BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18890.1
Length=2568
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920833 jgi|Araly1|920833|scaffold_102114.1 2769 0.0
Ahg476611 jgi|Araly1|476611|fgenesh2_kg.2__1741__AT1G74740.1 1604 0.0
Ahg472112 jgi|Araly1|472112|fgenesh2_kg.1__2066__AT1G18880.1 909 0.0
> Ahg920833 jgi|Araly1|920833|scaffold_102114.1
Length=1669
Score = 2769 bits (1499), Expect = 0.0
Identities = 1621/1679 (97%), Gaps = 11/1679 (1%)
Strand=Plus/Plus
Query 207 CTGAGTTTCTTAACTCAGCCATGGGTAACTGTAACGCCTGTGTAAGGCCAGACTCAAAAG 266
|||||||||||||||| |||||||||||||||||||||||||||||| | || |
Sbjct 1 CTGAGTTTCTTAACTCGGCCATGGGTAACTGTAACGCCTGTGTAAGG-C---CT-----G 51
Query 267 AATCAAAACCATCTTCAAAGCCGAAAAAACCCAATCGAGATCGGAAATTAAACCCATTCG 326
| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 52 ACTCAAAACCATCTCCGAAGCCGAAAAAACCCAATCGAGATCGGAAATTAAACCCATTCG 111
Query 327 CCGGAGATTTCACCAGATCCCCAGCTCCAATACGTGTTCTCAAAGATGTAATCCCTATGA 386
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 112 CCGGAGATTTCACCAGATCCCCTGCTCCAATACGTGTTCTCAAAGATGTAATCCCTATGA 171
Query 387 GCAATCAAACTCAGATCAGCGACAAATACATCTTAGGTCGTGAATTAGGTCGAGGCGAAT 446
|| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 172 GCCATCAAACTCAGATCAGCGACAAATACATCTTAGGTCGAGAATTAGGTCGCGGCGAAT 231
Query 447 TCGGAATCACTTACCTCTGTACTGATCGTGAAACCCACGAAGCTTTAGCTTGCAAATCGA 506
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 232 TCGGAATCACTTACCTCTGCACTGATCGTGAAACCCACGAAGCTTTAGCTTGCAAATCGA 291
Query 507 TTTCAAAGC-GAAAGCTTCGAACAGCTGTCGATATCGAAGACGTTCGTCGTGAGGTAGCG 565
||||||| | |||| |||||||| || ||||||||||||||||||||||||||||| |||
Sbjct 292 TTTCAAAACGGAAA-CTTCGAACCGCCGTCGATATCGAAGACGTTCGTCGTGAGGTCGCG 350
Query 566 ATTATGTCTACTTTACCTGAGCATCCAAACGTAGTTAAGCTTAAGGCTAGTTATGAGGAT 625
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 351 ATTATGTCTACTTTACCTGAGCACCCAAACGTAGTTAAGCTTAAGGCTAGTTATGAGGAC 410
Query 626 AACGAGAACGTGCATCTGGTTATGGAGCTTTGTGAAGGAGGTGAGCTTTTTGATCGGATT 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 AACGAGAACGTGCATCTGGTTATGGAGCTTTGTGAAGGAGGTGAGCTTTTTGATCGGATT 470
Query 686 GTTGCTAGAGGACATTACACGGAGCGTGCTGCTGCAGCTGTTGCGAGAACGATTGCTGAG 745
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 GTTGCCAGAGGACATTACACGGAGCGTGCTGCTGCAGCTGTTGCGAGAACGATTGCTGAG 530
