbjct 1849 AGTTATGCTGAGATATTGGCCAGTCAAGGACTTCTTGCAACCGCTATGAAGTTCTTAAAA 1908
Query 2092 CTTCTGGAGTCTGGTGATTTCTCACCTGAACTTTCAATCTTGCGTGATCGGATTTCTCTG 2151
|||| |||||||| ||||||||||| |||||||||||||||| | ||| |||| |||||
Sbjct 1909 TTTCTTGAGTCTGGCGATTTCTCACCCGAACTTTCAATCTTGCATAATCAGATTGCTCTG 1968
Query 2152 TATGCAGAACCTGAAGCTGCTAACACTTCTGCTTCA-ACAAACACTCAGCCTAAAATTTC 2210
||||| |||||||||||||||||||||||||||||| | |||||||||| ||||||| ||
Sbjct 1969 TATGCGGAACCTGAAGCTGCTAACACTTCTGCTTCAGA-AAACACTCAGTCTAAAATCTC 2027
Query 2211 CAAT-CCATATCAAGAGAAATCTTTTAC-TCCAGCTCCATTAAGCAATGCTCAGCCATCA 2268
| || ||||||||| |||||| |||| | |||||||||||||||||||||||||||||||
Sbjct 2028 C-ATGCCATATCAAAAGAAATATTTT-CTTCCAGCTCCATTAAGCAATGCTCAGCCATCA 2085
Query 2269 AGAAGTATTACtttttttCCTTTGAATCCTCCTCGAGAACTAAAGAACGCGGACCAATAT 2328
|| | | ||||||| ||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 2086 AG-A--ACTACTTTTGTTCCTTTGAATCCTCCTAGAGAACTAAAGAACGCGGACCAGTAT 2142
Query 2329 CAGCAACCAACCATGGATTATCATTCATTTAATCGATCCGCTGGCCCAGCTTACAATGC- 2387
||||||||||||||||||| | |||| |||||||||||||||| |||||||||||||||
Sbjct 2143 CAGCAACCAACCATGGATTCTTATTCGTTTAATCGATCCGCTGACCCAGCTTACAATGCA 2202
Query 2388 TCCACCCGGTCCTGGTTCATATCGATCCA-TCCATTCACAAGTTGGTCCATATATAAACT 2446
| ||||||||||||| ||| ||||||||| ||| ||||||||||||||||||||| ||||
Sbjct 2203 T-CACCCGGTCCTGGCTCACATCGATCCATTCC-TTCACAAGTTGGTCCATATATTAACT 2260
Query 2447 CCAAGATTCCCCAAACTGTTGCTCCTCCAGTCCGACCTATGACTCCAACACACCAGGTAG 2506
||||||||||||||||||||||||| ||| | ||| ||||| |||||||||||||||||
Sbjct 2261 CCAAGATTCCCCAAACTGTTGCTCCACCAATGGGACATATGAATCCAACACACCAGGTAG 2320
Query 2507 CGGTGCAACCAGAACCTGTAGCTCCACCACCAACTGTTCAGACTGCAGATACTTCCAATG 2566
| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2321 CAATGCAACCAGCACCTGTAGCTCCACCACCAACTGTTCAGACCGCAGATACTTCCAATG 2380
Query 2567 TACCAGCCCACCAGAAACCTATTGTGGCTTCATTGACAAGGCTATTTAAAGAGACATTTG 2626
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 2381 TACCAGCCCACCAGAAACCTATTGTGTCTACATTGACAAGGCTATTTAAAGAGACATTTG 2440
Query 2627 AACCATTAAGAG 2638
||| |||| |||
Sbjct 2441 AACTATTAGGAG 2452
Score = 987 bits (534), Expect = 0.0
Identities = 611/649 (94%), Gaps = 2/649 (0%)
Strand=Plus/Plus
Query 351 TGTTCGTGGTCTTGAATTTAATGTTAAGTCTCCAAATCAACTTGCTTCTGGGGCTGATGA 410
|||||||||||||||||||||||| ||||| |||||| |||||||||||||| |||||||
