BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18850.1
Length=1456
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472110 jgi|Araly1|472110|fgenesh2_kg.1__2064__AT1G18850.1 2204 0.0
> Ahg472110 jgi|Araly1|472110|fgenesh2_kg.1__2064__AT1G18850.1
Length=1436
Score = 2204 bits (1193), Expect = 0.0
Identities = 1360/1439 (95%), Gaps = 17/1439 (1%)
Strand=Plus/Plus
Query 1 TTTAGCTTTTCATCTTTACCTGTCTCTGCCCTTAACCTCACACAGATATCGAGTCTCGGC 60
||| |||||||||||||| |||||||| | |||||||||||||||||||||| ||| |||
Sbjct 1 TTTGGCTTTTCATCTTTATCTGTCTCTTCTCTTAACCTCACACAGATATCGACTCTAGGC 60
Query 61 GATTGAAGTGAACTCTCATCCTTATAATTTCATCC-GAAAGATTTTGGATAAAGTTTTGA 119
|||| ||||||||||| |||||||||||||| ||| |||||||||||||||||||||||
Sbjct 61 GATTCAAGTGAACTCTTATCCTTATAATTTCCTCCTCAAAGATTTTGGATAAAGTTTTGA 120
Query 120 --tttttttGGTTCGCAATGACGCTGCTCGAAGCTATCTCCAACGCCGTAGCGAATCAGG 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTTTTTTTTGGTTCGCAATGACGCTGCTCGAAGCTATCTCCAACGCCGTAGCGAATCAGG 180
Query 178 ACAAGGTCGACTCGCAATCCGATTATCCAATCCCTCTTAGCCACGATGGTATCTTTGCGA 237
|||||||||| ||||| |||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 181 ACAAGGTCGATTCGCAGTCCGATTATCCATTCCCTCTTAGCCACGATGGTATCTTCGCGA 240
Query 238 ATCTGAAACCAAAGCTAGAAAACCCTAATCTTGGTACCCTTGTCAATCCAATTTCCGGGT 297
| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 241 ACCTGAAACCGAAGCTAGAAAACCCTAATCTTGGTACCCTAATCAATCCAATTTCCGGGT 300
Query 298 GGGGAATCTCTGAAAGTGATGTTGAAGTCATCGATTTGGGTAAAAAGTTTTCATCTAAGC 357
|||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 301 GGGGAATCTCCGGAAGTGATGTTGAAGTTATCGATTTGGGTAAAAAGTTTTCATCTAAGC 360
Query 358 TGAAAAGGAAGCTTAAGGATACTAACGGGTTTGTCAAAGATGAGTTTGTCAAGATGTTAA 417
| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 361 TCAAAAGGAAGCTTAAGGATACTAACGGGTTTGTCCAAGATGAGTTTGTCAAGATGTTGA 420
Query 418 AGCAGTTTCTTGAGAAAATTGGTGAGAAAGTTGGGATTTCAGAGGCTGAGTCTGAGATGG 477
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 421 AGCAGTTTCTTGAGAAAATTGGTGAGAAAGTTGGGATTTCAGAGGCTGAGCCTGGGATGG 480
Query 478 TTTTGGGAGATCAAGCTGGTTCTGAGATACAGATACTGGTGGAGAAAAATGGGTTTTTGA 537
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 481 TTTTGGAAGATCAAGCTGGTCCTGAGATACAGATACTGGTGGAGAAAAATGGGTTTTTGA 540
Query 538 TGGGTAGAGATGTATCTGGTTTAGTGTTGAAAGGTTGTATTAGTCTAGAGATGTGGGAGC 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TGGGTAGAGATGTATCTGGTTTAGTGTTGAAAGGTTGTATTAGTCTAGAGATGTGGGAGC 600
Query 598 TAGTGGAAATTTTGATTTCAAACTCCTTGGTTGATCATTCTTCATACTCTTATTTAGTTA 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TAGTGGAAATTTTGATTTCAAACTCCTTGGTTGATCATTCTTCATACTCTTATTTAGTTA 660
Query 658 GCAATCTTGTTGAGAAGCAAAGGTCAGATTTGCTTTGCGTAGTGATCAAAGAAGCTTCAG 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GCAATCTTGTTGAGAAGCAAAGGTCAGATTTGCTTTGCGTAGTGATCAAAGAAGCTTCAG 720