Query 746 GTTGTGATGATGTGTCACTCTAATGGAGTTATGCATCGAGATTTGAAACCTGAGAATTTC 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 GTTGTGATGATGTGTCACTCTAATGGAGTTATGCATCGAGATTTGAAACCTGAGAATTTC 590
Query 806 TTGTTTGCTAATAAAAAGGAGAATTCTCCACTAAAGGCTATTGATTTTGGCTTGTCTGTG 865
||||||||||| || ||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 591 TTGTTTGCTAACAAGAAGGAGAATTCTCCACTAAAGGCCATTGATTTCGGCTTGTCTGTG 650
Query 866 TTCTTCAAACCTGGAGATAAGTTTACAGAGATTGTAGGAAGTCCGTATTATATGGCTCCA 925
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 TTCTTTAAACCTGGAGATAAGTTTACAGAGATTGTAGGAAGTCCGTATTATATGGCTCCA 710
Query 926 GAAGTGTTGAAGAGAGATTATGGACCAGGGGTTGATGTGTGGAGTGCCGGAGTTATTATC 985
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 711 GAAGTGTTGAAGAGAGATTATGGACCAGAGGTTGATGTGTGGAGTGCAGGAGTTATTATC 770
Query 986 TATATCTTGCTCTGTGGTGTTCCTCCGTTTTGGGCTGAGACTGAACAAGGTGTTGCTCTT 1045
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 TACATCTTGCTCTGTGGTGTTCCTCCGTTTTGGGCTGAGACTGAACAAGGTGTTGCTCTT 830
Query 1046 GCGATCTTGCGGGGAGTTCTTGATTTTAAGAGAGACCCTTGGCCTCAGATATCAGAGAGT 1105
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 GCGATCTTGCGGGGAGTTCTTGATTTTAAGAGAGACCCTTGGCCTCAGATATCAGAGAGC 890
Query 1106 GCCAAGAGCCTTGTGAAGCAGATGTTGGATCCTGATCCGACTAAGCGGTTAACTGCTCAG 1165
|||||||| ||||||||||||||||||||||| ||||||| || ||||||||||||||||
Sbjct 891 GCCAAGAGTCTTGTGAAGCAGATGTTGGATCCGGATCCGAGTATGCGGTTAACTGCTCAG 950
Query 1166 CAAGTGTTAGCTCACCCATGGATACAGAATGCAAAGAAAGCTCCCAATGTTCCTTTAGGA 1225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 951 CAAGTGTTAGCTCACCCATGGATACAGAATGCAAAGAAAGCTCCCAATGTTCCTTTAGGA 1010
Query 1226 GATATAGTCAGATCTAGGTTGAAGCAGTTCTCTATGATGAACAGATTCAAAAAGAAAGTT 1285
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1011 GATATAGTCAGATCGAGGTTGAAGCAGTTCTCTATGATGAACAGATTCAAAAAGAAAGTT 1070
Query 1286 CTTCGTGTAATTGCGGAGCACTTGTCTATTCAAGAGGTTGAAGTGATAAAGAACATGTTC 1345
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1071 CTTCGTGTAATCGCGGAGCACTTGTCTATTCAAGAGGTTGAAGTGATCAAGAACATGTTC 1130
Query 1346 TCACTGATGGATGATGACAAGGATGGTAAAATAACTTACCCGGAACTCAAAGCTGGGCTT 1405
||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1131 TCACTTATGGATGATGATAAGGATGGTAAAATAACTTACCCAGAACTCAAAGCTGGGCTT 1190
Query 1406 CAGAAGGTCGGTTCACAACTTGGTGAACCAGAGATCAAAATGTTGATGGAAGTGGCGGAT 1465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 CAGAAGGTCGGTTCACAACTTGGTGAACCAGAGATCAAAATGTTGATGGAAGTGGCGGAT 1250
