BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18950.1
Length=2731
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472118 jgi|Araly1|472118|fgenesh2_kg.1__2072__AT1G18950.1 4010 0.0
> Ahg472118 jgi|Araly1|472118|fgenesh2_kg.1__2072__AT1G18950.1
Length=2741
Score = 4010 bits (2171), Expect = 0.0
Identities = 2593/2777 (93%), Gaps = 107/2777 (4%)
Strand=Plus/Plus
Query 19 CTGATTAACCGATTTCGATTTCCCCACAATGCCAAAAGGGTTTTGATTCTCTCTTCCTAA 78
||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 1 CTGATTAACCGATTTCGATTTCCCCACAATGCCTTAAGGGTTTTGATTCTCTCTCCCTAA 60
Query 79 AAATCTCAAATTTACACCCAGaaaaaaaCCCTAATTTCGATCTTTAATCTCT-A-CGCTC 136
||| || | || | ||| |||||||||||| ||||||| |||||| | | |||
Sbjct 61 AAA--TC-----T-CA---A-AAATAAACCCTAATTTAGATCTTTGATCTCTAATC-CTC 107
Query 137 TCTAATGGGTTCCTCCTCCGATATCGTCCCTGACCGATCTCCAGCTGACGATGTAGCTCC 196
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 108 TTTAATGGGTTCCTCCTCCGATATCGTCCCTGACCGATCTCCAGCCGACGATGTAGCTCC 167
Query 197 GGTTACAGATACCAAAATTCCAAAGGAGGAGCCTTTGACGCTTAGGAGAACGCGTCCTTC 256
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 168 GGTTACAGATACCAAAATTCCAAAGGAGGAGCCTTCGACGCTTAGGAGAACGCGTCCTTC 227
Query 257 TCGGGCTTGTACTGTTAGGGCTCAGCAGCGGCTTCAAGAGCTTCAAGCGGCGGAGAGAAA 316
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 228 TCGGGCTTGTACTGTTAGGGCACAGCAGCGGCTTCAGGAGCTTCAAGCGGCGGAGAGAAA 287
Query 317 GCTTAAGCCGCCTAAGAAGGAGTATAAACGAGAGCAGCATCGACGGAGAGAAGAGGTGGT 376
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 288 GCTTAAGCCGCCTAAGAAGGAGTTTAAACGAGAGCAGCATCGACGGAGAGAAGAGGTTGT 347
Query 377 GGAGGAAGATGAGGAT-TCGGA-G--GATGACGATCAAGAGGATGAAGAGAACGACGGAG 432
|||||||||||||||| | ||| | ||||| ||||||||| | |||||| ||||||
Sbjct 348 GGAGGAAGATGAGGATGT-GGATGATGATGATGATCAAGAGCAAGAAGAG---GACGGAA 403
Query 433 ATGATGAGAGTAATCCGAAGCAATGCGTTGCTGGAGGAAGTTCTACTAAAATCATTACTT 492
||||||||||||| ||| ||| | ||||||||||||||||||| |||||||||||||||
Sbjct 404 ATGATGAGAGTAAGCCGCAGC-A--CGTTGCTGGAGGAAGTTCTGCTAAAATCATTACTT 460
Query 493 CTCTTGTTCCGCCACCGGAACCTTCACAGATGCCGCGGTGGAATCTTCGTTCTATGTGGG 552
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 461 CTCTTGTTCCGCCACCGGAACCTTCACAGATGCCGCGATGGAATCTTCGTTCTATGTGGG 520
Query 553 AACTTGCTTCTGTGCTCAATTTCTTGCATGTATTTAGACCGCTTTTGAAAATCAATGCGG 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 521 AACTTGCTTCTGTGCTCAATTTCTTGCATGTATTTAGACCGCTTTTGAAAATCAATGCGG 580
Query 613 AGTTTTCAGCGGAGGAGTTTGAAACGGCTTTGCTTACTCCAAACGATACTTTAAGTGATA 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 581 AGTTTTCAGCGGAGGAGTTTGAAACGGCTTTGCTTACTCCAAACGATACTTTAAGTGATA 640