Query 718 ATCTTGGGGCAACTGAGCTACTTTCAATCTTGAAGTATTTT-TTATGCCCATCAAAGGAA 776
||||||||||||| |||||||||| ||||||||||||||| || |||||||||||||||
Sbjct 721 ATCTTGGGGCAACAGAGCTACTTTTGATCTTGAAGTATTTTCTT-TGCCCATCAAAGGAA 779
Query 777 GCAATTAGCACTATGGCTAAGGTAAGAGAAGAATGGGAGAGTCAGGCTATGTTGGCTATT 836
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 780 GCAATTACCACTATGGCTAAGGTAAGAGAAGAATGGGAGAGTCAGGCTATGTTGGCCATT 839
Query 837 GAAAAGGTGAGCAACACAGAGCTATCAAAGAAGTCTAAAGTTGCAGAAGAGGCTTCTATC 896
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 840 GAAAAGGTGAGCAACACAGAGCTATCAAAGAAGTCTAAAGTTGCTGAAGAGGCTTCGATC 899
Query 897 TTGTTAATGGTTGCTCATGACGGGTTTTCAACCTCAGAGCTTTGCCTGCATTACTTGTTA 956
||| | ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 900 TTGCTGATGGTTGCTCATGACGGGTTTTCTACCTCTGAGCTTTGCCTGCATTACTTGTTA 959
Query 957 GCTTCACGGAATGTTGACGAAGTCATGTTTGCATCTGCAGTCAGTAAGTTGAATGGCAAT 1016
||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 960 GCTTCACGGAACGTTGATGAAGTCATGTTTGCATCTGCAGTCAGTAAGTTGAATGGTAAT 1019
Query 1017 GAGATGGGTAGCTTTATTCGATACCTCTCTAAATGGATGAAGAAGTATGAGATGTTCCCA 1076
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GAGATGAGTAGCTTTATTCGATACCTCTCTAAATGGATGAAGAAGTATGAGATGTTCCCT 1079
Query 1077 CAAGCTGGTCCATGCCCTAAAGCCGCCTCCAAGCTTGGTTTGAAACTATGCAACTGGGTT 1136
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1080 CAAGCTGGTCCATGCCCTAAAGCCGCCTCCAAGCTCGGTTTGAAACTATGCAACTGGGTT 1139
Query 1137 CCTGAACTC-ACAGACATTACCAAATGTTTGGGACTTCTTATCGATGAGAACTTCTCCAC 1195
||||||||| | |||||| |||||||||||||||| | ||||||||||||||||||||||
Sbjct 1140 CCTGAACTCGA-AGACATAACCAAATGTTTGGGACGTATTATCGATGAGAACTTCTCCAC 1198
Query 1196 TCTGGTTCTGTACTCGGATTTGCATGAAGAGCTAAAGTCTATTGCAAGAGTAGCCGATGG 1255
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1199 CCTGGTTCTGTACTCGGATTTGCATGAAGAGCTAAAGTCTATTGCAAGAGTAGCAGATGG 1258
Query 1256 GTTAGCTTCAGAATCAAAACTTTCCTGTTTTGTGGCTAATGTGGTTGAAAGTTTGAAGCT 1315
||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||| ||
Sbjct 1259 TTTAGCCTCAGAATCAAAACTTTGCTGTTTTATGGCTAATGTGGTTGAAAGTTTGAAACT 1318
Query 1316 TGGAGCTGCCCGAAACTAGATTTTCACAATT----GT-TGGA-G-C-TTA-ATGCAACCC 1366
|||||||||||||||||||||||||||| || || | || | | || |||||||||
Sbjct 1319 TGGAGCTGCCCGAAACTAGATTTTCACAGTTCTCAGTCTAGATGGCGTTTGATGCAACCC 1378
Query 1367 TGTTTTCACTTTTTATTATGGTCTCCAGTGACATTTGTATTTTCTAGTTTCAGTTCATC 1425
||||||||||| |||| ||| ||||||||| | ||||||||||||||||||||||||||
Sbjct 1379 TGTTTTCACTTGTTAT-ATGTTCTCCAGTGCCTTTTGTATTTTCTAGTTTCAGTTCATC 1436
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54469050350
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5