Query 1466 GTCGATGGAAATGGGTTTCTGGATTATGGAGAGTTTGTAGCTGTGATAATTCACTTGCAG 1525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1251 GTCGATGGAAATGGGTTTCTGGATTATGGAGAGTTTGTAGCTGTGATAATTCACTTGCAG 1310
Query 1526 AAGATAGAGAATGATGAACTTTTCAAACTAGCTTTTATGTTTTTCGACAAAGATGGAAGT 1585
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1311 AAGATAGAGAATGATGAACTTTTCAAACTAGCTTTTATGTTCTTCGACAAAGATGGAAGT 1370
Query 1586 ACATACATTGAACTTGATGAGCTACGGGAAGCTTTAGCGGATGAGTTAGGCGAGCCAGAC 1645
|||||||||||||||||||||||||| ||||||||||| ||||||||||| || ||||||
Sbjct 1371 ACATACATTGAACTTGATGAGCTACGAGAAGCTTTAGCTGATGAGTTAGGGGAACCAGAC 1430
Query 1646 GCCAGTGTTCTAAGCGACATCATGCGTGAAGTTGACACTGACAAGGACGGACGTATAAAC 1705
||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1431 ACCAGTGTTCTAAGCGACATTATGCGTGAAGTTGACACTGACAAGGACGGGCGTATAAAC 1490
Query 1706 TATGATGAGTTTGTGACGATGATGAAAGCTGGAACTGACTGGAGAAAGGCATCGAGACAA 1765
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1491 TATGATGAGTTTGTGGCGATGATGAAAGCTGGAACTGACTGGAGAAAGGCATCAAGACAA 1550
Query 1766 TATTCAAGAGAGAGGTTCAAAAGCTTAAGCATTAACTTGATGAAAGATGGGTCATTGCAT 1825
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1551 TATTCAAGAGAGAGGTTCAAAAGCTTAAGCCTTAACTTGATGAAAGATGGGTCATTGCAT 1610
Query 1826 CTCCATGACGCTCTCACTGGACAAACTGTTCCTGTTTAAATTTATTCGTTATCACCAAA 1884
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1611 CTCCATGACGCTCTCACTGGACAAACTGTTCCTGTTTAATTTTATTCGTTATCACCAAA 1669
> Ahg476611 jgi|Araly1|476611|fgenesh2_kg.2__1741__AT1G74740.1
Length=2001
Score = 1604 bits (868), Expect = 0.0
Identities = 1322/1541 (86%), Gaps = 32/1541 (2%)
Strand=Plus/Plus
Query 373 TGTAATCCCTATGAGCAATCAAACTCAGATCAGCGACAAATACATCTTAGGTCGTGAATT 432
||| |||||||||||| ||||| |||||||||||||||| || ||| | || || ||| |
Sbjct 270 TGTGATCCCTATGAGCCATCAATCTCAGATCAGCGACAAGTATATCCTCGGACGAGAACT 329
Query 433 AGGTCGAGGCGAATTCGGAATCACTTACCTCTGTACTGATC-GTGAAACCCACGAAGCTT 491
||||| ||||||||||||||||| || || ||||| || | | || || | |||||||
Sbjct 330 CGGTCGCGGCGAATTCGGAATCACCTATCTTTGTACAGA-CAGAGAGACTCGTGAAGCTT 388
Query 492 TAGCTTGCAAATCGATTTCAAAGCGAAAGCTTCGAACAGCTGTCGATATCGAAGACGTTC 551
||||||||||||| || || ||| ||||||| ||||| || ||||| | |||||||| |
Sbjct 389 TAGCTTGCAAATCAATCTCCAAGAGAAAGCTCCGAACCGCCGTCGACGTGGAAGACGTCC 448
Query 552 GTCGTGAGGT-AGCGATTATGTCTACTTTACCTGAGCATCCAAACGTAGTTAAGCTTAAG 610
| ||||| || | |||| ||||| ||| | || || ||||||||||| || || || ||
Sbjct 449 GCCGTGAAGTCA-CGATCATGTCAACTCTCCCGGAACATCCAAACGTTGTGAAACTCAAA 507
