BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18840.1
Length=2360
Score E
Sequences producing significant alignments: (Bits) Value
Ahg335142 jgi|Araly1|335142|fgenesh1_pg.C_scaffold_1001707 2623 0.0
Ahg926848 jgi|Araly1|926848|scaffold_202409.1 494 2e-138
> Ahg335142 jgi|Araly1|335142|fgenesh1_pg.C_scaffold_1001707
Length=1722
Score = 2623 bits (1420), Expect = 0.0
Identities = 1623/1723 (94%), Gaps = 5/1723 (0%)
Strand=Plus/Plus
Query 422 ATGGGAAAGCCTGCAAGGTGGTTAAAAAGTGTACTACTTGGAAAGAAACCATCTAAATCT 481
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGAAAGCCTGCTAGGTGGTTAAAAAGTGTACTACTTGGAAAGAAACCATCTAAATCT 60
Query 482 AGTGGTTCTAAAGATAAGGAGAGAATTGTGAATGGAAAAGAAGTAGTGGTTATATCAAAG 541
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 AGTGGTTCTAAAGATAAGGAGAGAATTGTGAATGGAAAAGAAGTAGTGGTTATTTCAAAG 120
Query 542 ATTGAAGAATCCGATGTTGTTTCGGATCTTTCATCAATTGGAAATGCAGCAGTCTATACC 601
||||||||||||||||||||||| |||||| |||| ||||||||||||||| | || |||
Sbjct 121 ATTGAAGAATCCGATGTTGTTTCAGATCTTCCATCCATTGGAAATGCAGCAATTTACACC 180
Query 602 AGTGGTATTGTAGAGACGCAGAATCTAAAACATGAAGATGTTTCGGACGACGAGATACAA 661
|||||||| | |||||| ||||||||| |||||||| ||||||| ||| |||||||||||
Sbjct 181 AGTGGTATGGCAGAGACACAGAATCTAGAACATGAAAATGTTTCAGACAACGAGATACAA 240
Query 662 GTTTCTGAGGTCCAACCAACAGATTCTCAAGATGTTGCTTCTGTTCCTGATGATTCGCTA 721
||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 241 GTTTCCGAGGTTCAACCAACAGATTCTCAAGATGCTGCTTCTGTTCCTGATGATTCGCTA 300
Query 722 TCCGAATCAGAGAAAATTCAACAAGAGATCGCAGCAGTTACCGTGCAGGCTGCGTATAGA 781
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 301 TCCGAATCAGAGAAAATTCAACAAGAGATTGCAGCAGTTACCGTGCAGGCTGTGTATAGA 360
Query 782 GGATACTTGGCACGACGTGCTTTCAAGATATTAAAAGGTATAATAAGGCTACAAGCACTT 841
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GGCTACTTGGCTCGACGTGCTTTCAAGATATTAAAAGGTATAATAAGGCTACAAGCACTT 420
Query 842 ATCCGTGGTCACATGGTTAGAAGGCAAGCTGTTTCGACTCTGTGCTGTGTTATGGGAATT 901
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 421 ATCCGTGGTCACATGGTTAGGAGGCAAGCTGTTTCGACTCTGTGCTGTGTTATGGGAATT 480
Query 902 GTCAGATTGCAAGCACTTGCTCGTGGGAGAGAGATCAGACATTCAGACATTGGAGTTGAA 961
||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||
Sbjct 481 GTCAGATTGCAAGCACTTGCTCGAGGAAGAGAGATCAGACATTCCGACATTGGAGTTGAA 540
Query 962 GTTCAGAGGAAATGTCA-TTTGCATCATCAGCCTTTAGAGAATAAAGCCAACTCGGTTGT 1020
|||||||||||||| | ||| ||||||||||||||||||||||||| || || |||||
Sbjct 541 GTTCAGAGGAAATGCCGGTTTT-ATCATCAGCCTTTAGAGAATAAAGCAAAATCTGTTGT 599
Query 1021 TGATACACATTCTTACTTGGGAATCAATAAGCTAACAGGAAATGCTTTTGCTCAGAAGCT 1080
|||||||||| ||||| |||||||||| |||||||||| |||||||||||||||||||||
Sbjct 600 TGATACACATACTTACCTGGGAATCAAGAAGCTAACAGCAAATGCTTTTGCTCAGAAGCT 659
