BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18940.1
Length=1581
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312838 jgi|Araly1|312838|fgenesh1_pm.C_scaffold_1001618 2383 0.0
> Ahg312838 jgi|Araly1|312838|fgenesh1_pm.C_scaffold_1001618
Length=1581
Score = 2383 bits (1290), Expect = 0.0
Identities = 1486/1583 (94%), Gaps = 4/1583 (0%)
Strand=Plus/Plus
Query 1 ATGGCGACGGAGATTCTGAGAACGAAATGGATGGCGATGACGGCGAGTATATGGATCCAG 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGGCGACGGAGATTCTGAGAACGAAATGGATGGCGATGACAGCGAGTATATGGATCCAG 60
Query 61 TGTAGCGCAGGAGGTTCATACACCTTCGGAATCTACTCAGCGATCTTAAAGTCAACTCAA 120
|||| || ||||||||| |||||||| ||||||||||| || ||||||||||||||||||
Sbjct 61 TGTACCGAAGGAGGTTCCTACACCTTGGGAATCTACTCCGCCATCTTAAAGTCAACTCAA 120
Query 121 TCTTACGATCAATCAACCCTTGATACAGTCTCCGTCTTCAAAGACATTGGAGGTAACGTC 180
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 121 TCTTACGACCAATCAACCCTTGATACAGTCTCCGTCTTCAAAGACATTGGTGGTAACGTC 180
Query 181 GGAGTTTTATCGGGACTTGTATACACTGCAGCCACTTTCAATCGCCGTCGCCGTGATGGA 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 181 GGAGTTTTATCGGGACTTGTATACACTGCAGCTACTTTCAATCGCCGTCGCCGTGATGGA 240
Query 241 CGGGAACGTCGAGGAGGACCTTGGGTGGTGATTTTGATCGGAGCGATTTTGAATTTCACC 300
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 241 CGGGAACGTCGAGGAGGACCGTGGGTGGTGATTTTGATCGGAGCGATTTTGAACTTCACC 300
Query 301 GGTTATTTCCTAATGTGGGCTTCTGTTACCGGTTTAATTAAACGGCCTCCGGTTCCGGTC 360
|||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 301 GGTTATTTTCTAATGTGGGTTTCTGTTACCGGTTTAATTACACGGCCTCCGGTTCCGGTT 360
Query 361 ATGTGTCTATTTATGTTTATAGCTGCACAGTCTTTAACGTTTCTTAACACCGCCAATGTT 420
||||||||||||||||| ||||||||||||||||| |||||||||||||| || ||||||
Sbjct 361 ATGTGTCTATTTATGTTCATAGCTGCACAGTCTTTGACGTTTCTTAACACGGCAAATGTT 420
Query 421 GTGAGCTCCTTAGAGAATTTTGCTGACTATGGTGGCACTGCTGTTGGCATTATGAAGGGT 480
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 421 GTGAGCTCTTTAGAGAATTTTGCTGATTATGGTGGCACTGCTGTTGGCATTATGAAGGGT 480
Query 481 TTTGTTGGACTAAGCGGAGCAATGTTAATTCAGCTGTATGAAGTCGTATGTCCTGGAGAT 540
|||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 481 TTTGTTGGTCTAAGCGGAGCAATGTTAATTCAGCTATATGAAACCGTATGTCCTGGAGAT 540
Query 541 CCAAAGACTTTTATTCTTCTACTTGCAATTGTACCTTCACTTCTCTCTGTTTTGGTGATG 600
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 541 CCAAAGACTTTTATTCTTCTACTTGCAATAGTACCTTCACTTCTCTCTGTCTTGGTGATG 600
Query 601 CCTCTAGTCAGGGTATACAAGACAAGCACAGTGGATGAGAAGAAACATTTGGATGGTTTA 660
|||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 601 CCTCTAGTCAGGATATACAAGACAAGCACAGTCCATGAGAAGAAGCATTTGGATGGTTTA 660
Query 661 TCAACTTTGTCACTTATCATTGCAGCTTACCTTATGATTACTATTATTCTGAAGAGCACT 720
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 661 TCAGCTTTGTCGCTTATCATTGCAGCTTACCTTATGATTACTATTATTCTGAAGACCATT 720
Query 721 TTAAGTTTACCATCATGGGCCAATGCTGTCACACTTGCAGTTCTACTTGTTCTGCTTTCA 780
||||||||||||||| |||||||||| |||||||||||||||||||| ||| ||||| ||
Sbjct 721 TTAAGTTTACCATCAGGGGCCAATGCCGTCACACTTGCAGTTCTACTCGTTTTGCTTGCA 780