Query 611 GCTAGTTATGAGGATAACGAGAACGTGCATCTGGTTATGGAGCTTTGTGAAGGAGGTGAG 670
|| | ||||||||| ||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 508 GCGACTTATGAGGACAACGAGAACGTGCATCTTGTGATGGAGCTTTGTGAAGGAGGTGAG 567
Query 671 CTTTTTGATCGGATTGTTGCTAGAGGACATTACACGGAGCGTGCTGCTGC-AGCTGTTGC 729
|||||||||||||||||||| ||||||||||| || |||||||| || || | | || ||
Sbjct 568 CTTTTTGATCGGATTGTTGCGAGAGGACATTATACAGAGCGTGCGGCGGCTACC-GTCGC 626
Query 730 GAGAACGATTGCTGAGGTTGTGATGATGTGTCAC-TCTAATGGAGTTATGCATCGAGATT 788
||| ||||| || |||||||||| ||||||||| || ||||| ||||||||| ||||||
Sbjct 627 GAGGACGATCGCGGAGGTTGTGAGGATGTGTCATGTC-AATGGTGTTATGCATAGAGATT 685
Query 789 TGAAACCTGAGAATTTCTTGTTTGCTAATAAAAAGGAGAATTCTCCACTAAAGGCTATTG 848
|||| ||||||||||||||||||||||| || |||||||||||| |||| ||||||||||
Sbjct 686 TGAAGCCTGAGAATTTCTTGTTTGCTAACAAGAAGGAGAATTCTGCACTTAAGGCTATTG 745
Query 849 ATTTTGGCTTGTCTGTGTTCTTCAAACCTGGAGATAAGTTTACAGAGATTGTAGGAAGTC 908
||||||| || |||||| |||| |||||||| || | |||||||||||||||||||||||
Sbjct 746 ATTTTGGTTTATCTGTGCTCTTTAAACCTGGGGAGAGGTTTACAGAGATTGTAGGAAGTC 805
Query 909 CGTATTATATGGCTCCAGAAGTGTTGAAGAGAGATTATGGACCAGGGGTTGATGTGTGGA 968
| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 806 CTTATTATATGGCTCCAGAAGTGTTGAAGAGAAATTATGGACCAGAGGTTGATGTGTGGA 865
Query 969 GTGCCGGAGTTATTATCTATATCTTGCTCTGTGGTGTTCCTCCGTTT-TGGGCTGAGACT 1027
|||| |||||||| |||| ||||||||||||||||||||||| ||| ||||| ||||||
Sbjct 866 GTGCTGGAGTTATCCTCTACATCTTGCTCTGTGGTGTTCCTCC-TTTCTGGGCAGAGACT 924
Query 1028 GAACAAGGTGTTGCTCTTGCGATCTTGCGGGGAGTTCTTGATTTTAAGAGAGACCCTTGG 1087
||||||||||| |||||||| |||||| ||||||||||||||||||||||||| ||||||
Sbjct 925 GAACAAGGTGTGGCTCTTGCAATCTTGAGGGGAGTTCTTGATTTTAAGAGAGATCCTTGG 984
Query 1088 CCTCAGATATCAGAGAGTGCCAAGAGCCTTGTGAAGCAGATGTTGGATCCTGAT-CCGAC 1146
| |||||||||||||| || ||||||||||| |||||||||||||| |||||| || ||
Sbjct 985 TCGCAGATATCAGAGAGCGCAAAGAGCCTTGTTAAGCAGATGTTGGAACCTGATGCC-AC 1043
Query 1147 TAAGCGGTTAACTGCTCAGCAAGTG-TTAGCTCACCCATGGATACAGAATGCAAAGAAAG 1205
|||||| || |||||||||||||| || | |||||| |||||||| ||||| |||||||
Sbjct 1044 TAAGCGTTTGACTGCTCAGCAAGTTCTT-GATCACCCTTGGATACAAAATGCTAAGAAAG 1102
Query 1206 CTCCCAATGTTCCTTTAGGAGATATAGTCAGATCTAGGTTGAAGCAGTTCTCTATGATGA 1265
|||| |||||||||||||| ||||| || || || || |||||||| ||||| |||||||
Sbjct 1103 CTCCAAATGTTCCTTTAGGGGATATTGTTAGGTCAAGATTGAAGCAATTCTCCATGATGA 1162
