BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18970.1
Length=810
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920839 jgi|Araly1|920839|scaffold_102120.1 1011 0.0
Ahg472121 jgi|Araly1|472121|fgenesh2_kg.1__2075__AT1G18980.1 717 0.0
> Ahg920839 jgi|Araly1|920839|scaffold_102120.1
Length=710
Score = 1011 bits (547), Expect = 0.0
Identities = 629/669 (94%), Gaps = 3/669 (0%)
Strand=Plus/Plus
Query 1 CTCATCAA-AAGCTATGGCTACTCTCCAAATAC-CTTCTGCTCTTTTAAGATCTTTCCTT 58
|||||||| |||||||||||||||||||||| | ||||| ||||||| ||||||||||||
Sbjct 7 CTCATCAATAAGCTATGGCTACTCTCCAAAT-CTCTTCTTCTCTTTTCAGATCTTTCCTT 65
Query 59 CTTATGTTTTGTCTCTTTGTAATCCCATCTCTCTCATCTGATTCTGATCCTTTACAAGAC 118
|| | | |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 66 CTAACGCTTTGTCTCTTCGTAATCCCATCTCTCTCATCTGATTCTGATCCTTTACAAGAC 125
Query 119 TTCTGCGTTGGCGATCTCAAAGCTTCTGCTTCCATCAATGGCTTTCCATGCAAATCAGCC 178
|||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 126 TTCTGCATCGGCGATCTCAAAGCTTCTCCTTCCATCAATGGCTTTCCATGCAAATCAGCC 185
Query 179 GTTTCTGCTTCTGACTTCTTCTACTCCGGTTTAGGTGGCCCCTTAGACACGTCAAACCCT 238
|||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||
Sbjct 186 GTTTCTGCTTCTGACTTCTTCTACTCCGGTTTAGGTGGTCCCTTAGACACTTCGAACCCT 245
Query 239 AACGGAGTAACCGTTGCTCCCGCCAACGTCTTAACCTTCCCGGGTCTAAACACTTTAGGA 298
||||| || ||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 246 AACGGTGTTACCGTTGCTCCCGCCAACGTCCTAACCTTTCCGGGTCTAAACACTTTAGGA 305
Query 299 ATCTCGATGAATAACGTTGAGCTAGCTCCAGGAGGTGTAAATCCGCCTCACTTGCACCCG 358
||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 306 ATCTCGATGAACAACGTTGAATTAGCTCCAGGCGGTGTAAATCCGCCTCACTTGCACCCG 365
Query 359 CGTGCAACCGAAGTAGGAACTGTGATCGAAGGCTCGGTGTTTGTCGGATTCTTGAGTACC 418
||||||||||||||||||||| | |||||||||||||| |||||||||||||||| ||||
Sbjct 366 CGTGCAACCGAAGTAGGAACTATAATCGAAGGCTCGGTTTTTGTCGGATTCTTGACTACC 425
Query 419 AACAACACTTTGTTCTCAAAAGTTTTGAATGCAGGAGAGGCGTTTGTTATCCCTAGAGGA 478
|||||||||||||||||||| ||||||||||| ||||||| ||||||||| |||||||||
Sbjct 426 AACAACACTTTGTTCTCAAAGGTTTTGAATGCCGGAGAGGTGTTTGTTATACCTAGAGGA 485
Query 479 TTGGTTCATTTCCAATGGAACGTTGGCCAAGTGAAAGCGCGAATGATAACCGCTTTTAAC 538
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 486 TTGGTTCATTTCCAATGGAACGTTGGCCAAGTGAAAGCGCGCATGATAACCGCTTTTAAC 545
Query 539 AGCCAGCTCCCAGGAGCAGTTGTTTTGCCTAGTACTCTGTTCGGCTCGAAACCTGAGATT 598
||||| || |||||||||||||||||||||||||||||||| ||||| || |||||||||
Sbjct 546 AGCCAACTTCCAGGAGCAGTTGTTTTGCCTAGTACTCTGTTTGGCTCCAACCCTGAGATT 605
Query 599 CCAAACGCAGTCCTGACCAGAGCGTTTAGGACTGATGATACAACTGTGCAGAATCTCAAG 658
||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||
Sbjct 606 CCAAACGCAGTCCTGACCAGAGCGTTTAGAACTGATGTTACAACTGTGCAGAATCTAAAG 665
Query 659 TCCAAGTTT 667
