BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18870.1
Length=1852
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920831 jgi|Araly1|920831|scaffold_102112.1 2464 0.0
Ahg476608 jgi|Araly1|476608|fgenesh2_kg.2__1738__AT1G74710.1 1212 0.0
> Ahg920831 jgi|Araly1|920831|scaffold_102112.1
Length=1580
Score = 2464 bits (1334), Expect = 0.0
Identities = 1492/1569 (95%), Gaps = 8/1569 (1%)
Strand=Plus/Plus
Query 187 TTCCTACGCTGTACACTGTCTATGAACGGATGTGAGGCTGACCACAAAGCACCACTTGGC 246
||||| |||||| |||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 1 TTCCTTCGCTGTTCACTGTATATGAACGGATGTGAGGCTGACCATAAAGCACCACTTGGT 60
Query 247 ACGGTAGAAACAAGGACTCTATCAACGGTGCCATCTCCGGCAGCCGCGACGGAGAGGCTG 306
|||||||||||||||||||| || ||||| | |||||||| ||||||||||||||||||
Sbjct 61 ACGGTAGAAACAAGGACTCTCTCCACGGTTTCGTCTCCGGCGGCCGCGACGGAGAGGCTG 120
Query 307 ATAACCGCCGTCTCTGACCTCAAATCTCAACCGCCTCCATTCTCCTCCGGCATTGTCCGA 366
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 121 ATAACCGCCGTCTCTGACCTCAAATCTCAGTCGCCTCCATTCTCCTCCGGCATTGTCCGA 180
Query 367 TTACAGGTACCAATTGAGCAGAAAATTGGAGCAATCGATTGGCTTCATGCACAGAACGAA 426
||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||
Sbjct 181 TTACAGGTACCAATTGAGCAGCAAATCGGAGCAATCGATTGGCTTCATGCGCAGAACGAG 240
Query 427 ATTCTTCCTCGCAGTTTCTTTTCCCGTCGTAGCGATTCTGGCCGTCCAGATCTTCTTCAA 486
||||||| |||||||||||||||||||| || || | | |||||||||||||||||||
Sbjct 241 GTTCTTCCACGCAGTTTCTTTTCCCGTCGAAGTGACACCGTCCGTCCAGATCTTCTTCAA 300
Query 487 GACTTCTCAAGTGACAATGGATCATCTGATCATAATCCAGTTAGTGTCGCTGGAATCGGG 546
|||||||| |||||||||||||||| ||||| |||||| |||||||| ||||||||||||
Sbjct 301 GACTTCTCGAGTGACAATGGATCATTTGATCGTAATCCGGTTAGTGTTGCTGGAATCGGG 360
Query 547 TCTGCTGTCTTTTTCCGCGATCTCGACCCGTTTTCTCATGATGACTGGAGATCAATCCGA 606
|||||||||||||||||| |||| || |||||||||||||||||||||||||| |||| |
Sbjct 361 TCTGCTGTCTTTTTCCGCAATCTGGATCCGTTTTCTCATGATGACTGGAGATCGATCCAA 420
Query 607 AGG-TTCTTGTCTTCAAAGTCTCCTCTGATTCGTGCCTATGGAGGTCTTCGATTTGATCC 665
||| ||| ||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 421 AGGTTTC-TGTCTTCAAAGTCTCCTCTGATTCGCGCGTATGGAGGTCTTCGATTTGATCC 479
Query 666 T-ACAGGGAAGATCGCTGTGGAATGGGAACATTTTGGCTCGTTTTACTTTACAGTGCCCC 724
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 480 TAAC-GGGAAGATCGCTGTGGAATGGGAACATTTTGGCTCGTTTTACTTTACAGTGCCTC 538
