BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G18980.1 Length=792 Score E Sequences producing significant alignments: (Bits) Value Ahg472121 jgi|Araly1|472121|fgenesh2_kg.1__2075__AT1G18980.1 994 0.0 Ahg920839 jgi|Araly1|920839|scaffold_102120.1 798 0.0 > Ahg472121 jgi|Araly1|472121|fgenesh2_kg.1__2075__AT1G18980.1 Length=705 Score = 994 bits (538), Expect = 0.0 Identities = 627/670 (94%), Gaps = 6/670 (1%) Strand=Plus/Plus Query 16 AGCCATGACTACTCTCCAAatctcttcttctcttttcagatcttttc-ttcttgtgatct 74 ||| ||||| |||||||||||||||||||| |||||||||| |||| |||| | | | Sbjct 1 AGCTATGACAACTCTCCAAATCTCTTCTTCACTTTTCAGAT-ATTTCTTTCTAACGCTTT 59 Query 75 gtgtctttgtaatcccatctctctcatctGATTCTGATCCTTTACAAGACTTCTGCGTCG 134 || |||| | |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 60 GTCTCTTCGCAATCCCATCTCTCTCATCTGATTCTGATCCTTTACAAGACTTCTGCGTCG 119 Query 135 GCGATCTCAAAGCTTCTCCTTCCATCAATGGCTTCCCTTGCAAATCATCCGTCTCCGCTT 194 |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 120 GCGATCTCAAAGCTTCCCCTTCCATCAATGGCTTCCCTTGCAAATCATCCGTCTCGGCTT 179 Query 195 CTGACTTCTTCTTCTCCGGCTTAGGTGGTCCTTTAAACACCTCGACCCCTAACGGCGTAG 254 ||||||||||||||||||||||||||||||| ||||||||||||| | ||||||| || | Sbjct 180 CTGACTTCTTCTTCTCCGGCTTAGGTGGTCCCTTAAACACCTCGAACGCTAACGGTGT-G 238 Query 255 -CCGTTTCCCCCGCCAATGTCCTAACTTTTCCGGGTCTAAACACTTTAGGACTCTCGATG 313 ||||| | |||||||| ||| |||||||||||||||||||||||||||||||||||||| Sbjct 239 TCCGTTGCTCCCGCCAACGTCTTAACTTTTCCGGGTCTAAACACTTTAGGACTCTCGATG 298 Query 314 AACAACGTTGAATTCGCTCCAGGCGGTGTAAATCCTCCTCACTCGCATCCGCGTGCAACC 373 |||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct 299 AACAACGTCGAATTCGCTCCAGGCGGTGTAAATCCGCCTCACTCACATCCGCGTGCAACA 358 Query 374 GAAGCAGGAGTTGTGATCGAAGGCTCGGTTTTTGTCGGGTTCTTGACTACTAACAACACT 433 ||||||||| ||||||| ||||| |||||||||||||||||||||||||| ||||||||| Sbjct 359 GAAGCAGGAATTGTGATAGAAGGGTCGGTTTTTGTCGGGTTCTTGACTACCAACAACACT 418 Query 434 CTGTTCTCGAAGGTT-TTGAATGCCGGAGAGATGTTTGTTGTCCCTAGAGGATTGGTTCA 492 ||||||||||||||| | || ||||||||||||||||||||||| |||||||||||||| Sbjct 419 CTGTTCTCGAAGGTTATACAA-GCCGGAGAGATGTTTGTTGTCCCAAGAGGATTGGTTCA 477 Query 493 TTTCCAATGGAATGTTGGTAAAGTGAAAGCGCGTTTGATAACCTCTTTCAACAGTCAGCT 552 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 478 TTTCCAATGGAATGTTGGTAAAGTGAAAGCGCGTTTGATAACCTCTTTCAACAGTCAGCT 537 Query 553 TCCAGGATCGGCTGTTCTGCCTAGTACTCTGTTTGGCTCAAACCCTACCATTCCAAATGC 612 ||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 538 TCCAGGATCAGCTGTTCTGCCTAGTACTCTGTTTGGCTCAAATCCTACGATTCCAAATGC 597 Query 613 TGTTTTGACCAAAACGTTTAGGACTGATGATGTTACTGTGAACAAACTCAAGTCCAAGTT 672 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 598 GGTTTTGACCAAAACGTTTAGGACTGATGATGTTACTGTGAACAAACTCAAGTCCAAGTT 657 Query 673 