Query 781 TCGCCTCTACTAGTTGCGGTAAGAGCACACCG-GGACAGTATCGAGAAACCGTTGTCATC 839
|||||||||||||| ||||||||||||| ||| || |||| |||||||||||||||||||
Sbjct 781 TCGCCTCTACTAGTAGCGGTAAGAGCACGCCGAGG-CAGTGTCGAGAAACCGTTGTCATC 839
Query 840 TGTTTATTCTCCTTTGGTAGATAATCTGG-AAGCAACAACCTCTGGAGAGATTTTGATGC 898
| ||||||||||||||||||| || |||| || ||| ||||||||||||| || || ||
Sbjct 840 TCTTTATTCTCCTTTGGTAGACAAACTGGAAACCAA-AACCTCTGGAGAGGTTGTGGTGT 898
Query 899 TAGATGAAGACAAAAGCTTGAATCTTTTACAAGCTATGTGTAATGTAGACTTTTGGTTGT 958
||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||
Sbjct 899 TAGATGAAGACAAAAGCTTGAATGTTTTACAAGCTATGCGTAATGTAGACTTCTGGTTGT 958
Query 959 TGTTTCTTGCAATGATATGTGGAATGGGATCCGGGATTTCGACGATAAATAACATCAGAC 1018
|||||||||| |||||||||||||||||||| || |||||||||||||| || |||||||
Sbjct 959 TGTTTCTTGCCATGATATGTGGAATGGGATCTGGAATTTCGACGATAAACAATATCAGAC 1018
Query 1019 AAATAGGTGAGTCTCTTCGATACACTAGCGTTGAGATAAACTCATTGTTGGCTTTATGGA 1078
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1019 AAATAGGTGAGTCTCTTCGATACACTAGCGTCGAGATAAACTCATTGTTAGCTTTATGGA 1078
Query 1079 ATATATGGAACTTTATTGGTCGGTTTGGAGGTGGTTATGTCTCGGATTGGTTGCTGCACA 1138
||||||||||||||||||||| ||||||| ||||||| |||||||| ||||| ||||
Sbjct 1079 GTATATGGAACTTTATTGGTCGTTTTGGAGCCGGTTATGCCTCGGATTTATTGCTACACA 1138
Query 1139 GAAAAGGATGGCCACGTCCGTTGCTAATGGCTACAACTCTTGGAACTATGACCATAGGTC 1198
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1139 GAAAAGGATGGCCGCGTCCGTTGCTAATGGCTACAACTCTTGGAACCATGACCATAGGTC 1198
Query 1199 ATCTAATCATAGCCTCTGGTTTTCAAGGAAATCTTTACCCCGGTTCGATTATCGTAGGCA 1258
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1199 ATCTAATCATAGCCTCTGGCTTTCAAGGAAATCTTTACCCCGGTTCGATAATCGTAGGCA 1258
Query 1259 TTTGTTATGGCTCACAATGGTCGTTAATGCCAACAATTACATCAGAACTATTTGGAGTTA 1318
||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||
Sbjct 1259 TTTGTTATGGCTCACAATGGTCGTTAATGCCAACAATTACATCAGAACTGTTCGGGGTTA 1318
Query 1319 AGCACATGGGAACAATCTACAACACCATTTCAATTGCTAGTCCTATGGGTTCATATATCT 1378
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1319 AGCACATGGGCACAATCTACAACACCATTTCGATTGCTAGTCCTATGGGTTCATATATCT 1378
Query 1379 TCTCTGTAAGATTGATTGGATATATCTATGATCGCACCATTATCGGAGAAGGTAACACGT 1438
||||||||||||| ||||| ||||||||||||| ||||||| ||| |||||||||||||
Sbjct 1379 TCTCTGTAAGATTAATTGGGTATATCTATGATCATACCATTACCGGGGAAGGTAACACGT 1438
Query 1439 GTTACGGTCCTCATTGTTTCCGATTGGCATATGTGGTAATTGCATCTGTGGCTTTCCTCG 1498
|||||||||||||||||||||||||||||| |||| | |||||||||||||||||||| |
Sbjct 1439 GTTACGGTCCTCATTGTTTCCGATTGGCATTTGTGATCATTGCATCTGTGGCTTTCCTAG 1498
Query 1499 GATTTCTTGTCTCATGTGTGTTGGTTTTTCGGACAAAGACGATATATCGACAGATCTTTG 1558
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 1499 GATTTCTTGTCTCATGTGTGTTGGTTTTTCGGACAAAGACGCTATATCGACAGATCTTCG 1558
Query 1559 AGAAGATATTGCATCGTCGATAA 1581
|||||| |||||||||||||||
Sbjct 1559 AGAAGAGGTTGCATCGTCGATAA 1581
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59230330975
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5