Query 673 TTCACATTCCTCTGCTAAAGGCCATTCCGCCTGTAACTCGAATGGCTCTCACCCGTGATA 732
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 641 TTCATATTCCTCTGCTAAAGGCCATTCCTCCTGTAACTCGAATGGCTCTCACCCGTGATA 700
Query 733 CCTGGGTAACTGTCCTGTGCAGAAAAATAAGAGATTGCTGGCATTGGGTTGCAGAAGGGG 792
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 701 CCTGGGTAACTGTCCTGTGCAGAAAAATAAGAGATTGCTGGCATTGGGTCGCAGAAGGGG 760
Query 793 ACCTTCCTATTGTTGCCTTGCAAGGGCGGGAGATTGAAGTTTACAAAAATCTTGATCCAG 852
|||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 761 ACCTCCCTATTGTTGCCTCGCAAGGGCGGGAGATTGAAGCGTACAAAAATCTTGATCCAG 820
Query 853 CCATCCGTGTGGTGATTTTAAAAGCGTTATGTGATATTCGTGTTGAGCAAGAGGAT-ATC 911
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 821 CCATCCGTGTGGTGATTTTAAAAGCGTTATGTGATATTCGTGTTGAGCAAGAG-ATTATC 879
Query 912 AGGAGCTACATTGACAACTCTCTTAAAACTGGCGTTCACCTGTCAGTTTTTCGCAAAGAT 971
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 880 AGGAGCTACATTGACAACTCTCTTAAAACTGGTGTTCACCTGTCAGTTTTTCGCAAAGAT 939
Query 972 CGTGTTGGGGGTGATTCACATGGAGTTAATTTTTGGTATGAGGAAGATCCCTTAATTGGT 1031
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 940 CGTGTTGGGGGTGATTCACATGGAGTTAATTTTTGGTATGAGGATGATCCCTTAATTGGT 999
Query 1032 CACCGTTTATATCGGGAAATAAGGAAAGCAGAGGTGTTGAAGGTCAAAACAAAGGGTTCC 1091
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1000 CACCGTCTATATCGGGAAATAAGGAAAGCAGAGGTGTTGAAGGTCAAAACAAAGGGTTCC 1059
Query 1092 AAGATTCTTCCTAACATAACATACCAATGGGAAACTGTTGCCACTAATTTCGATGAATTC 1151
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1060 AAGATTCTTCCTAACATAACATACCAATGGGAAACTGTTGCCACTAATTTCGATGAATTT 1119
Query 1152 CAAGATGTTTCTGAAAAACTTCTTCAGAGTAGTAGTAGAATTGAAGTTTCTCTAGGGAAG 1211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1120 CAAGATGTTTCTGAAAAACTTCTTCAGAGTAGTAGTAGAATTGAAGTTTCTCTAGGGAAG 1179
Query 1212 AAGTTAGTAAAAGATATGCTTCCTGAGATAGAAAAAGAACACAAGAGGAAAGAAAAATTG 1271
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1180 AAGTTAGTGAAAGATATGCTTCCTGAGATAGAAAAAGAACACAAGAGGAAAGAAAAATTG 1239
Query 1272 TTGAAAAAGCAACACAGACAGGCTCTTCTCCTTGATAACTTTGTGGTTGTTGATGGTCTT 1331
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1240 TTGAAAAAGCAACACAGACAGGCTCTCCTCCTTGATAACTTTGTGGTTGTTGATGGTCTT 1299
Query 1332 GCTGGGCGATCTCTCCGTGATAGGAAGCCAGTTAGATACACTTTTG--A-TG--A-T--- 1382
|||||||||||||||||||||||||| ||||||||||||||||||| | || | |
Sbjct 1300 GCTGGGCGATCTCTCCGTGATAGGAAACCAGTTAGATACACTTTTGGTAATGTTAATGAC 1359