Query 1266 ACAGATTCAAAAAGAAAGTTCTTCGTGTAATTGCGGAGCACTTGTCTATTCAAGAGGTTG 1325
| ||||| |||||||||| ||| ||||| || ||||| ||||||||| ||||||| ||||
Sbjct 1163 ATAGATTGAAAAAGAAAGCTCTGCGTGTTATCGCGGAACACTTGTCTCTTCAAGAAGTTG 1222
Query 1326 AAGTGATAAAGAA-CATGTTCT-CACTGATGGATGATGACAAGGATGGTAAAATAACTTA 1383
||||||| | ||| |||||| | ||||||||||||||||||| || ||||||||| | ||
Sbjct 1223 AAGTGATCA-GAAACATGTT-TACACTGATGGATGATGACAACGACGGTAAAATATCATA 1280
Query 1384 CCCGGAACTCAAAGCTGGGCTTCAGAAGGTCGGTTCACAACTTGGTGAACCAGAGATCAA 1443
| ||||||| |||||| || | ||| |||||||||||||| |||||||||||||||||
Sbjct 1281 TCTAGAACTCAGAGCTGGACTCCGGAAAGTCGGTTCACAACTGGGTGAACCAGAGATCAA 1340
Query 1444 AATGTTGATGGAAGTGGCGGATGTCGATGGAAATGGGTTTCTGGATTATGGAGAGTTTGT 1503
| |||||||||||||||||||||| | |||||||| | || || ||||||||||||||
Sbjct 1341 ATTGTTGATGGAAGTGGCGGATGTTAACGGAAATGGATGCCTAGACTATGGAGAGTTTGT 1400
Query 1504 AGCTGTGATAATTCACTTGCAGAAGATAGAGAATGATGAACTTTTCAAACTAGCTTTTAT 1563
||| ||||||||||||||||||||||| ||||||||||| | ||||| || |||||||||
Sbjct 1401 AGCAGTGATAATTCACTTGCAGAAGATGGAGAATGATGAGCATTTCAGACAAGCTTTTAT 1460
Query 1564 GTT-TTTCGACAAAGATGGAAGTACATACATTGAA-CTTGATGAGCTACGGGAAGCTTTA 1621
||| ||| ||||||||||||||| |||||| ||| | || || ||||| |||||||||
Sbjct 1461 GTTCTTT-GACAAAGATGGAAGTGGATACATCGAATCA-GAAGAACTACGTGAAGCTTTA 1518
Query 1622 GCGGATGAGTTAGGCGAGCCAGACGCCAGTGTTCTAAGCGACATCATGCGTGAAGTTGAC 1681
| || |||||||| || |||||| ||| ||| ||| ||| || ||||||||||| |||
Sbjct 1519 ACCGACGAGTTAGGTGAACCAGACAACAGCGTTATAATCGATATAATGCGTGAAGTCGAC 1578
Query 1682 ACTGACAAGGACGGACGTATAAACTATGATGAGTTTGTGACGATGATGAAAGCTGGAACT 1741
||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||
Sbjct 1579 ACTGACAAGGACGGACGAATAAACTACGATGAGTTTGTGGTGATGATGAAAGCTGGAACT 1638
Query 1742 GACTGGAGAAAGGCATCGAGACAATATTCAAGAGAGAGGTTCAAAAGCTTAAGCATT-AA 1800
|| |||||||||||||| |||||||| |||||||||||||| |||||||||||| || ||
Sbjct 1639 GATTGGAGAAAGGCATCAAGACAATACTCAAGAGAGAGGTTTAAAAGCTTAAGC-TTGAA 1697
Query 1801 CTTGATGAAAGATGGGTCATTGCATCTCCATGACGCTCTCACTGGACAAACTGTTCCTGT 1860
||||||||||||||||||| ||||||| || ||||| |||||||||||| || || | ||
Sbjct 1698 CTTGATGAAAGATGGGTCAATGCATCTACACGACGCACTCACTGGACAATCTATTGCAGT 1757
Query 1861 TTAAA-TTTA---TTCGTT-ATCACCAAAAACAGA-GCAAT 1895
|| | |||| || ||| ||||| |||| |||| |||||
Sbjct 1758 TTGATCTTTACACTT-GTTTATCACGAAAA-CAGAAGCAAT 1796
> Ahg472112 jgi|Araly1|472112|fgenesh2_kg.1__2066__AT1G18880.1
Length=1901
Score = 909 bits (492), Expect = 0.0