Query 1081 TCTAGCTTCATCGCCAAACGTGCTGCCTTTGTCCCTCGACAATGATTCTTCCAATTCAAT 1140
|||||||||||||||||||||| |||| |||||||| |||||||||||||||| ||||||
Sbjct 660 TCTAGCTTCATCGCCAAACGTGATGCCGTTGTCCCTTGACAATGATTCTTCCAGTTCAAT 719
Query 1141 CTGGTTAGAGAACTGGTCAGCATCTTGCTTCTGGAAACCAGTTCCTCAGCCAAAGAAAGC 1200
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 720 CTGGTTAGAGAACTGGTCAGCTTCTTGCTTCTGGAAACCAGTTCCTCAGCCAAAGAAAGT 779
Query 1201 ATCACTCAGAAAATCTCAGAAGAAGTTTGCCAGTAATCCTCAGATAGTCGAGGCTGAGTT 1260
|||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 780 ATCAGTCAGAAAAACTCAGAAGAAGTTTGCCAGTAATTCTCAGATAGTCGAGGCTGAGTT 839
Query 1261 TGCGAGACCAAAGAAGAGTGTTCGCAAAGTCCCTTCTTCAAATCTCGACAATTCCTCGGT 1320
||| |||||||||||||||||||||||||||||| ||||||||||| ||| |||| ||||
Sbjct 840 TGCTAGACCAAAGAAGAGTGTTCGCAAAGTCCCTACTTCAAATCTCAACAGTTCCCCGGT 899
Query 1321 GGCACAAACATCATCTGAGCTTGAGAAACCCAAACGCAGCTTCCGCAAGGTTTCAACAAG 1380
|||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GGCACAGACATCATTTGAGTTTGAGAAACCCAAACGCAGCTTCCGCAAGGTTTCAACAAG 959
Query 1381 CCAATCTGTAGAACCACTACCGTCTATGGACAATCCTCAAGTTGATCTAGAGAAAGTGAA 1440
||||||||||||||| || ||| |||||||||||||||||||||||||||| ||||||||
Sbjct 960 CCAATCTGTAGAACCTCTTCCGGCTATGGACAATCCTCAAGTTGATCTAGAAAAAGTGAA 1019
Query 1441 ACGTGGCTTGAGAAAAGTACATAATCCCGTAGTTGAGAACTCTATCCAACCTCAACTGGT 1500
||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1020 ACGCGGCTTGAGGAAAGTACATAATCCCGTAGTTGAGAACTCTATCCAACCTCAAGTGGT 1079
Query 1501 TCCACAGATTGCAGTTGAAAAGCCAAATGGTAGTTTAGAAGAATCTGTGAATGCCTTTGA 1560
||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 1080 TCCACAGATTGCAGTCGAAAAGCCAAATGCTGGTTTAGAAGAATCTGTGAATGCCTTTGA 1139
Query 1561 TGAAGAGAAAGAAGATGAAGTGGCTGAGACAGTGGTG---CAACAACCTGAAGAGTTGAT 1617
|| ||||||||| |||||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct 1140 TGGAGAGAAAGATGATGAAGTGGCTGAGACAGTGGTGGAACAACAACCTGAGGAGTTAAT 1199
Query 1618 ACAAACTCATACACCATTGGGGACCAATGAATCTCTTGATTCCACATTGGTCAACCAAAT 1677
||||||||||| ||||||||| | ||||||| | ||||||||||| ||||||||||||||
Sbjct 1200 ACAAACTCATAAACCATTGGGAAACAATGAAGCACTTGATTCCACTTTGGTCAACCAAAT 1259
Query 1678 CGAAGAGAGTGAAGAAAATGTAATGGCCGAGGAAAAGGAGGATGTAAAAGAAGAGAGGAC 1737
||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||| ||
Sbjct 1260 CGAAGAGAGTGAAGAAACTGTAATGGCTGAGGAAAAGGAGGATGCAAAAGAAGAGAGAAC 1319
Query 1738 TCCCAAACAAAACCATAAGGAGAATTCAGCTGGGAAGGAGAATCAGAAATCCGGGAAAAA 1797
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1320 TCCCAAACAAAACCATAAGGAAAATTCAGCTGGCAAGGAGAATCAGAAATCCGGGAAAAA 1379
Query 1798 GGCTTCTTCGGTTACTGCTACTCAAACCGCCGAGTTTCAAGAGAGTGGTAATGGTAATCA 1857