Query 1383 -T-AT----G-A--T-A--A-G-T----CCATAAATGATGCTATCAAGATAACAAAGAAG 1424
| || | | | | | | | ||||||||||||||||||||||||||||||||
Sbjct 1360 CTGATTATTGCAGATGATTATGATAAGTCCATAAATGATGCTATCAAGATAACAAAGAAG 1419
Query 1425 AAACATCCATCACCAGAACATCCTCTCCACAGAAGAGAATCTGCCAGGTTGGACGCTCTT 1484
||||||||||||||||||| ||||||| | ||||||||||||||||| ||||||||||||
Sbjct 1420 AAACATCCATCACCAGAACCTCCTCTCAATAGAAGAGAATCTGCCAGATTGGACGCTCTT 1479
Query 1485 GCGAATGGCAGATCGACCAGTTCAACCCACCCTACTGAGCCTGTGAACGATACAGCATCT 1544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1480 GCGAATGGCAGATCGACCAGTTCAACCCACCCTACTGAGCCTGTGAACGATACAGCATCT 1539
Query 1545 GGGAGATCTTCTGATTTTGCTGATTATGATGATTTCGATGAGCATAGAGATGAATCTTTG 1604
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1540 GGGAGATCTTCTGATTTTGCTGATTATGATGATTTCGATGAGCATAGAGATGAATCATTG 1599
Query 1605 GACAGAAGGC--G-CA--G-----A--CAACGACCTCAACGATATTCAGCTACGGACTTT 1652
|||||||||| | || | | |||||||||||||||||||||||||||||||||
Sbjct 1600 GACAGAAGGCAAGACACTGTGCGCAGACAACGACCTCAACGATATTCAGCTACGGACTTT 1659
Query 1653 GTTGAAACTGTTTCAGACAATGAGGTAGAATTTCAAAGTGACGATGACATTTATGGGGAA 1712
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1660 GTTGAAACTGTTTCAGACAATGAGGTAGAATTTCAAAGTGACGATGACATATATGGGGAA 1719
Query 1713 GCAGTTTATGATGAAGAATATCTGAAGAAGCGTAAACAGAAAAAGCTCTCTAGCGGTTCT 1772
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 1720 GCAGTTTATGATGAAGAATATCTGAGGAAGCGTAAACAGAAAAAGCTCTCTAGTGGTTCT 1779
Query 1773 GAGGGAGATGAAGAAAAGGGAGATGAAGAATACAAATGGGATGAAGACAATGCTGAGTAT 1832
|||||||||||||| | | | ||||||||||||||||||||| ||||||
Sbjct 1780 GAGGGAGATGAAGA---G-----T-A------CAAATGGGATGAAGACAATGCCGAGTAT 1824
Query 1833 GAGgaagaagaagaagaggaagaagaagaagaTTCCCTAAGTGCAAGCGAAGAGGATAGT 1892
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1825 GAGGAAGAAGAAGAAGAGGAAGAAGAAGAAGATTCTCTAAGTGCAAGTGAAGAGGATAGT 1884
Query 1893 GATGAACCCCGGAGGGCTAAGAAAATGCCACGGAGAGAAACTAAGTTAAGATCAAGATCA 1952
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1885 GATGAACCCCGGAGGACTAAGAAAGTGCCACGGAGAGAAACTAAGTTAAGATCAAGATCA 1944
Query 1953 AATGATTTTCGGCCAGGCCTGAGACGAAGTAAAAGAGCCACGCGAATTGATTACCAACAA 2012
|||||||||||||||||||||||||| || |||||||||||| |||| ||||||||||||
Sbjct 1945 AATGATTTTCGGCCAGGCCTGAGACGTAGCAAAAGAGCCACGAGAATCGATTACCAACAA 2004
Query 2013 TATGAGTTCTCAGACTCGGACAAAGAAGCAACAGGACTGGCAAAACGTAAGCGGTTTGTT 2072
|||||| |||||||||| |||||||||||| ||||| ||||||||||||||||||| |||
Sbjct 2005 TATGAGCTCTCAGACTCAGACAAAGAAGCAGCAGGATTGGCAAAACGTAAGCGGTTGGTT 2064
