BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G18990.1 Length=1732 Score E Sequences producing significant alignments: (Bits) Value Ahg472122 jgi|Araly1|472122|fgenesh2_kg.1__2076__AT1G18990.1 2638 0.0 Ahg316417 jgi|Araly1|316417|fgenesh1_pm.C_scaffold_2001450 377 1e-103 > Ahg472122 jgi|Araly1|472122|fgenesh2_kg.1__2076__AT1G18990.1 Length=1678 Score = 2638 bits (1428), Expect = 0.0 Identities = 1601/1684 (95%), Gaps = 13/1684 (1%) Strand=Plus/Plus Query 26 TATCTTCGTGATCGCTTTTTGCAATCACAATAATGTCTAACCGTTCCTTCAAGAATTTCA 85 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TATCTTCGTGATCGCTTCTTGCAATCACAATAATGTCTAACCGTTCCTTCAAGAATTTCA 60 Query 86 TAGAAGAAGAACTTGGAACATTCCCACAGTTCTTAATCTACGCTCTTCTTGAATGGATCC 145 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 61 TAGAAGAAGAACTTGGAACATTCCCGCAGTTCTTAATCTACGCTCTTCTTGAATGGATCC 120 Query 146 TCATCATTATCCTCTTCATCGATGGCTTCCTCGCTTTCTTCTCTAACCAAATCGCTAAAT 205 ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct 121 TCATCATTATCCTCTTCATTGATGGCTTCCTTGCTTTCTTCTCTAACCAAATCGCTAAAT 180 Query 206 TCTTTGACCTCAAAATCCCCTGTCTTCTCTGCACTAGACTCGACCATGTTCTTGTCAGCA 265 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 181 TCTTTGACCTTAAAATCCCCTGTCTTCTCTGCACTAGACTCGACCATGTTCTTGTCAGAA 240 Query 266 GAAACCCTGATTTCTATTACAACGACTCGATATGCGATGCTCACAAGAAGAATGTCTCAT 325 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 GAAACCCTGATTTCTATTACAACGACTCGATATGCGATGCTCACAAGAAGAATGTCTCAT 300 Query 326 CTCTCGCTTACTGTCATGTGCACAAGAAACTCTCTGAGATCAAACGTATGTGTGAAGGAT 385 ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct 301 CTCTCGCTTACTGTCATGTTCACAAGAAACTCTCTGAGATCAAACGAATGTGTGAAGGAT 360 Query 386 GTCTTCTCTCTTTCGCTACCGAGAAAGAAACAGATGTTGATACTTACAAGTCTCTTATTG 445 ||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||| Sbjct 361 GTCTTCTTTCTTTCGCCACCGAGAAAGAATCAGATGTTGATACTTACAAGTCTCTTATTG 420 Query 446 GAATCTTGCATAAGGATCTTGAGCTTCTTATCGACGATGAACGTGAGCTTCAATTGGCGT 505 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 421 GAATCTTACATAAGGATCTTGAGCTTCTTATCGACGATGAACGTGAGCTTCAATTGGCTT 480 Query 506 TTCCGGTTGCGGGTTCGAAGAAAGATGAAAACTTCTATCAGGTTGAGAACAGAACTAACA 565 |||| | ||||||||||||||||||||||||||||||||||||||| | |||||||||| Sbjct 481 TTCCAGCTGCGGGTTCGAAGAAAGATGAAAACTTCTATCAGGTTGATCAGAGAACTAACA 540 Query 566 ATAGCAATGACAGGTTTCAGAGGCAGCAACGTTGTTCTTGTTGTGGGCAGATAATGAAGC 625 ||||||||||||||||||| | ||||||||||||||||||||||||||| || |||||| Sbjct 541 ATAGCAATGACAGGTTTCACAAACAGCAACGTTGTTCTTGTTGTGGGCAGCTATTGAAGC 600 Query 626 TGAAATCCGATAAACCTAAGAGCAATAATCAATCTTTTTTCGGAGCTCCTAGTCCATCTC 