BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18980.1
Length=792
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472121 jgi|Araly1|472121|fgenesh2_kg.1__2075__AT1G18980.1 994 0.0
Ahg920839 jgi|Araly1|920839|scaffold_102120.1 798 0.0
> Ahg472121 jgi|Araly1|472121|fgenesh2_kg.1__2075__AT1G18980.1
Length=705
Score = 994 bits (538), Expect = 0.0
Identities = 627/670 (94%), Gaps = 6/670 (1%)
Strand=Plus/Plus
Query 16 AGCCATGACTACTCTCCAAatctcttcttctcttttcagatcttttc-ttcttgtgatct 74
||| ||||| |||||||||||||||||||| |||||||||| |||| |||| | | |
Sbjct 1 AGCTATGACAACTCTCCAAATCTCTTCTTCACTTTTCAGAT-ATTTCTTTCTAACGCTTT 59
Query 75 gtgtctttgtaatcccatctctctcatctGATTCTGATCCTTTACAAGACTTCTGCGTCG 134
|| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 GTCTCTTCGCAATCCCATCTCTCTCATCTGATTCTGATCCTTTACAAGACTTCTGCGTCG 119
Query 135 GCGATCTCAAAGCTTCTCCTTCCATCAATGGCTTCCCTTGCAAATCATCCGTCTCCGCTT 194
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 120 GCGATCTCAAAGCTTCCCCTTCCATCAATGGCTTCCCTTGCAAATCATCCGTCTCGGCTT 179
Query 195 CTGACTTCTTCTTCTCCGGCTTAGGTGGTCCTTTAAACACCTCGACCCCTAACGGCGTAG 254
||||||||||||||||||||||||||||||| ||||||||||||| | ||||||| || |
Sbjct 180 CTGACTTCTTCTTCTCCGGCTTAGGTGGTCCCTTAAACACCTCGAACGCTAACGGTGT-G 238
Query 255 -CCGTTTCCCCCGCCAATGTCCTAACTTTTCCGGGTCTAAACACTTTAGGACTCTCGATG 313
||||| | |||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 239 TCCGTTGCTCCCGCCAACGTCTTAACTTTTCCGGGTCTAAACACTTTAGGACTCTCGATG 298
Query 314 AACAACGTTGAATTCGCTCCAGGCGGTGTAAATCCTCCTCACTCGCATCCGCGTGCAACC 373
|||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 299 AACAACGTCGAATTCGCTCCAGGCGGTGTAAATCCGCCTCACTCACATCCGCGTGCAACA 358
Query 374 GAAGCAGGAGTTGTGATCGAAGGCTCGGTTTTTGTCGGGTTCTTGACTACTAACAACACT 433
||||||||| ||||||| ||||| |||||||||||||||||||||||||| |||||||||
Sbjct 359 GAAGCAGGAATTGTGATAGAAGGGTCGGTTTTTGTCGGGTTCTTGACTACCAACAACACT 418
Query 434 CTGTTCTCGAAGGTT-TTGAATGCCGGAGAGATGTTTGTTGTCCCTAGAGGATTGGTTCA 492
||||||||||||||| | || ||||||||||||||||||||||| ||||||||||||||
Sbjct 419 CTGTTCTCGAAGGTTATACAA-GCCGGAGAGATGTTTGTTGTCCCAAGAGGATTGGTTCA 477
Query 493 TTTCCAATGGAATGTTGGTAAAGTGAAAGCGCGTTTGATAACCTCTTTCAACAGTCAGCT 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 TTTCCAATGGAATGTTGGTAAAGTGAAAGCGCGTTTGATAACCTCTTTCAACAGTCAGCT 537
Query 553 TCCAGGATCGGCTGTTCTGCCTAGTACTCTGTTTGGCTCAAACCCTACCATTCCAAATGC 612
||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 538 TCCAGGATCAGCTGTTCTGCCTAGTACTCTGTTTGGCTCAAATCCTACGATTCCAAATGC 597
Query 613 TGTTTTGACCAAAACGTTTAGGACTGATGATGTTACTGTGAACAAACTCAAGTCCAAGTT 672
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 GGTTTTGACCAAAACGTTTAGGACTGATGATGTTACTGTGAACAAACTCAAGTCCAAGTT 657
Query 673 TGCTGTTTGA 682