Sbjct 219 TGTTCGTGGTCTTGAATTTAATGTCAAGTCCCCAAATAAACTTGCTTCTGGGACTGATGA 278
Query 411 TGGTACAGTTTGTATTTGGGATTTAGCAAATCCTTCAAAGCCTTCTCATTATCTAAAGGG 470
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 279 TGGTACAGTTTGTATTTGGGATTTAACAAATCCTTCAAAGCCTTGTCATTATCTAAAGGG 338
Query 471 TACTGGTTCTTATATGCAAAGTGAAATCTCTTCTTTATCATGGAATAAAGGGTTTCAACA 530
|||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||
Sbjct 339 TACTGGTTCTTATATGCAAAGTGAAATCTCTTCTATATCATGGAATAGAGAGTTTCAACA 398
Query 531 TGTTTTAGCATCTACCTCACACAACGGGACTACAGTGATATGGGATGTGAATAACGAGAA 590
||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||
Sbjct 399 TGTTTTAGCATCTACCTCATACAAAGGGACTACTGTGATATGGGATGTGAATAACGAGAA 458
Query 591 GATTATAACAGACTTGAAAACTACCGTTAGGTGCTCAGTTTTGCAATGGGATCCTGATCA 650
| ||||||||||||| |||| |||||||||||||||| |||||||||||||||||||| |
Sbjct 459 GGTTATAACAGACTTCAAAAATACCGTTAGGTGCTCAATTTTGCAATGGGATCCTGATAA 518
Query 651 TTTTAATCAGATTTTGGTTGCTTCAGATGAAGATAGTTCACCGAATGTGAAGCTTTTGGA 710
|| ||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 519 TTATAATCAGATAATGGTTGCATCAGATGAAGATAGTTCACCAAATGTGAAGCTTTTGGA 578
Query 711 CATAAGGTATCTACAATCACCTGTTCGCACATTTGTTGGTCACCAAAGAGGTGTGATTGC 770
|||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||
Sbjct 579 CATAAGGTATCTACAATCACCTGTTCGCACATTTATTGGCCACCAAAAAGGTGTGATTGC 638
Query 771 AATGGAGTGGTGTCCAAGTGACAGCTTGTATCTACTTACCTGTGG-GAAAGACAACCGAA 829
|||||||||||||||||||||||| |||||| |||||||||| || |||||||| |||||
Sbjct 639 AATGGAGTGGTGTCCAAGTGACAGTTTGTATTTACTTACCTG-GGCGAAAGACAGCCGAA 697
Query 830 CTATTTGTTGGAACACAAAGACAGGAAAGATTGTGGCTGAGTTACCTACTGGTCAAAACT 889
||||||| ||||||||||||||| ||||||||| |||||||||||||||||| ||||| |
Sbjct 698 CTATTTGCTGGAACACAAAGACAAGAAAGATTGCGGCTGAGTTACCTACTGGCCAAAATT 757
Query 890 GGAATTTTGATGTTCATTGGTATCCAAAGATGCCTGGAGTTATATCAGCATCTTCAGTTG 949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 758 GGAATTTTGATGTTCATTGGTATCCAAAGATGCCTGGAGTTATATCAGCATCTTCAGTTG 817
Query 950 ATGGGAAAATTGGCATCTATAACCTTGAGGGTTGTAGCAGCTATGGTAC 998
||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 818 ATGGGAAAATTAACATCTATAACCTTGAGGGTTGCAGCAGCTATGGTAC 866
Score = 257 bits (139), Expect = 3e-67
Identities = 205/236 (87%), Gaps = 8/236 (3%)
Strand=Plus/Plus
Query 2676 AGAAGATAATTGCTCAAGAAAGCTAGGAGCTCTGTTTTCAAAACTAAATAATGGGGACAT 2735
||||||||| |||||||||||||||||||||||||| |||||||||| ||| |||||