Query 725 AGGTCGAGTTTGATGAGTTTGGAGGAAGCTCAATGCTGGCTGCAACTGTTGCTTGGGACA 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 AGGTCGAGTTTGATGAGTTTGGAGGAAGCTCAATGCTGGCTGCAACTGTTGCTTGGGACA 598
Query 785 ATGAGCTCTCATGGACGCTTGAAAATGCTATTGAAGCACTTCAGGAAACTATGCTTCAGG 844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 ATGAGCTCTCATGGACGCTTGAAAATGCTATTGAAGCACTTCAGGAAACTATGCTTCAGG 658
Query 845 TTTCTTCTGTTATAATGAGATTACGGC-GAGAATCTTTAGGAGTTAT-TGTTGTTAGCAA 902
||||||||||||||||||||||||| | |||||||| |||||||| | | || |||||||
Sbjct 659 TTTCTTCTGTTATAATGAGATTACG-CAGAGAATCTCTAGGAGTT-TCTATTCTTAGCAA 716
Query 903 GAACCATGTTCCAAGTGAAGGAGCCTATTACCCTGCTGTGAATAATGCTCTAGAGATTAT 962
||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||
Sbjct 717 GAACCATGTTCCAAGTGAAGGAGCCTATTACCCGGCTGTAAATAATGCTCTCGAGATTAT 776
Query 963 CAAGGACAAACATTCACCCCTAAGCAAGGTTGTGCTTGCACGCAGTAGCAGAATCATTAC 1022
|| |||||| | ||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 777 AAAAGACAAAAAATCACCGCTAAGCAAGGTTGTGCTTGCACGCAGCAGCAGAATCATTAC 836
Query 1023 GGATACCGACATTGATCCTATCGCTTGGTTAGCACGGTTGCAGTGTGAAGGACAAGACGC 1082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 GGATACCGACATTGATCCTATCGCTTGGTTAGCACGGTTGCAGTGTGAAGGACAAGACGC 896
Query 1083 GTACCAATTCTGTCTTCAACCACCCGGTGCACCAGCATTCATAGGGAACACGCCTGAGAG 1142
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 GTACCAGTTCTGTCTTCAACCACCCGGTGCACCAGCATTCATAGGGAACACGCCTGAGAG 956
Query 1143 ACTCTTCCACAGAAAACATCTAGGTGTCTGCAGTGAGGCTTTGGCTGCAACAAGGCCTAG 1202
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 957 ACTCTTCCACAGAAAACACCTAGGTGTCTGCAGTGAGGCTTTGGCTGCAACAAGGCCTAG 1016
Query 1203 AGGTGATTCAAAGGTTCGTGAAATGGAGATAGAGCGCGACTTACTAACCAGTCCCAAAGA 1262
||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1017 AGGTGATTCAAGGGTTCGTGAATTGGAGATAGAGCGCGACTTACTAACCAGTCCCAAAGA 1076
Query 1263 CGATCTTGAGTTTTCTATTGTCCGAGAGAATATAAGAGAAAAACTTAAAACCATATGTGA 1322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 CGATCTTGAGTTTTCTATTGTCCGAGAGAATATAAGAGAAAAACTTAAAACCATATGTGA 1136
Query 1323 CAGGGTAGTAGTTAAACCCCATAAATCAGTGAGAAAGCTTGCAAGAGTACAGCATCTATA 1382
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1137 CAGGGTAGTAGTTGAACCCCAAAAATCAGTGAGAAAGCTTGCAAGAGTACAGCATCTATA 1196
Query 1383 TTCTCAATTGGCAGGACAGCTAAAAAGAGAAGATGATGAGTTTAACATCTTAACTGCTTT 1442
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 1197 TTCTCAATTGGCAGGACAGCTAAGAAGAGAAGATGATGAGTTTGACATCTTAACTGCTTT 1256
