BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18880.1
Length=1943
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472112 jgi|Araly1|472112|fgenesh2_kg.1__2066__AT1G18880.1 2953 0.0
> Ahg472112 jgi|Araly1|472112|fgenesh2_kg.1__2066__AT1G18880.1
Length=1901
Score = 2953 bits (1599), Expect = 0.0
Identities = 1810/1909 (95%), Gaps = 25/1909 (1%)
Strand=Plus/Plus
Query 52 AATGGAGGTTGAGAAGACAGAGAAGAACATTGCAGAGGATGATGAGTCTAAGATCATCTA 111
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1 AATGGAGGTTGAGAAGACAGAGAAGAACATTACGGAGGATGATGAGTCTAAGATCATCTA 60
Query 112 CAGAGGATGGAAAGTCATGCCCTTCATCATTGGAAATGAGACATTTGAAAAATTGGGGAT 171
|||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||
Sbjct 61 CAGAGGATGGAAAGTCATGCCCTTCATCATTGGAAATGAGACATTTGAGAAGCTGGGTAT 120
Query 172 TGTTGGAAGTTCATCGAATCTGGTTATATACTTAACGACGGTTTTCAACATGAAGAGCAT 231
|||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 121 TGTTGGGAGTTCATCGAATCTGGTCATTTACTTAACGACGGTTTTCAACATGAAGAGCAT 180
Query 232 CACGGCTGCGAAAGTCGTCAACATCTACGGTGGCACAAGCAACTTTGGCACCATCGTCGC 291
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 181 CACGGCTGCGAAAGTCGTCAACATCTACGGTGGCACTAGCAACTTTGGCACCATCGTCGC 240
Query 292 TGCTTTCCTCTGTGACTCCTACTTTGGCCGCTACAAGACCCTATCTTTCGCCATGATCGC 351
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CGCCTTCCTCTGTGACTCCTACTTTGGCCGCTACAAGACCCTATCTTTCGCCATGATCGC 300
Query 352 TTGCTTTCTCGGTTCGGTGGCAATGGATCTAACGGCTGTGATTCATCCCCTGCATCCAGC 411
||||||||||||||||||||| |||||||||||||||||| ||| || |||||||||||
Sbjct 301 TTGCTTTCTCGGTTCGGTGGCGATGGATCTAACGGCTGTGTTTCCTCAGCTGCATCCAGC 360
Query 412 TCAATGCGCTAAGGAAATAGGAAGCGTGTGCAATGGGCCATCCATCGGACAAATCATGTT 471
| |||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||
Sbjct 361 TAAATGCGCTAAGGAAATAGGAAGCGTGTGCAGTGGGCCATCTATTGGACAAATCATGTT 420
Query 472 TCTCGCCGGAGCAATGGTTTTGCTGGTGATCGGAGCCGGTGGGATTAGGCCATGCAATCT 531
|||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 421 TCTCGCTGGAGCAATGGTTTTGCTGGTGATTGGAGCCGGTGGGATTAGGCCGTGCAATCT 480
Query 532 TCCATTTGGTGCTGATCAGTTCGATCCGAAGACAAAAGAAGGGAAACGAGGGATTGAGAG 591
||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 481 TCCCTTTGGTGCTGATCAGTTTGATCCGAAGACAAAAGAAGGGAGACGAGGGATTGAGAG 540
Query 592 TTTCTTCAATTGGTATTTCTTCACCTTCACGTTTGCTCAGATGGTGTCGTTAACCCTCAT 651
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 541 TTTCTTCAATTGGTATTTCTTCACCTTCACGTTTGCTCAGATGGTGTCGTTAACGCTCAT 600
Query 652 CGTCTATGTTCAGTCAAACGTGAGCTGGAGCATTGGTTTAGCCATCCCAGCTATTCTAAT 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CGTCTATGTTCAGTCAAACGTGAGCTGGAGCATTGGTTTAGCCATCCCAGCTATTCTAAT 660
Query 712 GCTACTTGGTTGCATCATATTCTTCGCTGGTTCTAAGCTCTATGTCAAGGTTAAAGCTAG 771
| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 661 GTTACTTGGTTGCATCATATTCTTCGCTGGTTCTAAGCTTTATGTCAAAGTTAAAGCTAG 720
Query 772 TGGCAGTCCCATTCACAGCATAACTCGTGTCATTGTTGTCGCGATCAAGAAGAGGCGGTT 831
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 721 TGGCAGTCCCATTCACAGCATAACTCGTGTCATTGTTGTCGCCATCAAGAAGAGGCGGTT 780
Query 832 AAAGCCCGTTGGGCCTAACGAGCTTTACAACTACATC-GCCAGTGATTTCAAGAACTCGA 890
||||||||||||| ||||||||||||||||||||||| | || ||||||||||||||||
Sbjct 781 AAAGCCCGTTGGGTCTAACGAGCTTTACAACTACATCGGGAAG-GATTTCAAGAACTCGA 839
Query 891 AATTGGGCCATACAGAGCAGTTCAGGTTTCTTGACAAATCGGCAATCCAAACACAAGACG 950
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 840 AACTGGGCCATACAGAGCAGTTCAGGTTTCTTGACAAATCGGCAATCCAAACACAAGATG 899
Query 951 ACAAGCTGAACAAAGATGGGTCGCCGGTGGATGCATGGAAACTCTGCAGTATGCAACAAG 1010