Sbjct 2454 AGAAGATAA---CTCAAGAAAGCTAGGAGCTCTGTTTTTGAAACTAAATAGTGGAGACAT 2510
Query 2736 CTCGAAGAACGCTGCTGAAAAACTCACTCAGCTCTGTCAAGCTCTGGACAAACGTGATTT 2795
||| ||||||||||||| |||||||||||||||||||||||||||| ||||| | || |
Sbjct 2511 CTCAAAGAACGCTGCTGGAAAACTCACTCAGCTCTGTCAAGCTCTGAACAAAAATAATCT 2570
Query 2796 TGGTGCAGCGTTAAAAATACAGG-GGCTTATGACAAGCACCGAATGGGATGAGTGCAGTT 2854
||||||||| ||| ||||||||| |||| ||||||| |||||||||| ||||||||||||
Sbjct 2571 TGGTGCAGCTTTACAAATACAGGTGGCT-ATGACAAACACCGAATGGTATGAGTGCAGTT 2629
Query 2855 CTTGGCTTCCAACACTTAAGAAAATGATCGTCACGGGAAGGCAAAATGTGCGGTGA 2910
||||||||||||||| ||| |||| ||| | ||||| ||||||||| | ||||
Sbjct 2630 TTTGGCTTCCAACACTAAAGCAAATCATCA--A-GGGAAAGCAAAATGTTCAGTGA 2682
Score = 209 bits (113), Expect = 8e-53
Identities = 132/141 (94%), Gaps = 1/141 (1%)
Strand=Plus/Plus
Query 1101 AAA-GCTTATTTCGTTTAACAAAAATCTTCCTGAGGCATCTGAGGTCTTTCTGCATAGCT 1159
||| |||||||||||| ||||||||||| ||||||||||||||||| |||||||||| |
Sbjct 947 AAATGCTTATTTCGTTCAACAAAAATCTCCCTGAGGCATCTGAGGTTTTTCTGCATACCC 1006
Query 1160 TGGCCACAGAAAAAAGTTTGGTGAATCGAATTTCTAAATTTGAAGCTGCATTAGAAAATG 1219
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1007 TGGCCACAGAACAAAGTTTGGTGAATCGAATTTCTAAATTTGAAGCTGCATTAGAAAATG 1066
Query 1220 GAGAGAAGACTTCCCTTAGGG 1240
||||||||||||| ||||||
Sbjct 1067 GAGAGAAGACTTCAATTAGGG 1087
Score = 156 bits (84), Expect = 1e-36
Identities = 111/124 (90%), Gaps = 1/124 (1%)
Strand=Plus/Plus
Query 171 AGTAGGTCAATGCCAAAGTTCCGAGCGGTTTAATCGACTCGCTTGGGGAAGTTATGGCTC 230
|||| |||| ||| |||| || |||||||||||||||||||||| |||||||||||| ||
Sbjct 87 AGTA-GTCATTGCAAAAGCTCTGAGCGGTTTAATCGACTCGCTTAGGGAAGTTATGGATC 145
Query 231 TGGATCCGATGGTCTCATAGCCGGTGGTCTAGTTGACGGGAACATCGGTTTATGGAATCC 290
|||||| ||||||| ||| |||||||| || ||||||||||||||||||||||||||||
Sbjct 146 TGGATCTGATGGTCACATCGCCGGTGGCCTCTTTGACGGGAACATCGGTTTATGGAATCC 205
Query 291 AATT 294
||||
Sbjct 206 AATT 209
> Ahg939446 jgi|Araly1|939446|scaffold_503637.1
Length=3358
Score = 712 bits (385), Expect = 0.0
Identities = 632/751 (84%), Gaps = 17/751 (2%)
Strand=Plus/Plus
Query 1463 AAGGAGAAGAAGAAGAGAGCTCTGATCCAACATTTGATGATGCCATCCAACGTTCATTGA 1522
||| |||||| ||||| || ||||| ||| ||||||| |||||||||| ||| | ||||
Sbjct 1680 AAGAAGAAGAGGAAGAAAGTTCTGACCCAGTATTTGATAATGCCATCCAGCGTGCTTTGA 1739
Query 1523 TTGTGGGAGATTACAAGGAAGCAGTGGCTCAGTGTTTTTCTGCAAATAAGATGGCTGATG 1582