TGCTGTTTGA 682 |||||||||| Sbjct 658 TGCTGTTTGA 667 > Ahg920839 jgi|Araly1|920839|scaffold_102120.1 Length=710 Score = 798 bits (432), Expect = 0.0 Identities = 593/672 (88%), Gaps = 5/672 (1%) Strand=Plus/Plus Query 5 TTCTCATCAAT-AGCCATGACTACTCTCCAAatctcttcttctcttttcagatcttttct 63 ||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||| || Sbjct 5 TTCTCATCAATAAGCTATGGCTACTCTCCAAATCTCTTCTTCTCTTTTCAGATCTTTCCT 64 Query 64 tcttgtgatctgtgtctttgtaatcccatctctctcatctGATTCTGATCCTTTACAAGA 123 ||| | | ||| |||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 65 TCTAACGCTTTGTCTCTTCGTAATCCCATCTCTCTCATCTGATTCTGATCCTTTACAAGA 124 Query 124 CTTCTGCGTCGGCGATCTCAAAGCTTCTCCTTCCATCAATGGCTTCCCTTGCAAATCATC 183 ||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||| | Sbjct 125 CTTCTGCATCGGCGATCTCAAAGCTTCTCCTTCCATCAATGGCTTTCCATGCAAATCAGC 184 Query 184 CGTCTCCGCTTCTGACTTCTTCTTCTCCGGCTTAGGTGGTCCTTTAAACACCTCGACCCC 243 ||| || |||||||||||||||| |||||| ||||||||||| ||| |||| |||| ||| Sbjct 185 CGTTTCTGCTTCTGACTTCTTCTACTCCGGTTTAGGTGGTCCCTTAGACACTTCGAACCC 244 Query 244 TAACGGCGT-AGCCGTTTCCCCCGCCAATGTCCTAACTTTTCCGGGTCTAAACACTTTAG 302 |||||| || | ||||| | |||||||| |||||||| |||||||||||||||||||||| Sbjct 245 TAACGGTGTTA-CCGTTGCTCCCGCCAACGTCCTAACCTTTCCGGGTCTAAACACTTTAG 303 Query 303 GACTCTCGATGAACAACGTTGAATTCGCTCCAGGCGGTGTAAATCCTCCTCACTCGCATC 362 || |||||||||||||||||||||| |||||||||||||||||||| ||||||| ||| | Sbjct 304 GAATCTCGATGAACAACGTTGAATTAGCTCCAGGCGGTGTAAATCCGCCTCACTTGCACC 363 Query 363 CGCGTGCAACCGAAGCAGGAGTTGTGATCGAAGGCTCGGTTTTTGTCGGGTTCTTGACTA 422 ||||||||||||||| |||| | | ||||||||||||||||||||||| |||||||||| Sbjct 364 CGCGTGCAACCGAAGTAGGAACTATAATCGAAGGCTCGGTTTTTGTCGGATTCTTGACTA 423 Query 423 CTAACAACACTCTGTTCTCGAAGGTTTTGAATGCCGGAGAGATGTTTGTTGTCCCTAGAG 482 | ||||||||| ||||||| ||||||||||||||||||||| |||||||| | ||||||| Sbjct 424 CCAACAACACTTTGTTCTCAAAGGTTTTGAATGCCGGAGAGGTGTTTGTTATACCTAGAG 483 Query 483 GATTGGTTCATTTCCAATGGAATGTTGGTAAAGTGAAAGCGCGTTTGATAACCTCTTTCA 542 |||||||||||||||||||||| ||||| ||||||||||||| |||||||| |||| | Sbjct 484 GATTGGTTCATTTCCAATGGAACGTTGGCCAAGTGAAAGCGCGCATGATAACCGCTTTTA 543 Query 543 ACAGTCAGCTTCCAGGATCGGCTGTTCTGCCTAGTACTCTGTTTGGCTCAAACCCT-ACC 601 |||| || ||||||||| | | |||| |||||||||||||||||||||| |||||| | Sbjct 544 ACAGCCAACTTCCAGGAGCAGTTGTTTTGCCTAGTACTCTGTTTGGCTCCAACCCTGAG- 602 Query 602 ATTCCAAATGCTGTTTTGACCAAAACGTTTAGGACTGATGATGTTACTGTGAACAAACTC 661 |||||||| || || |||||| | ||||||| ||||||| | |||||| | || || Sbjct 603 ATTCCAAACGCAGTCCTGACCAGAGCGTTTAGAACTGATGTTACAACTGTGCAGAATCTA 662 Query 662 AAGTCCAAGTTT 673 |||||||||||| Sbjct 663 AAGTCCAAGTTT 674 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29240277339 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5