Identities = 579/618 (94%), Gaps = 17/618 (3%)
Strand=Plus/Minus
Query 1964 ACGGAAGCTATGGTTC-TTTACATAT-ATAAACATTTTACATTGTATTTTGTATGTAATG 2021
|||||||||||||| | |||| |||| | ||||||||||||||||| |||||||||||||
Sbjct 1901 ACGGAAGCTATGGTCCTTTTATATATAAAAAACATTTTACATTGTA-TTTGTATGTAATG 1843
Query 2022 TTTTGTTCAAAGGTTGTATTTTTATTGTCTCAAAG-----C----CCCTAAACCAAAGAG 2072
|||||||||||||||||| |||||||||||||||| | ||||| |||||||||
Sbjct 1842 TTTTGTTCAAAGGTTGTA-TTTTATTGTCTCAAAGCAACTCAAAGCCCTATACCAAAGAG 1784
Query 2073 TCAAAGG-AAAGATCTTTATTACACTGACACCTTATCAAACTCAG-CAGAAGTCTTGTCC 2130
|| |||| | ||||||||||||||||||||||||||||||||| | |||||| |||||||
Sbjct 1783 TC-AAGGTACAGATCTTTATTACACTGACACCTTATCAAACTC-GTCAGAAGACTTGTCC 1726
Query 2131 ATGTCCTTGTCCTTGGCCACAACATCTTTGTAACGGTACCAATGTGAGACCAACAAGAAA 2190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1725 ATGTCCTTGTCCTTGGCCACAACATCTTTGTAACGGTACCAATGTGAGACCAACAAGAAA 1666
Query 2191 TAGGCCAAGTTTAGAGTCATCATACCAGCAACCAAGAAGTAGAAATACTCCAATCTTCCC 2250
||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1665 TAGGCAAAGTTTAGAGTCATAATACCAGCAACCAAGAAGTAGAAGTACTCCAATCTTCCC 1606
Query 2251 TTGTTTAAATCTTCCGGAAGCCAACTTCCTCCTGAAAATCCCTCTGTGGTATCGTGTACC 2310
||||||||||||||||||||||| |||||||| |||||||||||||| |||||||| |||
Sbjct 1605 TTGTTTAAATCTTCCGGAAGCCAGCTTCCTCCCGAAAATCCCTCTGTCGTATCGTGCACC 1546
Query 2311 GCCGATAACAAAAAGGTGCTGAGGTAACTCGCCAATCCGATTCCACAATAATACAGAGAA 2370
||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||| |||
Sbjct 1545 GCCGATAACAAAAAGGTGCCGAGGTAACTCGCCAATCCAATTCCGCAATAATACAGGGAA 1486
Query 2371 CCAGCAAAACTTCGCATGTTCTCTGGAAACTGTTTGTAGTAAAACTCCATTTGTCCAACT 2430
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1485 CCAGCAAAACTTCTCATGTTCTCTGGAAACTGTTTGTAATAAAACTCCATTTGTCCAACT 1426
Query 2431 CCAGCGAGGGCGTCCGCGATACCCATTAGCACTAGCTGAGGAATCAACCACATACCGGAC 2490
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1425 CCAGCAAGGGCGTCCGCGATACCCATTAGCACTAGCTGAGGAATCAACCACATACCGGAC 1366
Query 2491 ATCGAAGAGATTGCGCCTTTTCTTGGGGCCAACCCTAGCGTCGGTTTTGTGAGAGCTACC 2550
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1365 ATTGAAGAGATTGCGCCTTTTCTTGGGGCAAACCCTAGCGTCGGTTTTGTGAGAGCTACC 1306
Query 2551 TTTCTTCTGTATTGTTCT 2568
||||||||||||||||||
Sbjct 1305 TTTCTTCTGTATTGTTCT 1288
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96825402790
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5