|||| |||||||||||||| || |||| ||||||| | ||||||||||||||||| ||||
Sbjct 1740 TTGTTGGAGATTACAAGGAGGCGGTGGATCAGTGTATATCTGCAAATAAGATGGCCGATG 1799
Query 1583 CTTTAGTTATTGCTCATGTTGGTGGTACAGAATTGTGGGAGAGTACTCGTGATAAATATA 1642
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1800 CTTTAGTTATTGCTCATGTTGGTGGTACAGCGTTGTGGGAGAGTACTCGTGAGAAATATT 1859
Query 1643 T-AAGGATGAGCAATGCTCCTTACATGAAGGTTGTTTCTGCAATGATGAACAATGATCTA 1701
| ||| | ||||| ||| ||||||||||||||||||||||| ||| |||||||||||||
Sbjct 1860 TGAAG-ACGAGCAGTGCGCCTTACATGAAGGTTGTTTCTGCGATGGTGAACAATGATCTC 1918
Query 1702 ATGA-CCT-ACCTTCATACAAGA-CAACCTAAATCCTGGAAAGAAACTCTTGCTCTCATC 1758
| || ||| | || ||||||| || | ||| | ||||||||| |||||||||||| ||
Sbjct 1919 AGGAGCCTTATCT--ATACAAGGTCA-CATAAGTTCTGGAAAGAGACTCTTGCTCTCCTC 1975
Query 1759 TGCACTTTTGCAGAAGGAGATGAATGGATAAGCCTCTGCGATGCTCTTGCCTCAAATTTG 1818
|| ||||||||| ||||||| |||||| | ||| |||||||| |||||||| || |||
Sbjct 1976 TGTACTTTTGCACAAGGAGAACAATGGACCACCCTGTGCGATGCCCTTGCCTCGAAGTTG 2035
Query 1819 ATGGCTGCTGGTTTTACTTTGGCTGCAACTCTGTGTTACATTTGCGCAGGCAATGTCGAC 1878
|||||||||||| |||||||||||| ||| || |||||||||||||||||||| |||
Sbjct 2036 ATGGCTGCTGGTAACACTTTGGCTGCAGTTCTCTGCTACATTTGCGCAGGCAATGTTGAC 2095
Query 1879 AAAACAGTAGACATTTGGTCAATGAGCCTTGAAAAACAAAGTGCTGGGAA-ATCTTATGC 1937
| ||||||||| |||||||| | |||||||| ||| | | | ||| || |||||||||
Sbjct 2096 AGAACAGTAGAAATTTGGTCGAGGAGCCTTGCAAATGAGCGGGATGG-AAGATCTTATGC 2154
Query 1938 TGAG-TGTGTTCAAGATCTTATGGAGAAAACTCTTGTCCTTGCTTTGACAACTTGCAACA 1996
|||| | | ||||||||||||||||||| |||||||||||||||||| ||||| ||||||
Sbjct 2155 TGAGCT-TCTTCAAGATCTTATGGAGAAGACTCTTGTCCTTGCTTTGGCAACTGGCAACA 2213
Query 1997 AGAGAGT-CAGTGCGTCTCTACGTAAACTCTTTGAAAGTTATGCTGAGATATTGGCTAGT 2055
| | ||| ||| || ||||| ||||||||||||| ||||||||||||||| |||| ||
Sbjct 2214 AAA-AGTTCAGCGCATCTCTGTGTAAACTCTTTGAGAGTTATGCTGAGATACTGGCCAGC 2272
Query 2056 CAAGGACTTATTGCAACAGCTATGAAGTTCTTAAAACTTCTGGAGTCTGGTGATTTCTCA 2115
||||| ||| || |||| || ||||||| ||| ||| ||||||| ||||||| || ||
Sbjct 2273 CAAGGGCTTCTTACAACGGCAATGAAGTACTTGAAAGTTCTGGATTCTGGTGGCTTGTCG 2332
Query 2116 CCTGAACTTTCAATCTTGCGTGATCGGATTTCTCTGTATGCAGAACCTGAAGCTGCTAAC 2175
|||||||||||||| || |||||||| |||||||||| |||||||||||| | |||||
Sbjct 2333 CCTGAACTTTCAATATTACGTGATCGTATTTCTCTGTCTGCAGAACCTGA-GA--CTAAC 2389
Query 2176 ACTTCTGCTTCAACAAACACTCAGCCTAAAA 2206