|||||||||
Sbjct 666 TCCAAGTTT 674
> Ahg472121 jgi|Araly1|472121|fgenesh2_kg.1__2075__AT1G18980.1
Length=705
Score = 717 bits (388), Expect = 0.0
Identities = 578/671 (86%), Gaps = 8/671 (1%)
Strand=Plus/Plus
Query 10 AGCTATGGCTACTCTCCAAATAC-CTTCTGCTCTTTTAAGATCTTTCCTTCTTATGTTTT 68
||||||| | ||||||||||| | ||||| | ||||| |||| |||| |||| | | |||
Sbjct 1 AGCTATGACAACTCTCCAAAT-CTCTTCTTCACTTTTCAGATATTTCTTTCTAACGCTTT 59
Query 69 GTCTCTTTGTAATCCCATCTCTCTCATCTGATTCTGATCCTTTACAAGACTTCTGCGTTG 128
||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 60 GTCTCTTCGCAATCCCATCTCTCTCATCTGATTCTGATCCTTTACAAGACTTCTGCGTCG 119
Query 129 GCGATCTCAAAGCTTCTGCTTCCATCAATGGCTTTCCATGCAAATCAGCCGTTTCTGCTT 188
|||||||||||||||| |||||||||||||||| || ||||||||| |||| || ||||
Sbjct 120 GCGATCTCAAAGCTTCCCCTTCCATCAATGGCTTCCCTTGCAAATCATCCGTCTCGGCTT 179
Query 189 CTGACTTCTTCTACTCCGGTTTAGGTGGCCCCTTAGACACGTCAAACCCTAACGGAGTAA 248
|||||||||||| |||||| |||||||| |||||| |||| || ||| ||||||| ||
Sbjct 180 CTGACTTCTTCTTCTCCGGCTTAGGTGGTCCCTTAAACACCTCGAACGCTAACGGTGTGT 239
Query 249 CCGTTGCTCCCGCCAACGTCTTAACCTTCCCGGGTCTAAACACTTTAGGAATCTCGATGA 308
||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||
Sbjct 240 CCGTTGCTCCCGCCAACGTCTTAACTTTTCCGGGTCTAAACACTTTAGGACTCTCGATGA 299
Query 309 ATAACGTTGAGCTAGCTCCAGGAGGTGTAAATCCGCCTCACTTGCACCCGCGTGCAACCG 368
| ||||| || | |||||||| ||||||||||||||||||| || ||||||||||| |
Sbjct 300 ACAACGTCGAATTCGCTCCAGGCGGTGTAAATCCGCCTCACTCACATCCGCGTGCAACAG 359
Query 369 AAGTAGGAACTGTGATCGAAGGCTCGGTGTTTGTCGGATTCTTGAGTACCAACAACACTT 428
||| ||||| |||||| ||||| ||||| |||||||| ||||||| |||||||||||||
Sbjct 360 AAGCAGGAATTGTGATAGAAGGGTCGGTTTTTGTCGGGTTCTTGACTACCAACAACACTC 419
Query 429 TGTTCTCAAAAGTTTTG-AATGCAGGAGAGGCGTTTGTTATCCCTAGAGGATTGGTTCAT 487
||||||| || ||| | || || |||||| ||||||| |||| |||||||||||||||
Sbjct 420 TGTTCTCGAAGGTTATACAA-GCCGGAGAGATGTTTGTTGTCCCAAGAGGATTGGTTCAT 478
Query 488 TTCCAATGGAACGTTGGCCAAGTGAAAGCGCGAATGATAACCGCTTTTAACAGCCAGCTC 547
||||||||||| ||||| ||||||||||||| |||||||| |||| ||||| |||||
Sbjct 479 TTCCAATGGAATGTTGGTAAAGTGAAAGCGCGTTTGATAACCTCTTTCAACAGTCAGCTT 538
Query 548 CCAGGAGCAGTTGTTTTGCCTAGTACTCTGTTCGGCTCGAAA-CCTGA-GATTCCAAACG 605
|||||| ||| |||| |||||||||||||||| ||||| ||| ||| | ||||||||| |
Sbjct 539 CCAGGATCAGCTGTTCTGCCTAGTACTCTGTTTGGCTC-AAATCCT-ACGATTCCAAATG 596
Query 606 CAGTCCTGACCAGAGCGTTTAGGACTGATGATACAACTGTGCAGAATCTCAAGTCCAAGT 665
| || |||||| | ||||||||||||||||| |||||| | || |||||||||||||
Sbjct 597 CGGTTTTGACCAAAACGTTTAGGACTGATGATGTTACTGTGAACAAACTCAAGTCCAAGT 656
Query 666 TTGCTGTTTGA 676
|||||||||||
Sbjct 657 TTGCTGTTTGA 667
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29926489845
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5