Query 1443 GCATCCGACGCCAGCTGTTTGCGGATGTCCAGTAGAAGAAGCTAGGCTTTTGATTAAACA 1502
||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||| ||
Sbjct 1257 GCATCCGACACCAGCTGTTTGCGGATGTCCAGTAGAGGAAGCAAGGCTTTTGATTAAGCA 1316
Query 1503 AATTGAGTCATTTGATAGAGGAATGTATGCTGGACCTATTGGGTTCTTTGGTGGTGGGGA 1562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1317 AATTGAGTCATTTGATAGAGGAATGTATGCTGGACCTATTGGGTTCTTTGGTGGTGGAGA 1376
Query 1563 GAGTGAATTTTCTGTAGGCATACGATCTGCTTTAGTCGAAAAGGGTCTTGGAGCATTGAT 1622
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1377 GAGTGAATTTTCTGTAGGCATAAGATCTGCTTTAGTCGAAAAGGGTCTTGGAGCATTGAT 1436
Query 1623 CTATGCAGGAACAGGAATCGTTTCAGGAAGCAATCCTTCCTCGGAGTGGAACGAGCTTGA 1682
|||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||
Sbjct 1437 CTATGCAGGAACAGGAATAGTCTCAGGAAGCAATCCATCCTCGGAGTGGAACGAGCTTGA 1496
Query 1683 GCTTAAGATCTCTCAGTTCACTAAGTCACTTGAACATGAGTCAGCTTTGCAACCAATCAA 1742
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1497 GCTTAAGATCTCTCAGTTCACTAAGTCACTTGAACATGAGTCAGCTTTGCAACCGATCAA 1556
Query 1743 CTAAAGAAA 1751
|| ||||||
Sbjct 1557 CTGAAGAAA 1565
> Ahg476608 jgi|Araly1|476608|fgenesh2_kg.2__1738__AT1G74710.1
Length=1850
Score = 1212 bits (656), Expect = 0.0
Identities = 1273/1564 (81%), Gaps = 70/1564 (4%)
Strand=Plus/Plus
Query 203 TGTCTATGAACGGATGTGAGGCTGACCACAAAG-CACCACTTGGCACGGTAGAAACAAGG 261
|||||||||| || ||||||| || | | | | || ||||| || || || ||||||
Sbjct 137 TGTCTATGAATGGTTGTGAGGGAGATTTC-AGGACGCCTCTTGGTACAGTGGAGACAAGG 195
Query 262 ACTCTATCAAC-GGTG-C-CATCTCCGGCAGCCGCGACGGAGAGGCTGATAACCGCCGTC 318
| |||| || | || | ||||||||||||||| || || ||||| || |||||||
Sbjct 196 A--CTAT-GACTGCTGTCTTATCTCCGGCAGCCGCCACTGAAAGGCTAATCTCCGCCGTT 252
Query 319 TCTGACCTCAAATCTCAACCGCC-TCCATTCTCCTCCGGCATTGTCCGATTACAGGTACC 377
||||| |||||||||||||| || | | || ||||||||| | ||||| |||||||| ||
Sbjct 253 TCTGAACTCAAATCTCAACCTCCGT-CGTTTTCCTCCGGCGTCGTCCGGTTACAGGTTCC 311
Query 378 AATTGAGCAGAAAATTGGAGCAATCGATTGGCTTCATGCACAGAACGAAATTCTTCCTCG 437
|||||| ||| |||| |||||||||||||||||||| || ||||| || |||| |||||
Sbjct 312 AATTGACCAGCAAATCGGAGCAATCGATTGGCTTCAAGCCCAGAATGAGATTCAGCCTCG 371
Query 438 CAGTTTCTTTTCCCGTCGTAGCGA-TTCTGGCCGTCCAGATCTTCTTCAAGA-CT-TCT- 493
| ||||||| || ||||| || || | ||| ||||| ||||| || | || || ||
Sbjct 372 CTGTTTCTTCTCTCGTCGGAGTGACGT-TGGTCGTCCCGATCTCCTCCTCGATCTAGCTA 430