||| | |||||| ||||||||||||| |||
Sbjct 2390 ACTGCAGCTTCAGGAAACACTCAGCCTCAAA 2420
Score = 704 bits (381), Expect = 0.0
Identities = 1125/1467 (77%), Gaps = 119/1467 (8%)
Strand=Plus/Plus
Query 1 ATGGATTGCATAAAGAGTATTGGTAGATCCGCTTTCGTTGCCATCGCGCCGGAATCTCCG 60
|||| |||||| ||| | | || |||||||| | ||||||| | || || || ||||
Sbjct 23 ATGGCTTGCATCAAGGGGGTGGGCAGATCCGCCTCCGTTGCCCTGGCTCCCGACGCTCC- 81
Query 61 TT-CATAGCAGCCGGAACAATGGCCGGAGCAGTAGATCTTTCGTTTAGTTCATCCGCCAA 119
|| ||| || |||||||| ||||||||||| || ||||| || ||||| || ||||||||
Sbjct 82 TTACATGGCCGCCGGAACCATGGCCGGAGCCGTCGATCTCTCCTTTAGCTCTTCCGCCAA 141
Query 120 TCTCGAGATCTTTGAA-CTCGATTTTCAGTCCAACGATCGTGAGCTAAAACTAGTAGGTC 178
||||||||||||| || ||||| |||||||| ||||||| || | || || ||
Sbjct 142 TCTCGAGATCTTT-AAGCTCGACTTTCAGTCTGACGATCGCGATTTGCCTCTCGTTGGGG 200
Query 179 AATGCCAAAGTTCCGAGCGGTTTAATCGACTCGCTTGGGGAAGTTATGGCTCTGGATCC- 237
|| ||| || |||||||| || || ||||||| |||||||| | || |||||||||
Sbjct 201 AAAGCCCCAGCTCCGAGCGCTTCCATAGACTCGCCTGGGGAAGAAACGGATCTGGATCCG 260
Query 238 --G-A-------T-GGTCTCATAGCCGGTGGTCTAGTTGACGGGAACATCGGTTTATGGA 286
| | | ||||| || ||||| || || || ||||| || || | | ||||||
Sbjct 261 AGGAATTCTCCCTCGGTCTTATTGCCGGCGGCCTTGTCGACGGAAATATAGATCTATGGA 320
Query 287 AT-C-C---AATT-A---GTTCTGAGTCTGGTGAAATTGCGCACGTTAGAGAT-TTGTCA 336
|| | | || | |||| || | |||||| ||| | |||| | || || |||
Sbjct 321 ATCCTCTTTCTTTGATCGGTTCCCAGCCCAGTGAAAATGCACTCGTTGGCCATCTT-TCA 379
Query 337 AAACACAAAGGACCTGTTCGTGGTCTTGAATTTAATG-T-T-AAGTCTCCAAATCAACTT 393
|||||||| ||||||||||||||||| ||||||| | | || | ||||||| ||||
Sbjct 380 GTTCACAAAGGCCCTGTTCGTGGTCTTGAGTTTAATGCTATCAA--C-CCAAATCTACTT 436
Query 394 GCTTCTGGGGCTGATGATGGT-ACAGTTTGTATTTGGGATTTAGCAAATCCTTCAAAGCC 452
||||||||||||||||||||| | | |||| |||||||| ||| ||| |||||| ||||
Sbjct 437 GCTTCTGGGGCTGATGATGGTGA-AATTTGCATTTGGGACTTATTAAAGCCTTCAGAGCC 495
Query 453 TTCTCA--TT--A--TCTAAAGGGTACTGGTTCTTATATGCAAAGTGAAATCT-CTTCTT 505
|||||| || | ||| ||||||| ||||||| || |||| ||||||||| ||| |
Sbjct 496 TTCTCATTTTCCACTTCTCAAGGGTAGTGGTTCTGCTACGCAAGGTGAAATCTCCTT-TA 554
Query 506 TATCATGGAAT--AAAGGGTTTCAACATG-TTTTAGCATCTACCTCACACAACGGGACTA 562
|||| |||||| ||| | ||||||| | | ||||| ||||||||| |||| |||||||
Sbjct 555 TATCGTGGAATCGAAA-AG-TTCAACA-GATATTAGCTTCTACCTCATACAATGGGACTA 611
Query 563 CAGTGATATGGGA-TGTGAATAACG-AGAAGATTATAA-CAGAC-TTGAAAACTACCGTT 618
