BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18860.1
Length=1463
Score E
Sequences producing significant alignments: (Bits) Value
Ahg335144 jgi|Araly1|335144|fgenesh1_pg.C_scaffold_1001709 1845 0.0
Ahg908362 jgi|Araly1|908362|Al_scaffold_0002_1443 176 4e-43
> Ahg335144 jgi|Araly1|335144|fgenesh1_pg.C_scaffold_1001709
Length=1449
Score = 1845 bits (999), Expect = 0.0
Identities = 1330/1479 (90%), Gaps = 66/1479 (4%)
Strand=Plus/Plus
Query 3 ATGGATGAGGCTAAAGAGGAAAATCGAAGACTAAAGTCATCATTGAGTAAAATCAAGAAA 62
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGGAGGCTAAAGAGGAAAATCGAAGACTAAAGTCATCATTGAGTAAAATCAAGAAA 60
Query 63 GATTTTGACATCCTTCAAACACAATACAACCAATTAATGG-CCAAACATAACGAACCAAC 121
|||||||||||||||||| |||||||| |||||||||||| || ||||||| |||| ||
Sbjct 61 GATTTTGACATCCTTCAAGCACAATACCACCAATTAATGGTCC-AACATAAAGAACTAAA 119
Query 122 CAAGTTC-CAATCAAAAGGGCATCATCAAGACAAAG-----G-CGAAGATGAAGACAGAG 174
||||||| | |||||||||||||||||||||||||| | |||| ||||||||| ||
Sbjct 120 CAAGTTCTC-ATCAAAAGGGCATCATCAAGACAAAGAAAAAGACGAAAATGAAGACAAAG 178
Query 175 AAAAAGTTAACGAACGTGAAGAACTTGTCTCGTTGAGCCTAGGCAGACGGTTAAATTCA- 233
||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 179 AAATAGTTAACGAACGCGAAGAACTTGTCTCGTTGAGCCTAGGCAGACGGTTAAAGTCAC 238
Query 234 GAGGTTCCAAGTGG--T--T--CGAATAAAGAAGaaaaaaaTAAAGATGT--T-GAAGAA 284
| ||| ||||||| | | |||| ||||||||||||| ||||||| | | || |||
Sbjct 239 CA-GTTTCAAGTGGTTTGATGACGAACAAAGAAGAAAAAAGTAAAGATATAATGGAGGAA 297
Query 285 GCGGAAGGTGACAGAAA-TTATGATGATAATGAAAAAAGCAGTATTCAAGGGTTGAGTAT 343
|||| | ||||| ||| ||| ||||||||||||||||| |||| ||||||||||||| |
Sbjct 298 GCGGGTGATGACAAAAATTTA-GATGATAATGAAAAAAGTAGTAATCAAGGGTTGAGTGT 356
Query 344 GGGGATTGAATACAAGGCTTTGAGTAATCCTAATGAGAAGTTAGAGATTGATCATAATCA 403
|||||||||||||||||| ||| |||||| |||||||||||||| |||||||||| |||
Sbjct 357 AGGGATTGAATACAAGGCTCTGAATAATCCAAATGAGAAGTTAGATATTGATCATATTCA 416
Query 404 AGAAACCATGTCGTTGGAGATTAGTAACAATAATAAGA-TCAGATCACAAAATAGTTTTG 462
|||||| ||||||||| ||||||||||||||||||||| || |||| | ||||||| ||
Sbjct 417 AGAAACAATGTCGTTGAAGATTAGTAACAATAATAAGATTC-TATCAGAGAATAGTTATG 475
Query 463 GGTTTAAGAATGATGGAGATGATCATGAAGATGAAGATGAGATTTTGCCTCAAAACCTTG 522
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 476 GTTTTAAGAATGATGGAGATGATAATGAAGATGAAGATGAGATTTTGCCTCAAAACCTTG 535
Query 523 TTAAGAAAACTAGGGTTTCGGTGAGATCAAGATGTGAGACACCAACGATGAACGACGGAT 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 TTAAGAAAACTAGGGTTTCGGTGAGATCAAGATGTGAGACACCAACGATGAACGACGGAT 595
Query 583 GTCAATGGAGGAAATATGGCCAGAAAATAGCTAAAGGCAATCCATGTCCCCGAGCTTACT 642
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 596 GTCAATGGAGGAAATATGGCCAGAAAATAGCTAAAGGCAACCCATGTCCCCGAGCTTACT 655
Query 643 ATCGTTGCACCATTGCAGCTTCTTGTCCAGTAAGAAAACAGGTGCAAAGATGTTCAGAAG 702
| ||||| |||||||||||||| ||||| ||||||||||||||||||||| |||||||||
Sbjct 656 ACCGTTGTACCATTGCAGCTTCATGTCCCGTAAGAAAACAGGTGCAAAGAAGTTCAGAAG 715
Query 703 ATATGTCTATACTTATCTCAACGTACGAAGGAACACATAACCATCCACTTCCCATGTCAG 762
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 716 ATATGTCTATACTTATCTCAACATACGAAGGAACACACAACCATCCACTTCCCATGTCAG 775
Query 763 CAACTGCCATGGCCTCTGCCACTTCCGCTGCCGCCTCCATGCTTCTCTCCGGCGCCTCCT 822
|||| ||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 776 CAACCGCCATGGCCTCGGCCACTTCCGCTGCTGCCTCCATGCTCCTCTCCGGCGCCTCCT 835