Query 494 -C---AA-GTGA-C---AA-TGG--A---TCATCTGATCATAATCCAGTTAGTGTCGCTG 538
| || | || | || || | || ||||||| ||||| ||||| || ||||
Sbjct 431 ACGAGAACGAGAGCGGAAACGGGTCAGTGTCTTCTGATCGTAATCTGGTTAGCGTTGCTG 490
Query 539 GAATCGGGTCTGCTGTCTTT-TTCCGCGATCTCGA-CCCGTTTTCTCATGATGACTGGAG 596
| ||||| ||||| || ||| ||||| || || || ||| || ||||||||||| |||||
Sbjct 491 GTATCGGTTCTGCAGT-TTTCTTCCGTGACCTTGATCCC-TTCTCTCATGATGATTGGAG 548
Query 597 ATCAATCCGAAGGTTCTTGTCTTCAAAGTCTCCTCTGATTCGTGCCTATGGAGGTCTTCG 656
||| ||||| ||||| |||||||||| ||| |||||||||||||||||||| ||| | ||
Sbjct 549 ATCCATCCGGAGGTTTTTGTCTTCAACGTCACCTCTGATTCGTGCCTATGGTGGTATGCG 608
Query 657 ATTTGATCCTACA-GGGAAGATCGCTGTGGAATGGGAACATTTTGGCT-CGTTTTACTTT 714
|||||||||| | || |||||||||||||||||||||| |||||| | | |||||||||
Sbjct 609 TTTTGATCCTA-ATGGCAAGATCGCTGTGGAATGGGAACCTTTTGG-TGCCTTTTACTTT 666
Query 715 ACAGTGCCCCAGGTCGAGTTTGATGAGTTTGGAGGAAGCTCAATGCTGGCTGCAACTGTT 774
||||||| ||||| |||||| |||||||||| ||||| |||||||||||||||||||||
Sbjct 667 TCAGTGCCTCAGGTTGAGTTTAATGAGTTTGGTGGAAGTTCAATGCTGGCTGCAACTGTT 726
Query 775 GCTTGGGACAATGAGCTCTCATGGACGCTTG-AAAATGCTATTGAAGCACTTCAGGAAAC 833
|||||||| |||| ||||| |||||| ||| ||||||||||||||||||||||||| ||
Sbjct 727 GCTTGGGATGATGAACTCTCTTGGACG-TTGGAAAATGCTATTGAAGCACTTCAGGAGAC 785
Query 834 TATGCTTCAGGTTTCTTCTGTTATAATGA-GATTACGG--CGAGAATCTTTAGGAGTTAT 890
|||||||||||||||||||||| ||| || | ||| | | ||| ||| ||||||| ||
Sbjct 786 TATGCTTCAGGTTTCTTCTGTTGTAAAGAAG-TTAAGAAAC-AGA-TCTCTAGGAGT-AT 841
Query 891 -TGTTGTTA-GCAAGAACCATGTTCCAAGTGAAGGAGCCTATTACCCTGCTGT-GAATAA 947
|||| ||| ||||||| |||||||| | |||| || |||| ||||||||| || ||
Sbjct 842 CTGTT-TTAAGCAAGAATCATGTTCCTACCAAAGGGGCTTATTTCCCTGCTGTAGAG-AA 899
Query 948 TGCTCTAGAGATTATCAAGGACAAACA-TTCACCCCT-AAGCAAGGTTGTGCTTGCACGC 1005
||| | ||||| || ||| | ||| | ||| | || || |||||| |||||||| |||
Sbjct 900 GGCTTTGGAGATGATTAAGCAAAAA-AGTTCGTCTCTTAA-CAAGGTCGTGCTTGCTCGC 957
Query 1006 AGTAGCAGAATCATTACGGATACCGACATTGATCCTATCGCTTGGTTAGCACGGTTGCAG 1065
| ||||| || |||||||||||||| |||||||| || |||||| |||||| ||| |||
Sbjct 958 AACAGCAGGATTATTACGGATACCGATATTGATCCCATTGCTTGGCTAGCACAGTTACAG 1017
Query 1066 TGTGAAGGACAAGACGCGTACCAATTCTGTCTTCAACCACCCGGTGCACCAGCATTCATA 1125
|||||||||| || || || || ||||||||||||||||| ||||||||||| || ||
Sbjct 1018 CGTGAAGGACATGATGCATATCAGTTCTGTCTTCAACCACCTGGTGCACCAGCGTTTATT 1077