| || |||||||| | ||| || | ||||| ||||| | || ||| | | | | |||
Sbjct 612 CTGTAATATGGGACT-TGAGGAA-GCAGAAGCCTATAATTA-ACTTTGCAGA-TTCAGTT 667
Query 619 --A----GGTGCTCAGTTTTGCAATGGGATCCTGATCATT-TTAATCAGATTTTGGTTGC 671
| ||||||| ||||| || ||| | ||| | |||| || |||||| |||||||
Sbjct 668 CGACGCCGGTGCTCTGTTTTACAGTGGAACCCT-AACATTACTACTCAGATAATGGTTGC 726
Query 672 TTCAGATGAAGATAGTTCACCGAATGTGAAGCTTTTGGACATAAGGTATCTACAATCACC 731
|||||||| || |||||||| | | ||||||| | |||||| ||| || || |||||
Sbjct 727 ATCAGATGACGACAGTTCACCTACTTTGAAGCTCTGGGACATGAGGAATATATTGTCACC 786
Query 732 TGTTCGCACA-TTTGTTGGTCACCAAAGAGGTGTGATTGCAATGGAGTGGTGTCCAAGTG 790
||| ||| | ||| ||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 787 TGTGCGC-GAGTTTACTGGACACCAAAGAGGGGTGATTGCAATGGAGTGGTGTCCAAGTG 845
Query 791 ACAGCTTGTATCTACTTACCTGTGGGAAAGACAACCGAACTATTTGTTGGAACACAAAGA 850
|||||| ||||| ||||| |||| || ||||||||||| ||||| ||| ||||||| |
Sbjct 846 ACAGCTCATATCTTCTTACTTGTGCTAAGGACAACCGAACGATTTGCTGGGACACAAATA 905
Query 851 CAGGAAAGATTGTGGCTGAGTTACCTACTGGTCAA-AACTGGAATTTTGATGTTCATTGG 909
||| | |||||||||||||||||||| |||| ||| || |||||||||||||||||||||
Sbjct 906 CAGCAGAGATTGTGGCTGAGTTACCTGCTGG-CAACAATTGGAATTTTGATGTTCATTGG 964
Query 910 TATCCAAAGATGCCTGGAGTTATATCAGCATCTTCAGTTGATGGGAAAATTGGCATCTAT 969
|| |||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 965 TACCCAAAGATACCTGGAGTTATATCAGCATCATCATTTGATGGGAAAATTGGCATCTAC 1024
Query 970 AACCTTGAGGGTTGTAG-CAGCTATGGTACCGA-GAACCAACAGCACTTCTTATTCCATC 1027
||| | |||||||| || | | |||||| | || || || | | || || | | |
Sbjct 1025 AACATCGAGGGTTGCAGTC-GATATGGTGCTGAAGAG--AATA--A-TT-TTGGT--A-C 1074
Query 1028 TTCTCGATGCAGATCCTTTAACAGCACCAAAATGGTGGAAGCGCCCGGCTGGTGCATCTT 1087
| | | |||||||| |||||||||||||| |||||||||| |||||||||||
Sbjct 1075 T----G---C---TCCTTTAAGAGCACCAAAATGGTATAAGCGCCCGGTTGGTGCATCTT 1124
Query 1088 TTGGATTTGGAGGAAAGCTTATTTCGTTT-A-ACAA----------AAA---T-CTTCCT 1131
|||||||||| ||||||||| | |||| | | |||| ||| | ||||
Sbjct 1125 TTGGATTTGGGGGAAAGCTTGTATCGTGTCACACAAGGGCCCCTGCAAAGGGTACTTCGA 1184
Query 1132 G-AGGC-ATCTGAGGTCTTTCTGCATAGCTTGGCCACAGAAAAAAGTTTGGTGAATCGAA 1189
| | | ||| ||||| ||| |||| ||| ||| |||||| | |||||||||| |||||
Sbjct 1185 GCATTCTATCCGAGGTTTTTTTGCACAGCCTGGTAACAGAACAGAGTTTGGTGAGTCGAA 1244
Query 1190 TTTCTAAATTTGAAGCTGCATTAGAAAATGGAGAGAAGACTTCCCTTAGGGGTTTATGCG 1249
