BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G18960.1 Length=1026 Score E Sequences producing significant alignments: (Bits) Value Ahg472119 jgi|Araly1|472119|fgenesh2_kg.1__2073__AT1G18960.1 1260 0.0 > Ahg472119 jgi|Araly1|472119|fgenesh2_kg.1__2073__AT1G18960.1 Length=858 Score = 1260 bits (682), Expect = 0.0 Identities = 763/802 (95%), Gaps = 5/802 (1%) Strand=Plus/Plus Query 87 TTTCTTTTAAAGGAAAATGGTGAGATCTTGTTCTTCAAAATCAAAGAATCCTTGGACAAA 146 ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||| Sbjct 58 TTTCTTTCAAAGGAAAATGGTGAGATCTTGTTCTTCAAAATCAAAAAATCCTTGGGCAAA 117 Query 147 CGAAGAAGACACAACCCAAAAGTTTGTGTTTGCGTCTGCGTCCAAAAACGGATGTGCAGC 206 |||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||| Sbjct 118 CGAAGAAGACACCGCCCAAAAGTTTGTGTTTGCATCTGCGTCCAAAAACGGATCTGCAGC 177 Query 207 TCCTAAGAAAATAGGACTTAGGAGATGTGGAAAGAGTTGCAGAGTGAGAAAGACTGATCA 266 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 178 TCCTAAGAAAATAGGACTTAGGAGATGTGGGAAGAGTTGCAGAGTGAGAAAGACTGATCA 237 Query 267 TTCAGGAACCAAA-CATGAGAGCTTCACTTCTGAAGACGAAGATCTGATCATCAAGATGC 325 |||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 238 TTCAGGAA-CAAAGCATGAGAGCTTCACTTCTGAAGAAGAAGATCTGATCATCAAGATGC 296 Query 326 ACGCAGCAATGGGAAGCAGATGGCAACTTATTGCACAACATTTACCAGGAAAGACAGAAG 385 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 297 ACGCAGCAATGGGAAGCAGGTGGCAACTTATTGCACAACATTTACCAGGAAAGACAGAAG 356 Query 386 AAGAAGTGAAGATGTTTTGGAACACAAAACTGAAGAAGAAACTGTCGGAAATGGGGATAG 445 ||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||| Sbjct 357 AAGAAGTGAAGATGTTTTGGAACACAAAACTAAAGAAGAAACTGTCTGAGATGGGGATAG 416 Query 446 ATCATGTCACTCACCGTCCCTTTTCTCACGTACTTGCTGAATACGGCAACATCAATGGTG 505 |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| Sbjct 417 ATCATGTCACTCACCGGCCCTTCTCTCACGTACTTGCTGAATACGGCAACATCAATGGTG 476 Query 506 GTGGAAACCTAAACCCTAATCCCTCGAACCAAGCCGGATCTCTTGGACGCAATCACTCGC 565 |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| Sbjct 477 GTGGAAACCTAAACCCTAATCCCTTGAACCAAGCCGGATCTCTTGGACGTAATCACTCGC 536 Query 566 TCAATGATGATGGTCATCAACAACAAC--C-TAATGATTCAGGAGATCTCATGTTTCATT 622 |||| ||||||| |||||||||||||| | | ||||||||||||||||||||||||||| Sbjct 537 TCAACGATGATGCTCATCAACAACAACAACCTGATGATTCAGGAGATCTCATGTTTCATT 596 Query 623 TACAAGCAATCAAGCTTATGACAGATTCATCGAACCAAGTCAAGCCTGAGTCTACGTTTG 682 |||||||||||||||||||||| || ||||| |||||||||||||| ||||||||||||| Sbjct 597 TACAAGCAATCAAGCTTATGACTGAGTCATCAAACCAAGTCAAGCCCGAGTCTACGTTTG 656 Query 683 TGTACGCCTCTTCGTCTTCTTCTAACTCGTCTCCTCCATTGTTCTCTTCAACTTGTTCTA 742 ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct 657 TGTACGCCTCTTCGTCTTCTTCTAATTCGTCTCCTCCATTATTCTCTTCAACTTGTTCTA 716 Query 743 CCATAGCTCAGGAGAATTCAGAGGTTAACTTCACTTGGTCTGACTTCCTTCTTGACCAAG 802 |||| ||||||||||||| ||||||||||||||||||||||||||| |||||||| |||| Sbjct 717 CCATTGCTCAGGAGAATTTAGAGGTTAACTTCACTTGGTCTGACTTTCTTCTTGAACAAG 776 Query 803 AAACCTTCCATGAAAACCAACAGAATCATCCTCAAGAACTAGACAGCTTGTTTGGGAACG 862 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 777 AAACCTTCCATGAAAACCAACAGAGTCATCCTCAAGAACTAGACAGCTTGTTTGGGAACG 836 Query 863 ACTTCTCCGAGGTAACAGCAGC 884 ||||||| |||| | ||||||| Sbjct 837 ACTTCTCTGAGGCAGCAGCAGC 858 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38161039917 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5