Query 2073 GAGCCGGACGAACCTTCTGATGAAACAGGGAATGGGGATTTCACAATGGGAAGTCAGGAC 2132
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2065 GAGCCGGATGAACCTTCGGATGAAACAGGGAATGGGGATTTCACAATGGGAAGTCAGGAC 2124
Query 2133 TCTGAAGAAAATGCAAACGACCCAGAAACAAAATCTGGTGAAGAAGAAG---A-G----- 2183
||||||||||||||||| ||||||||||||||||||||||||||||||| | |
Sbjct 2125 TCTGAAGAAAATGCAAATGACCCAGAAACAAAATCTGGTGAAGAAGAAGTTGAAGAAGAA 2184
Query 2184 ---CCGAGAGATGTCAATGACAATGCAGATACAACAAATGGAAAAGAGAATAACCAACTT 2240
|||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 2185 GAGCCGAGAGAGGTCAATGACAATGCAGAGACAACAAATGGTAAAGAGAATAACCAACTT 2244
Query 2241 AACAAATCAAACGGCACAACAGACCAAGAAGAAGTTGAGGGTGTAGTAGGCAAAAGGCGT 2300
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 2245 AACAAATCAAACGGCATAGCAGACCAAGAAGAAGTTGAGGGTGTAGTAGGCAAAAGGCGT 2304
Query 2301 TACCTCGACTTAAACGAGCTGGCCCCGGTATCTGGTTTTGATGATGGCCCAAGTACAGTA 2360
||||| |||||||||||||||||||| || ||||||||||||||||| ||||||||||||
Sbjct 2305 TACCTTGACTTAAACGAGCTGGCCCCTGTGTCTGGTTTTGATGATGGTCCAAGTACAGTA 2364
Query 2361 TTGAAGGATGATGATAAGACAGACAATTCATAAGCAAGAAAGAGAG---T-T-T--GCCT 2413
|||||||||||||||||||||||||||||||||||||||||||||| | | | |||
Sbjct 2365 TTGAAGGATGATGATAAGACAGACAATTCATAAGCAAGAAAGAGAGACCTCTCTTTGCCG 2424
Query 2414 TCATAAAGCT-C--CCTCTGGTCGATCACCATTGTATGATAAGCAAGATTTTCACGAGTT 2470
|||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2425 TCATAAAGCTTCTTCCTCTGGTCAATCACCATTGTATGATAAGCAAGATTTTCACGAGTT 2484
Query 2471 ATTTCTGGCAACATCCCCTTGCAGAGAAAAGTTGAAACGGTAAGAGACACTCCATTGGCT 2530
||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2485 ATTTCTGGCAAAAACCCCTTGCAGAGAAAAGTTGAAACGGTAAGAGACACTTCATTGGCT 2544
Query 2531 TTTTCTTCATTCAAGCATATCTGCCTTCTTGTTGTTTT-AAAGTAATTCAGGCAAATTCG 2589
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2545 TTTTCTTCATTCAAGCATATCTGCCTTCTTGTTGTTTTTAAAGTAATTCAGGCAAATTCG 2604
Query 2590 GCT-GATAAGTGAAGAGGAGAATGTTATGGAGGCCGAAGAGGTATGTGTAGATTAGGTTA 2648
| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2605 GTTTGATAAGTGAAGAGGAGAATGTTGTGGAGGCCGAAGAGGTATGTGTAGATTAGGTTA 2664
Query 2649 GTCATTTTTT-CTTACCATGAAGAAAGAAACAATGAAGAGGGTGAACCAGATATTCCTAA 2707
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2665 GTCATTTTTTTCTTACCATGAAGAAAGAAACAATGAAGAGGGTGAACCAGATATTCCTAA 2724
Query 2708 GAGCTGTTTAATGTTTT 2724
|||||||| ||||||||
Sbjct 2725 GAGCTGTTCAATGTTTT 2741
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103034112725
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5