||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 900 ACAAGTTGAACAAAGATGGGTCGCCGGTGGATCCATGGAAACTTTGCAGTATGCAACAAG 959
Query 1011 TGGAGGAAGTTAAATGCGTGATCCGGGTGCTTCCGGTTTGGCTCTCGGCCGCCTTATTCT 1070
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 960 TGGAGGAAGTGAAATGCGTGATCCGGGTGCTTCCGGTTTGGCTCCCGGCCGCCTTATTCT 1019
Query 1071 ACCTAGCTTACATTCAACAAACAACCTACACAATCTTTCAGTCTCTTCAATCCGATAGAC 1130
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1020 ACCTAGCTTACATTCAACAAACAACCTACACAATATTTCAGTCTCTTCAATCCGATAGAC 1079
Query 1131 GCCTTGGTCCAGGAAGTTTCCAGATCCCGGCCG-GTTCTTATACCGTCTTCCTAATGCTT 1189
||||||| ||||||||||||||||||| |||| | |||||||||||||| ||||||||
Sbjct 1080 ACCTTGGTTCAGGAAGTTTCCAGATCCCAGCCGCG-ACTTATACCGTCTTCTTAATGCTT 1138
Query 1190 GGAATGACGATATTCATACCTATCTATGACCGCGTCCTTGTACCTTTCCT-TAGAAAGTA 1248
|||||||| ||||||||||| |||||||||||||||||||||||||| | |||||||||
Sbjct 1139 GGAATGACAATATTCATACCAATCTATGACCGCGTCCTTGTACCTTT-ATCTAGAAAGTA 1197
Query 1249 TACAGGCAGAGACGGCGGTATCACACAACTGCAGAGAGTTGGAGCAGGAC-TGTTTCTAT 1307
|||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1198 TACAGGCAAAGACGGCGGTATCACACAACTGCAGAGAGTTGGAGCAGG-CATGTTTCTAT 1256
Query 1308 GCATCACAAGTATGATGGTGTCTGCAATTGTAGAACAATACAGAAGAAAGGTAGCTCTCA 1367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 GCATCACAAGTATGATGGTGTCTGCAATTGTAGAACAATACAGAAGAAAGGTAGCTCTCA 1316
Query 1368 CAAAACCGACGCTAGGGTTGGCCCCAAGAAAAGGCGCAATCTCTTCGATGTCCGGTATGT 1427
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 1317 CAAAACCGACGCTAGGGTTTGCCCCAAGAAAAGGCGCAATCTCTTCAATGTCCGGTATGT 1376
Query 1428 GGTTGATTCCTCAGCTAGTGCTAATGGGTATCGCGGACGCCCTCGCTGGAGTTGGACAAA 1487
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1377 GGTTGATTCCTCAGCTAGTGCTAATGGGTATCGCGGACGCCCTTGCTGGAGTTGGACAAA 1436
Query 1488 TGGAGTTTTACTACAAACAGTTTCCAGAGAACATGCGAAGTTTTGCTGGTTCTCTGTATT 1547
|||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 1437 TGGAGTTTTATTACAAACAGTTTCCAGAGAACATGAGAAGTTTTGCTGGTTCCCTGTATT 1496
Query 1548 ATTGTGGAATCGGATTGGCGAGTTACCTCAGCACCTTTTTGTTATCGGCGGTACACGATA 1607
|||| ||||| |||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 1497 ATTGCGGAATTGGATTGGCGAGTTACCTCGGCACCTTTTTGTTATCGGCGGTGCACGATA 1556
Query 1608 CCACAGAGGGATTTTCAGGAGGAAGTTGGCTTCCGGAAGATTTAAACAAGGGAAGATTGG 1667
| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1557 CGACAGAGGGATTTTCGGGAGGAAGCTGGCTTCCGGAAGATTTAAACAAGGGAAGATTGG 1616
Query 1668 AGTATTTCTACTTCTTGGTTGCTGGTATGATGACTCTAAACTTGGCCTATTTCTTGTTGG 1727
|||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1617 AGTACTTCTACTTCTTGGTTGCTGGTATTATGACTCTAAACTTTGCCTATTTCTTGTTGG 1676
Query 1728 TCTCACATTGGTACCGTTACAAAGATGTTGTGGCCAAGGACAAGGACATGGACAAGACTT 1787
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1677 TCTCACATTGGTACCGTTACAAAGATGTTGTGGCCAAGGACAAGGACATGGACAAGTCTT 1736
Query 1788 CTG-CTGAGTTTGATAAGGTGTCAGTGTAATAAAGATCTTT-CCTTTGACTCTTTGGTTT 1845
||| | ||||||||||||||||||||||||||||||||| | |||| ||||||||||| |
Sbjct 1737 CTGAC-GAGTTTGATAAGGTGTCAGTGTAATAAAGATCTGTACCTT-GACTCTTTGGTAT 1794
Query 1846 AGGG----G-----CTTTGAGACAATAAAAATACAACCTTTGAACAAAACATTACATACA 1896
|||| | |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1795 AGGGCTTTGAGTTGCTTTGAGACAATAAAA-TACAACCTTTGAACAAAACATTACATACA 1853
Query 1897 AAATACAATGTAAAATGTTTAT-ATATGTAAA-GAACCATAGCTTCCGT 1943
|| ||||||||||||||||| | |||| |||| | ||||||||||||||
Sbjct 1854 AA-TACAATGTAAAATGTTTTTTATATATAAAAGGACCATAGCTTCCGT 1901
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73018999665
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5