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1380 GGCTTCTTCGGTTACTACTACTCAAACCGCCGAGTGTCAAGAGAGTGGTAATGGTAATCA 1439
Query 1858 GACTAGTAGCCCGGGAATACCGAGCTATATGCAGGCGACTAAATCCGCTAAAGCAAAGCT 1917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 GACTAGTAGCCCGGGAATACCGAGCTATATGCAGGCGACTAAATCCGCTAAAGCAAAGCT 1499
Query 1918 GAGGCTACAAGGCTCTTCTTCACCTAGGCAATTAGGGACAACTGAGAAAGCCAGTAGACG 1977
|||||||||||| |||||||||||||||||| | ||||| ||||||||||||||||||||
Sbjct 1500 GAGGCTACAAGGTTCTTCTTCACCTAGGCAACTGGGGACTACTGAGAAAGCCAGTAGACG 1559
Query 1978 TTACTCTCTACCATCTTCAGGTAATAGTGCAAAAATCACTTCTCATTCTCCTAAAACAAG 2037
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 1560 TTACTCTCTACCATCTTCAGGTAATAGTGCAAGAGTCACTTCTCATTCTCCTAAAACAAG 1619
Query 2038 AGTCTCAAACTCGAGTGGCAAAAGCGGGAACAAGACAGAGAAAACTCTTCTTTCGTCCCG 2097
|||||| ||||| ||||||||| |||||| |||||||||||| ||||||||||||||||
Sbjct 1620 AGTCTCTCACTCGGGTGGCAAAAACGGGAATAAGACAGAGAAACCTCTTCTTTCGTCCCG 1679
Query 2098 AGAAGGAAACGGTAAGGCAACTCCGGTAGAGTGGAAGAGATGA 2140
|||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 1680 AGAAGGAAACGGGAAGACAACTCCGGTAGAGTGGAAGAGATGA 1722
> Ahg926848 jgi|Araly1|926848|scaffold_202409.1
Length=1812
Score = 494 bits (267), Expect = 2e-138
Identities = 858/1127 (76%), Gaps = 106/1127 (9%)
Strand=Plus/Plus
Query 417 ACATAATGGGAAAGCCTGCAAGGTGGTT-AAAAAGTGTACTACTTGGAAAGAAACCATCT 475
|||| ||||| ||| || ||| |||||| || || |||| | |||||||| ||| | |||
Sbjct 18 ACATTATGGGGAAGTCTACAAAGTGGTTGAAGAA-TGTATTGCTTGGAAAAAAAACTTCT 76
Query 476 AAATCTAGTGGTTCTAAA-GATAAGGAGAGAATTGTGAATGGAAAAGAAGTAGTGGTTA- 533
|||||||||||||| ||| || || |||||| |||||| |||||| || ||| ||||||
Sbjct 77 AAATCTAGTGGTTCCAAAGGA-AAAGAGAGAGTTGTGAGTGGAAATGAGGTACTGGTTAC 135
Query 534 TATCAAAGATTGAAGAATCCGATGTTGTTTCGGATCTTTC-ATCAATT-GGAAATGC--A 589
| |||||| | |||||||| ||||| || || |||| ||| ||| || | | ||| |
Sbjct 136 T-TCAAAGGTAGAAGAATCAGATGTGGTATCAGATC-TTCAATC-TTTCGCAGTTGCAGA 192
Query 590 G--CAGT-C---T-AT---ACCAGTGGTATTG-TAGAGACGCAGAATCTAAAACATGAAG 638
| || | | | || | |||||||| || |||||||||| ||| || | | |||||
Sbjct 193 GACCAATACAGTTGATAGAAGCAGTGGTA-TGTTAGAGACGCAAAATGTAGAGCCTGAAG 251
Query 639 ATG-TTTCGGACGACGAGATACAAG-TTTCTGAGGTCCAACCAACAGATTCTCAAG-ATG 695
| | | || || || || || || || |||||| ||||||||||||||| || |||
Sbjct 252 A-GATCTCAGATGATGAAAT-TGAGCTTCCTGAGGGAAAACCAACAGATTCTC-AGAATG 308
Query 696 TTGCTTCTGTTCCTGATGATTC-GCTATCCGAAT-CAGAGAAAATTCAACAAGAGATCGC 753
|||| |||||| ||| |||| | ||| | || |||||| ||| ||||||||||| ||
Sbjct 309 TTGCACCTGTTCAAGATAATTCAG-TATGTG-ATGCAGAGAGAATCCAACAAGAGATTGC 366
Query 754 AGC-A-GTTACCGTGCAGGCTGCGTATAGAGGATACTTGGCACGACGTGCTTTCAAGATA 811
||| | | | | ||||||||||||| |||||| |||||||| || |||||||| | |