||| |||||||||||||| ||||||||||||| | |||||| || |||||||| ||||
Sbjct 1245 CTTCGGAATTTGAAGCTGCAATAGAAAATGGAGATATGACTTCTCTAAGGGGTTTGTGCG 1304
Query 1250 AGAAGAAAACAGAAGAGGCCGAATCTGAGGAAGAGAAGGAAACATGGGGACTG-CTGAAA 1308
|||||||| | |||||| | ||||| || || ||||| || |||||||| || ||||||
Sbjct 1305 AGAAGAAATCGGAAGAGACTGAATCCGAAGAGGAGAAAGAGACATGGGG-CTTACTGAAA 1363
Query 1309 ATTATGCTT-GAAGAAGATGGGAACG-CAAAGACGAAGTTGCGT-AGCCATCTTGGCTTT 1365
|| ||| || ||||| || || ||| ||| ||| |||||| | |||||||||||||||
Sbjct 1364 ATCATG-TTCGAAGAGGAAGG-AACTTCAAGGACAAAGTTGA-TCAGCCATCTTGGCTTT 1420
Query 1366 AGTTTACC-ATCTGAGGAAAATGATCA 1391
| ||| || || || ||||||||||||
Sbjct 1421 ACTTTGCCTAT-TGCGGAAAATGATCA 1446
Score = 206 bits (111), Expect = 1e-51
Identities = 305/397 (77%), Gaps = 20/397 (5%)
Strand=Plus/Plus
Query 2521 CCTGTAGCTCCACCACCAACTGTTCAGACTGCAGATACTTCCAATGTACCAGCCCACCAG 2580
|||| | |||| |||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 2954 CCTGCAACTCCGCCACCAACTGTTCAGACTGCAGATACTTCCAACGTTCCAGCCCACCAG 3013
Query 2581 AAACCTATTG-TGGCTTCATTGACAAGGCTATTTAAAGAGACATTTGAACCATTAAGAGG 2639
|||||| | | | || | ||||||||||| ||||| ||||||| ||| || | ||||
Sbjct 3014 AAACCTGT-GATAGCAACGTTGACAAGGCTTTTTAACGAGACATCGGAAGCACTGGGAGG 3072
Query 2640 TTATTCAAGAG-ATACTCCTGCCAAGAAGCGTGAGGCAGAAGATAATTGCTCAAGAAAGC 2698
|| | | | | |||| | |||||||||||| |||||| || ||| |||||
Sbjct 3073 CG---CACGTGCAAA-TCCTACTAAGAAGCGTGAGATAGAAGACAA---CTCGAGAAAAT 3125
Query 2699 TAGGAGCTCTGTTT-TCAAAACTAAATAATGGGGACATCTCGAAGAACGCTGCTGAAAAA 2757
|||| ||||||||| | ||| || || | || |||||||| ||||| ||||| || |||
Sbjct 3126 TAGGTGCTCTGTTTGTGAAA-CTCAACAGCGGAGACATCTCCAAGAATGCTGCGGACAAA 3184
Query 2758 CTCACTCAGCTCTGTCAAGCTCTGGACAA-ACGTGATTTTGGTGCAGCG-TTAAAAATAC 2815
||| | ||||| ||||||||||||||||| | ||| | | ||||| || ||| |||
Sbjct 3185 CTCGCACAGCTGTGTCAAGCTCTGGACAACAA-TGACTACAGCGCAGCCCTTCAAA-TAC 3242
Query 2816 AGGGGCTTATGACAAGCACCGAATGGGATGAGTGCAG-TTCTTGGCTTCCAACACTTAAG 2874
||| ||| |||| | || ||||||||| || |||| |||| |||| ||||||| |||
Sbjct 3243 AGGTACTTCTGACGACCAACGAATGGGACGAATGCAACTTCT-GGCTGGCAACACTAAAG 3301
Query 2875 AAAATGATCGTCACGG-GAAGGCAAAATGTGCGGTGA 2910
||||| |||| || || |||||| |||||| |||
Sbjct 3302 CGGATGATGGTCAAGGCGA-GGCAAAGTGTGCGATGA 3337
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109852266580
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5