Query 823 CCTCCTCATCCGCCGCAGCTGATCTTCATGGCCTTAACTTCTCTCTTTCCGGCAACAACA 882
||||||| ||| |||||||||||||||| ||||||||||||||||| |||||||| ||||
Sbjct 836 CCTCCTCCTCCACCGCAGCTGATCTTCAGGGCCTTAACTTCTCTCTCTCCGGCAATAACA 895
Query 883 TCACTCCAAAACCTAAAACTCATTTCCTCCAATCC-C--CTTC-T-T-CTTCT---GGCC 933
||||||||||||||||| | | ||||||||||||| | |||| | | ||||| ||||
Sbjct 896 TCACTCCAAAACCTAAATCACCTTTCCTCCAATCCTCTTCTTCCTCTTCTTCTTCTGGCC 955
Query 934 ATCCGACCGTCACTCTCGACCTCACAACCTCCTCCTCGTCGCAGCAACCGTTCTTATCAA 993
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 956 ATCCGACAGTCACTCTCGACCTCACAACCTCCTCCTCCTCGCAGCAACCGTTCTTATCAA 1015
Query 994 TGCTCAATAGATTCAGCTCTCCTCCAAGTAATGTCTCACGATCTAATAGTTATCCTTCAA 1053
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1016 TGCTCAATAGATTCAGTTCTCCTCCTAGTAATGTCTCACGATCTAATAGTTATCCTTCAA 1075
Query 1054 CCAATCTCAACTTTTCAAACAACACCAACACATTGATGAATTGGGGTGGTGGTGGT---- 1109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 CCAATCTCAACTTTTCAAACAACACCAACACATTGATGAATTGGGGTGGTGGTGGTGGTG 1135
Query 1110 --AATCCCAGTGATCAATACCGTGCAGCTTACGGCAACATTAACACCCATCAGCAATCAC 1167
||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 1136 GTAATCCCAATGATCAATACCGTGCAGCTTACAGCAACATTAACACCCATCAGCAATC-C 1194
Query 1168 CTTACCACAAAATCATTCAAACCCGAACCGCCGGGTCATCTTTCGATCCGTTTGGAAGAT 1227
| | || | | ||| || ||||||||||| |||||||||||||
Sbjct 1195 CG-A--AC-----C----------G--CCG--GG-TCATCTTTCGACCCGTTTGGAAGAT 1231
Query 1228 CATCTTCATCACATTCTCCACAAATAAATCTTGATCATATCGGAATCAAGAACATCATCA 1287
|||||||||||||| ||| ||||| |||||||||||||| |||||||||||||| | |
Sbjct 1232 CATCTTCATCACATCCTCTACAAACCAATCTTGATCATATTGGAATCAAGAACATTAAAA 1291
Query 1288 GTCAC-CAAGTGCCATCTTTACCGGCTGAAACAATCAAGGCAATCACGACAGATCCAAGT 1346
|| | |||||||||| | ||||||||||||||||||||||||||||||||||||||| |
Sbjct 1292 CTC-CTCAAGTGCCATATATACCGGCTGAAACAATCAAGGCAATCACGACAGATCCAAAT 1350
Query 1347 TTCCAATCGGCTTTGGCGACAGCTCTATCTTCCATCATGGGCGGCGATTTAAAGATTGAT 1406
|||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1351 TTCCAATCAGCTTTGGCGACTGCTCTATCTTCCATCATAGGCGGCGATTTAAAGATTGAT 1410
Query 1407 CACAATGTGACTAGAAATGAAGCTGAGAAGAGCCCTTAA 1445
|| |||||||||||||||||||| |||||||||||||||
Sbjct 1411 CATAATGTGACTAGAAATGAAGCCGAGAAGAGCCCTTAA 1449
> Ahg908362 jgi|Araly1|908362|Al_scaffold_0002_1443
Length=1083
Score = 176 bits (95), Expect = 4e-43
Identities = 184/226 (81%), Gaps = 10/226 (4%)
Strand=Plus/Plus
Query 534 AGGGTTTCGGTGAGATCAAGATGTGAGACAC-CAACGATGAACGACGGATGTCAATGGAG 592
||||| || ||||| | ||||||||||| | |||| ||||| || ||||| ||||||||
Sbjct 622 AGGGTGTCTGTGAGGGCGAGATGTGAGAC-CGCAACAATGAATGATGGATGCCAATGGAG 680
Query 593 GAAATATGGCCAGAAAATAGCTAAAGGCAATCCATGTCCCCGAGCTTACTATCGTTGCAC 652
||| || || ||||||| || ||||| ||||||||||| |||||||| || || |||||
Sbjct 681 GAAGTACGGTCAGAAAACCGCGAAAGGGAATCCATGTCCACGAGCTTATTACCGATGCAC 740
Query 653 CATTGCAGCTTCT----TGTCCAGTAAGAAAACAGGTGCAAAGATGTTCAGAAGATATGT 708
| || | |||| ||||| || || |||||||||||||| |||| |||||| ||||
Sbjct 741 C-GTG--G-TTCTAGGATGTCCCGTTAGGAAACAGGTGCAAAGGTGTTTAGAAGACATGT 796
Query 709 CTATACTTATCTCAACGTACGAAGGAACACATAACCATCCACTTCC 754
| ||||| || |||| |||||||||||||||||||||||||||||
Sbjct 797 CAATACTGATAACAACCTACGAAGGAACACATAACCATCCACTTCC 842
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54735682065
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5