685 |||||||||| ||||| |||| |||||| |||||||| |||| |||||||||||| |||| Sbjct 601 TGAAATCCGAAAAACCGAAGAACAATAACCAATCTTTCTTCGCAGCTCCTAGTCCGTCTC 660 Query 686 CTAGAGTTTCATTTAACCAAAGAACTTTGGATTTGTCTAACATTAAATACACGGATTTGC 745 ||||||||||||| || |||||||||||||||||||||||||||||||||||||||| | Sbjct 661 CTAGAGTTTCATTCAATCAAAGAACTTTGGATTTGTCTAACATTAAATACACGGATTCAC 720 Query 746 CTGAGGATGATGATGCT-TTGAACACGAAAGGCGCTTC-GTTGGATGCAGTTGATGACAG 803 | ||||||||||||||| || ||||||||||||||||| | ||||| ||||||||||||| Sbjct 721 CCGAGGATGATGATGCTGTT-AACACGAAAGGCGCTTCAG-TGGATTCAGTTGATGACAG 778 Query 804 AACTCCGAGTTTTGTAAAAGGAGGTAATAAGTTCTTTGGCATTCCGCTTTCTGACTCGGC 863 ||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| ||||| Sbjct 779 AACTCCGAGTTTTGTTAAAGGAGGCAATAAATTCTTTGGCATTCCGCTTTCTGATTCGGC 838 Query 864 TCAGAATAGTCCGCGATGGTCTGTTCGATCAATGAAGAAATCTTTCG-TTGATCAGAATG 922 |||||||||||||||||||||||||||||| |||||||||||| | | |||||||||||| Sbjct 839 TCAGAATAGTCCGCGATGGTCTGTTCGATCTATGAAGAAATCTCT-GATTGATCAGAATG 897 Query 923 GTTTGGAGAGCGAAGTGTTGGATGGAGATTCGATACTTCAGCATCTAAATAGACAGGTTA 982 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 898 GTTCGGAGAGCGAAGTGTTGGATGGAGATTCGATACTTCAGCATCTAAATAGACAGGTTA 957 Query 983 GATTGGATCGCAAGTCGTTGATGGATTTGTATATGGAGTTAGATGAAGAGAGGAGTGCTT 1042 ||||||| || ||||| |||||||||||||| ||||||||||| |||||||||||||||| Sbjct 958 GATTGGACCGTAAGTCATTGATGGATTTGTACATGGAGTTAGACGAAGAGAGGAGTGCTT 1017 Query 1043 CAGCTGTTGCAGCAAACAATGCAATGGCTATGATCACAAGACTTCAAGCAGAGAAAGCTG 1102 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1018 CAGCTGTTGCAGCAAACAATGCAATGGCTATGATCACAAGACTTCAAGCCGAGAAAGCTG 1077 Query 1103 CGGTTCAAATGGAGGCATTGCAGTATCAGAGAATGATGGATGAGCAAGCAGAATATGATC 1162 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1078 CGGTTCAAATGGAGGCATTGCAGTATCAGAGAATGATGGATGAGCAAGCGGAATATGATC 1137 Query 1163 AAGAAGCTTTGCAGTCTATGAATGGTTTGTTGGTTAAGAGAGAAGAGGAAATGAAAGAGC 1222 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1138 AAGAAGCTTTGCAGTCTATGAATGGCTTGTTGGTTAAGAGAGAAGAGGAAATGAAAGAGC 1197 Query 1223 TTGAAGCTGGAATTGAAGTTTATAGATTGAGATATGGATTGTTGAGAGAAGAAAGAGGAG 1282 ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1198 TTGAAGCTGAAATTGAAGTTTATAGATTGAGATATGGATTGTTGAGAGAAG---GAGGAG 1254 Query 1283 AAGCAGAGGAGTTTCTTGATGAAGAAACTAAACCGGTTTCAGATTTGCCTGTTTGTTCTT 1342 ||||||| ||||||||||||||||| ||||||||||| ||||| |||||||||||||||| Sbjct 1255 AAGCAGAAGAGTTTCTTGATGAAGAGACTAAACCGGTCTCAGAATTGCCTGTTTGTTCTT 1314 Query 1343 CAAATCATGAAGAAGATTTGGAACAAATGAAAGATTCAGCTGAGGATTCTATAGGCAATA 1402 ||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||| | Sbjct 1315 CAAATCATGAAGAAGATTTAGAACAAATGAAAGATTCAGCTGAGGATTCTAAAGCCAACA 1374 Query 1403 ATGGTGTGATGATTATAGAGGAAGAAAAAGAGAATGGAAGCAGAAAAGATATGTTAGTGA 1462 ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1375 ATGGTGTGATGATCATAGAGGAAGAAAAAGAGAATGGAAGCAGAAAAGATGTGTTAGTGA 1434 Query 1463 AGGAAATTTCAGAGATTACAGAGAGACTAAATGCAATTGAATCAAAAGGTGAATTGTTGC 1522 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1435 AGGAAATCTCAGAGATTACAGAGAGACTAAATGCAATTGAATCAAAAGGTGAATTGTTGC 1494 Query 1523 AGCAAATTTCAGATGTTTTAGATGTTAGTGAAGGAGAAGCAATTCTATTACAGATATCTC 1582 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1495 AGCAAATTTCAGATGTTTTAGATGTTAGTGAAGGAGAAGCAATTCTATTACAGATATCTC 1554 Query 1583 AGAATCTGCATATGCTTCGTAGTTTCATTGAAATGCCAACAGAATCATGAATCTGTTT-- 1640 | |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| Sbjct 1555 AAAATCTGCATATGCTTCGTAGTTTCATTGAAATGCCATCAGAATCATGAATCTCTTTAC 1614 Query 1641 T-ACTTAAGAAATCAAAACAACATCCTTGT-TCTAATCTGTATGTAACTGATACTGACAG 1698 | |||||||| |||||| |||||||||||| || ||||||||||||||||||||||||| Sbjct 1615 TTACTTAAGATATCAAATCAACATCCTTGTATCAAATCTGTATGTAACTGATACTGACAA 1674 Query 1699 TTTT 1702 |||| Sbjct 1675 TTTT 1678 > Ahg316417 jgi|Araly1|316417|fgenesh1_pm.C_scaffold_2001450 Length=1632 Score = 377 bits (204), Expect = 1e-103 Identities = 377/459 (82%), Gaps = 18/459 (4%) Strand=Plus/Plus Query 57 AATGTCTAACCGTTCCTTCAAG-AATTTCATAGAAGAAGAACTTGGAACATTC--CCACA 113 ||||||||| ||||| |||||| ||||| | ||| ||||||| ||| | || || || Sbjct 57 AATGTCTAAACGTTCTTTCAAGAAATTT-GTGGAACAAGAACTCGGATC--TCGTCCTCA 113 Query 114 GTTCTTAATCTACGCTCTTCTTGAATGGATCCTCATCATTATCCTCTTCATCGATGGCTT 173 ||| | |||||| | |||||||||||| ||||||| |||||||||||||||| ||| | Sbjct 114 TTTCCTCATCTACACGGTTCTTGAATGGAGCCTCATCGTTATCCTCTTCATCGACGGCAT 173 Query 174 CCTCG-CTTTCTTCTCTAACCAA-ATCGCTAAATTCTTTGACCTCAAAATCCCCTGTCTT 231 ||| ||||| | || |||||| || || |||||||| |||||||| || || |||||| Sbjct 174 AATCGCCTTTC-TATCAAACCAATAT-GCCAAATTCTTCGACCTCAACATTCCTTGTCTT 231 Query 232 CTCTGCACTAGACTCGACCATGTTCTTGTCAGC-AGAAACCCT-GATTTCTATTACAACG 289 |||||||| ||| ||||||| |||| ||| | ||| ||||| || ||||||||||| | Sbjct 232 CTCTGCACCAGAATCGACCACATTCTCGTC-CCTAGAGACCCTCGA-TTCTATTACAATG 289 Query 290 ACTCGATATGCGA-TGCTCACAAGAAGAATGTCTCATCTCTCGCTTACTGTCATGTGCAC 348 | || || ||||| | ||||||||||||| || || ||||| ||||| || ||||| || Sbjct 290 AGTCAATCTGCGACT-CTCACAAGAAGAAAGTATCTTCTCTTGCTTATTGCCATGTCCAT 348 Query 349 AAGAAACTCTCTGAGATCAAACGTATGTGTGAAGGATGTCTTCTCTCTTTCGCTACCGAG 408 ||||| || ||||||||||||| |||||||||||||||||||||||||||||| |||||| Sbjct 349 AAGAAGCTATCTGAGATCAAACATATGTGTGAAGGATGTCTTCTCTCTTTCGCCACCGAG 408 Query 409 AAAGAAACAGA-TGTTGATACTTACAAGTCTCTTATTGGAATCTTGCATAAGGATCTTGA 467 |||||| | || ||| |||||||| |||||||| ||||| ||||| || || ||||| || Sbjct 409 AAAGAATCTGACTGT-GATACTTATAAGTCTCTCATTGGCATCTTACACAAAGATCTCGA 467 Query 468 GCTTCTTATCGACGATGAACGTGAGCTTCAATTGGCGTT 506 |||||| || ||||||||||| ||||||| |||||||| Sbjct 468 GCTTCTCATTGACGATGAACGAGAGCTTCCCTTGGCGTT 506 Score = 315 bits (170), Expect = 9e-85 Identities = 408/520 (78%), Gaps = 28/520 (5%) Strand=Plus/Plus Query 799 GACAGAACTCCGAGTTTTGTAAAAGGAGGTAATAAGTTCTTTGGCATTCCGCTTTCTGAC 858 |||||||| ||||| ||||| | ||||||||| ||||| ||||| || || || ||||| Sbjct 736 GACAGAACACCGAGCTTTGTTAGAGGAGGTAACAAGTTTTTTGGGATCCCTCTGTCTGAT 795 Query 859 TCGGCT-CAGAATAGTCCGCGATGGTCTGTTCGATCAATGAAGAAA--TC-TTTCG-T-T 912 |||| | || |||||||| |||||||| |||||||| | |||||| || ||| | | Sbjct 796 TCGG-TGCAAAATAGTCCACGATGGTCCGTTCGATCTCTTAAGAAATCTCTTTTGGATAA 854 Query 913 GATC--AGAATGGTTTGGAGAGC-GAAGTGT-TGGATGGAGATTCGATACTTCAGCATCT 968 || | |||||| || ||| | | | || | | || || || || ||| | || || Sbjct 855 GA-CAGAGAATGCTTCGGACA-CGGCAG-ATCCAAACGGTGAATCCATCCTTAATCAGCT 911 Query 969 AAATAGACAGGTTAGATTGGATC--GCAAGTCGTTGATGGATTTGTATATGGAGTTAGAT 1026 || | | ||||| | ||||| | | ||||| | || ||||||||||||||||||||| Sbjct 912 CAAGAAAGAGGTTCGCTTGGA-CAAG-AAGTCACTCATTGATTTGTATATGGAGTTAGAT 969 Query 1027 GAAGAGAGGAGTGCTTCAGCTGTTGCAGCAAAC-AATGCAATGGCTATGATCACAAGACT 1085 |||||||| |||||||||||||||||||| ||| || || |||||||||||||| || || Sbjct 970 GAAGAGAGAAGTGCTTCAGCTGTTGCAGCCAACGAA-GCGATGGCTATGATCACGAGGCT 1028 Query 1086 TCAAGCAGAGAAAGCTGCGGTTCAAATGGAGGCATTGCAGTATCAGAGAATGATGGATGA 1145 |||||| ||||||||||| |||||||||||||| |||||||| || |||||||||||||| Sbjct 1029 TCAAGCCGAGAAAGCTGCTGTTCAAATGGAGGCTTTGCAGTACCAAAGAATGATGGATGA 1088 Query 1146 GCAAGCAGAATATGATCAAGAAGCTTTGCAGTCTATGAATGGTTTGTTGGTTAAGAGAGA 1205 |||||||| ||||| ||||||||||||||||| |||| | |||| ||||| || Sbjct 1089 ACAAGCAGAGTATGACCAAGAAGCTTTGCAGTCGATGAGTACCGAATTGGCGAAGAGGGA 1148 Query 1206 AGAGGAAATGAAAGAGCTTGAAGCTGGAATT-GAAGTTTATAGATTGAGATATGGATTGT 1264 ||||||||||| ||||||||||||| | || || | ||| ||| || ||||||| || Sbjct 1149 GGAGGAAATGAAGGAGCTTGAAGCTG-AGTTTGAGGCTTACAGAGAGAAATATGGAA-GT 1206 Query 1265 T-GAGAGAAGAAAGAGGA-G-AAGCAGAGGAGTTTCTTGA 1301 | || ||| ||| || || | ||| ||| ||||||| ||| Sbjct 1207 TTGACAGATGAA-GAAGATGCAAG-AGAAGAGTTTCATGA 1244 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64981957970 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5