||||||||||
Sbjct 658 TGCTGTTTGA 667
> Ahg920839 jgi|Araly1|920839|scaffold_102120.1
Length=710
Score = 798 bits (432), Expect = 0.0
Identities = 593/672 (88%), Gaps = 5/672 (1%)
Strand=Plus/Plus
Query 5 TTCTCATCAAT-AGCCATGACTACTCTCCAAatctcttcttctcttttcagatcttttct 63
||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 5 TTCTCATCAATAAGCTATGGCTACTCTCCAAATCTCTTCTTCTCTTTTCAGATCTTTCCT 64
Query 64 tcttgtgatctgtgtctttgtaatcccatctctctcatctGATTCTGATCCTTTACAAGA 123
||| | | ||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 65 TCTAACGCTTTGTCTCTTCGTAATCCCATCTCTCTCATCTGATTCTGATCCTTTACAAGA 124
Query 124 CTTCTGCGTCGGCGATCTCAAAGCTTCTCCTTCCATCAATGGCTTCCCTTGCAAATCATC 183
||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||| |
Sbjct 125 CTTCTGCATCGGCGATCTCAAAGCTTCTCCTTCCATCAATGGCTTTCCATGCAAATCAGC 184
Query 184 CGTCTCCGCTTCTGACTTCTTCTTCTCCGGCTTAGGTGGTCCTTTAAACACCTCGACCCC 243
||| || |||||||||||||||| |||||| ||||||||||| ||| |||| |||| |||
Sbjct 185 CGTTTCTGCTTCTGACTTCTTCTACTCCGGTTTAGGTGGTCCCTTAGACACTTCGAACCC 244
Query 244 TAACGGCGT-AGCCGTTTCCCCCGCCAATGTCCTAACTTTTCCGGGTCTAAACACTTTAG 302
|||||| || | ||||| | |||||||| |||||||| ||||||||||||||||||||||
Sbjct 245 TAACGGTGTTA-CCGTTGCTCCCGCCAACGTCCTAACCTTTCCGGGTCTAAACACTTTAG 303
Query 303 GACTCTCGATGAACAACGTTGAATTCGCTCCAGGCGGTGTAAATCCTCCTCACTCGCATC 362
|| |||||||||||||||||||||| |||||||||||||||||||| ||||||| ||| |
Sbjct 304 GAATCTCGATGAACAACGTTGAATTAGCTCCAGGCGGTGTAAATCCGCCTCACTTGCACC 363
Query 363 CGCGTGCAACCGAAGCAGGAGTTGTGATCGAAGGCTCGGTTTTTGTCGGGTTCTTGACTA 422
||||||||||||||| |||| | | ||||||||||||||||||||||| ||||||||||
Sbjct 364 CGCGTGCAACCGAAGTAGGAACTATAATCGAAGGCTCGGTTTTTGTCGGATTCTTGACTA 423
Query 423 CTAACAACACTCTGTTCTCGAAGGTTTTGAATGCCGGAGAGATGTTTGTTGTCCCTAGAG 482
| ||||||||| ||||||| ||||||||||||||||||||| |||||||| | |||||||
Sbjct 424 CCAACAACACTTTGTTCTCAAAGGTTTTGAATGCCGGAGAGGTGTTTGTTATACCTAGAG 483
Query 483 GATTGGTTCATTTCCAATGGAATGTTGGTAAAGTGAAAGCGCGTTTGATAACCTCTTTCA 542
|||||||||||||||||||||| ||||| ||||||||||||| |||||||| |||| |
Sbjct 484 GATTGGTTCATTTCCAATGGAACGTTGGCCAAGTGAAAGCGCGCATGATAACCGCTTTTA 543
Query 543 ACAGTCAGCTTCCAGGATCGGCTGTTCTGCCTAGTACTCTGTTTGGCTCAAACCCT-ACC 601
|||| || ||||||||| | | |||| |||||||||||||||||||||| |||||| |
Sbjct 544 ACAGCCAACTTCCAGGAGCAGTTGTTTTGCCTAGTACTCTGTTTGGCTCCAACCCTGAG- 602
Query 602 ATTCCAAATGCTGTTTTGACCAAAACGTTTAGGACTGATGATGTTACTGTGAACAAACTC 661
|||||||| || || |||||| | ||||||| ||||||| | |||||| | || ||
Sbjct 603 ATTCCAAACGCAGTCCTGACCAGAGCGTTTAGAACTGATGTTACAACTGTGCAGAATCTA 662
Query 662 AAGTCCAAGTTT 673
||||||||||||
Sbjct 663 AAGTCCAAGTTT 674
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29240277339
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5