Query 1126 GGGAACACGCCTGAGAGACTCTTCCACAGAAAACA-TCTAGGTGTCTGCAGTGAGGCTTT 1184
|| ||||||||||||||||| ||||| || || || | |||||||||| ||||| |||||
Sbjct 1078 GGAAACACGCCTGAGAGACTTTTCCAAAGGAATCAAT-TAGGTGTCTGTAGTGAAGCTTT 1136
Query 1185 GGCTGCAACAAGGCCTAGAGGTGATTCAAAGGTTCGTGAAATGGAGATAGAGCGCGACTT 1244
||||||||| ||||||||| || ||||| || ||||| |||||||||||||| |||||
Sbjct 1137 GGCTGCAACTAGGCCTAGATCTGCTTCAAGGGCGCGTGATATGGAGATAGAGCGTGACTT 1196
Query 1245 ACTAACCAGTCCCAAAGACGATCTTGAGTTTTCTATTGTCCGAGAGAATATAAGAGAAAA 1304
|||||||||||| |||||||| |||||||| |||||||| ||||||||||||||||||||
Sbjct 1197 ACTAACCAGTCCGAAAGACGACCTTGAGTTCTCTATTGTACGAGAGAATATAAGAGAAAA 1256
Query 1305 ACTTAAAAC--CATATGTGACAGGGTAGTAGTTAAACCCCATAAATCAGTGAGAAAGCTT 1362
||||| | ||||||||||||||| || ||||| ||||| ||| | ||||| ||||||
Sbjct 1257 G-TTAAA-CGGCATATGTGACAGGGTCGTTGTTAAGCCCCAAAAAACTGTGAGGAAGCTT 1314
Query 1363 GCAAGAGTACAGCATCTATATTCTCAATTGGCAGG-ACAGCTAAA-AAGAGAAGATGATG 1420
|||||||| || || |||||||| ||||||||||| | | || | || |||||||| |
Sbjct 1315 GCAAGAGTGCAACACCTATATTCGCAATTGGCAGGGAAA-CTTACGAAC-GAAGATGACG 1372
Query 1421 AGTTTAACATCTTAACTGCTTTGCATCCGACGCCAGCTGTTTGCGGA-TGTCCAGTAGAA 1479
||||||||||||| ||||| | ||||| || ||||||||||| || | ||||| ||||
Sbjct 1373 AGTTTAACATCTTGGCTGCTCTCCATCCAACTCCAGCTGTTTGTGGGCT-TCCAGCAGAA 1431
Query 1480 GAAGCTAGGCTTTTGATTAAACAAATTGAGTCATTTGATAGAGGAATGTATGCTGGACCT 1539
||||| |||||||||||||| |||| || ||||| ||||||||||||||||| ||||||
Sbjct 1432 GAAGCAAGGCTTTTGATTAAGGAAATAGAATCATTCGATAGAGGAATGTATGCCGGACCT 1491
Query 1540 ATTGGGTTCTTTGGTGGTGGGGAGAGTGAATTTTCTGTAGGCAT-ACGATCTGCTTTAGT 1598
|||||||| |||||||| | ||||||||||||| | || || || | |||| ||| ||||
Sbjct 1492 ATTGGGTTTTTTGGTGGCGAGGAGAGTGAATTTGCAGTCGGAATCA-GATCAGCTCTAGT 1550
Query 1599 CGAAAAGGGTCTTGGAGCATTGATCTATGCAGGAACAGGAATCGTTTCAGGAAGCAATCC 1658
||| ||||||||||| |||||||||||||| || ||||| || || | ||||| | ||
Sbjct 1551 CGAGAAGGGTCTTGGGGCATTGATCTATGCCGGGACAGGGATAGTAGCGGGAAGTGACCC 1610
Query 1659 TTCCTCGGAGTGGAACGAGCTTGAGCTTAAGATCTCTCAGTTCACTAAGTCACTTGAACA 1718
|| || |||||||| |||||||| |||||||| |||||||||||||||||| ||||| |
Sbjct 1611 ATCTTCAGAGTGGAATGAGCTTGATCTTAAGATATCTCAGTTCACTAAGTCAATTGAATA 1670
Query 1719 TGAG 1722
||||
Sbjct 1671 TGAG 1674
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69552787370
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5