BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18835.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472107 jgi|Araly1|472107|fgenesh2_kg.1__2061__AT1G18835.1 490 2e-138
> Ahg472107 jgi|Araly1|472107|fgenesh2_kg.1__2061__AT1G18835.1
Length=295
Score = 490 bits (265), Expect = 2e-138
Identities = 285/295 (97%), Gaps = 0/295 (0%)
Strand=Plus/Plus
Query 3 GGGAGATCAGTTTACGAAGAAGATGAAGAAGAGGCAAGTGGTGATAAAACAGAGAAAAAG 62
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GGGAGATCAGTTTACGAAGAAGATGAAGAAGAGGCAAGTGGTGATAAAACAGAGAAAAAT 60
Query 63 CTCTTACACTATGACTTCTTCTTCAAGCAACGTCCGTTACGTTGAGTGTCAGAAGAATCA 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTCTTACACTATGACTTCTTCTTCAAGCAACGTCCGTTACGTTGAGTGTCAGAAGAATCA 120
Query 123 TGCCGCTAATATTGGCGGCTACGCTGTTGACGGTTGCCGGGAGTTTATGGCAAGCGGCGG 182
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 121 TGCCGCTAATATCGGCGGCTACGCTGTCGACGGTTGCCGGGAGTTTATGGCAAGCGGCGG 180
Query 183 AGATGATGCTTTGACGTGTGCTGCCTGTGGCTGTCACCGGAATTTTCACCGGAGGGAAGT 242
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 181 CGATGACGCTTTGACGTGTGCTGCTTGTGGCTGTCACCGGAATTTTCACCGGAGGGAAGT 240
Query 243 TGACACGGAGGTTGTTTGTGAGTATTCTCCTCCGAATGCAAACAACTGATGAACG 297
||| ||||||||||||||||||||||||||||||||||||||| ||| || ||||
Sbjct 241 TGATACGGAGGTTGTTTGTGAGTATTCTCCTCCGAATGCAAACGACTAATTAACG 295
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10492786975
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5