BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18960.1
Length=1026
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472119 jgi|Araly1|472119|fgenesh2_kg.1__2073__AT1G18960.1 1260 0.0
> Ahg472119 jgi|Araly1|472119|fgenesh2_kg.1__2073__AT1G18960.1
Length=858
Score = 1260 bits (682), Expect = 0.0
Identities = 763/802 (95%), Gaps = 5/802 (1%)
Strand=Plus/Plus
Query 87 TTTCTTTTAAAGGAAAATGGTGAGATCTTGTTCTTCAAAATCAAAGAATCCTTGGACAAA 146
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 58 TTTCTTTCAAAGGAAAATGGTGAGATCTTGTTCTTCAAAATCAAAAAATCCTTGGGCAAA 117
Query 147 CGAAGAAGACACAACCCAAAAGTTTGTGTTTGCGTCTGCGTCCAAAAACGGATGTGCAGC 206
|||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 118 CGAAGAAGACACCGCCCAAAAGTTTGTGTTTGCATCTGCGTCCAAAAACGGATCTGCAGC 177
Query 207 TCCTAAGAAAATAGGACTTAGGAGATGTGGAAAGAGTTGCAGAGTGAGAAAGACTGATCA 266
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 178 TCCTAAGAAAATAGGACTTAGGAGATGTGGGAAGAGTTGCAGAGTGAGAAAGACTGATCA 237
Query 267 TTCAGGAACCAAA-CATGAGAGCTTCACTTCTGAAGACGAAGATCTGATCATCAAGATGC 325
|||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 238 TTCAGGAA-CAAAGCATGAGAGCTTCACTTCTGAAGAAGAAGATCTGATCATCAAGATGC 296
Query 326 ACGCAGCAATGGGAAGCAGATGGCAACTTATTGCACAACATTTACCAGGAAAGACAGAAG 385
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 297 ACGCAGCAATGGGAAGCAGGTGGCAACTTATTGCACAACATTTACCAGGAAAGACAGAAG 356
Query 386 AAGAAGTGAAGATGTTTTGGAACACAAAACTGAAGAAGAAACTGTCGGAAATGGGGATAG 445
||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||
Sbjct 357 AAGAAGTGAAGATGTTTTGGAACACAAAACTAAAGAAGAAACTGTCTGAGATGGGGATAG 416
Query 446 ATCATGTCACTCACCGTCCCTTTTCTCACGTACTTGCTGAATACGGCAACATCAATGGTG 505
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 417 ATCATGTCACTCACCGGCCCTTCTCTCACGTACTTGCTGAATACGGCAACATCAATGGTG 476
Query 506 GTGGAAACCTAAACCCTAATCCCTCGAACCAAGCCGGATCTCTTGGACGCAATCACTCGC 565
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 477 GTGGAAACCTAAACCCTAATCCCTTGAACCAAGCCGGATCTCTTGGACGTAATCACTCGC 536
Query 566 TCAATGATGATGGTCATCAACAACAAC--C-TAATGATTCAGGAGATCTCATGTTTCATT 622
|||| ||||||| |||||||||||||| | | |||||||||||||||||||||||||||
Sbjct 537 TCAACGATGATGCTCATCAACAACAACAACCTGATGATTCAGGAGATCTCATGTTTCATT 596
Query 623 TACAAGCAATCAAGCTTATGACAGATTCATCGAACCAAGTCAAGCCTGAGTCTACGTTTG 682
|||||||||||||||||||||| || ||||| |||||||||||||| |||||||||||||
Sbjct 597 TACAAGCAATCAAGCTTATGACTGAGTCATCAAACCAAGTCAAGCCCGAGTCTACGTTTG 656
Query 683 TGTACGCCTCTTCGTCTTCTTCTAACTCGTCTCCTCCATTGTTCTCTTCAACTTGTTCTA 742
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 657 TGTACGCCTCTTCGTCTTCTTCTAATTCGTCTCCTCCATTATTCTCTTCAACTTGTTCTA 716
Query 743 CCATAGCTCAGGAGAATTCAGAGGTTAACTTCACTTGGTCTGACTTCCTTCTTGACCAAG 802
|||| ||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||
Sbjct 717 CCATTGCTCAGGAGAATTTAGAGGTTAACTTCACTTGGTCTGACTTTCTTCTTGAACAAG 776
Query 803 AAACCTTCCATGAAAACCAACAGAATCATCCTCAAGAACTAGACAGCTTGTTTGGGAACG 862
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 777 AAACCTTCCATGAAAACCAACAGAGTCATCCTCAAGAACTAGACAGCTTGTTTGGGAACG 836
Query 863 ACTTCTCCGAGGTAACAGCAGC 884
||||||| |||| | |||||||
Sbjct 837 ACTTCTCTGAGGCAGCAGCAGC 858
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38161039917
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5