Sbjct 367 AGCAACG-T-CTGTGCAGGCTGCGTTTAGAGGTTACTTGGCTCGGCGTGCTTTTTGGGCA 424
Query 812 TTAAAAGGTATAATAAGGCTACAAGCACTTATCCGTGGTCACATGGTTAGAAGGCAAGCT 871
| ||||| ||||||||||||||||||||||||||||||||| ||||||| || ||||||
Sbjct 425 CTCAAAGGCATAATAAGGCTACAAGCACTTATCCGTGGTCACCTGGTTAGGAGACAAGCT 484
Query 872 GTTTCGACTCTGTGCTGTGTTATGGGAATTGTCAGATTGCAAGCACTTGCTCGTGGGAGA 931
||| | ||||| | || | | |||||||||||||| ||||||||| ||||||| || |||
Sbjct 485 GTTGCAACTCTTTTCTCTATCATGGGAATTGTCAGGTTGCAAGCATTTGCTCGAGGAAGA 544
Query 932 GAGATCAG-ACATTCAGACATTGGAGTTGAAGTTCAGAGGAAATGTCAT-TTGCATCATC 989
|||||||| | | || || ||||||||| ||||| | |||||||| || |||| | |
Sbjct 545 GAGATCAGGA-AGTCTGATATTGGAGTTCAAGTTTATAGGAAATG-CAGATTGCCGC-T- 600
Query 990 AGCCTTTAGAGAATAAAGCCAACTCGGTTGTTGATACACATTCTTAC-TTGGGAATCAAT 1048
|| || || | | |||| | | | |||| || ||||| |||| ||||||
Sbjct 601 -GC-TTCAGGGGAGCAAGCT---T-GCAAATCC-TACAGATGCTTACCTTGG-AATCAAG 652
Query 1049 AAGCTAACAGGAAATGCTTTTGCTCAGAAGCTTCTAGCTTCATCGCCAAACGTGCTGCCT 1108
|| ||||||| ||||||||||||| ||||||||| |||||||| ||||| ||||| |||
Sbjct 653 AAACTAACAGCCAATGCTTTTGCTCTGAAGCTTCTCGCTTCATCACCAAAAGTGCTACCT 712
Query 1109 TTGTCCCTCGACAATGATTC-T----TCCA-ATTCAATCT-G----G-TTAGAGAACTGG 1156
|| | || | ||||||| | |||| | |||| || | | ||||||||||||
Sbjct 713 --GTACA-CGCCTATGATTCATCCGATCCAGACTCAAACTTGATTTGGTTAGAGAACTGG 769
Query 1157 TCAGCATCTTGCTTCTGGAAACCAGTTCCTCAGCCAAAGAAAGC-ATCACTCAGAAAATC 1215
||||| || ||||||||||||||||||||||| || |||||| | || | ||||||| |
Sbjct 770 TCAGCCTCATGCTTCTGGAAACCAGTTCCTCAACCGAAGAAAACGATAAG-CAGAAAACC 828
Query 1216 TCAGAAGAAGTTTGCCAGTAATCCTCAGATAGTCGAGGCTGAGTTTGCGAGACCAAAGAA 1275
|||||| ||| | | | | ||||||||||||| | ||| | ||| |||||
Sbjct 829 TCAGAACAAG----C---T--T--T----TAGTCGAGGCTGAATCTGCTAAACCCAAGAA 873
Query 1276 GAGTGTTCGCAAAG-TCCCTTCTTCAAA-TCTCGACAA-TTCCTCGGTGGCACAAACATC 1332
|||||| || |||| ||| | || |||| | | || || |||||| || ||| |||||
Sbjct 874 GAGTGTCCGTAAAGCTCC-TGCTGCAAACTTT-GA-AAGTTCCTCAGT---ACAGACATC 927
Query 1333 ATCTGAGCTTGAGAAACCCAAACGCAGCTTCCGCAAGGTTTCAACAAGCCAATCTGTAGA 1392
| |||| ||||||||||||||||||| ||||| || ||||||| |||| || ||||
Sbjct 928 TTTTGAGTTTGAGAAACCCAAACGCAGTTTCCGGAAAGTTTCAA---GCCAGTCAATAGA 984
Query 1393 ACCACTACCGTCTATGGACA-ATCCTCA-AGTTGATCTAGAGAAAGTGAAACGTGGCTTG 1450
|||| | | || | || | ||||||| | |||| || || ||||| |||||| |||||
Sbjct 985 GCCAC--CTG-CTGTCGA-AGATCCTCAGA-TTGAACTTGAAAAAGTTAAACGTAGCTTG 1039
Query 1451 AGAAAAGTACATAATCCCGTAGTTGAGAA-CTCTATCCAACCTCAAC 1496
|| || ||||||||||| |||||||| || |||||||||||||||||
Sbjct 1040 AGGAAGGTACATAATCCTGTAGTTGA-AAGCTCTATCCAACCTCAAC 1085
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88902631830
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5