BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G18990.1
Length=1732
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472122 jgi|Araly1|472122|fgenesh2_kg.1__2076__AT1G18990.1 2638 0.0
Ahg316417 jgi|Araly1|316417|fgenesh1_pm.C_scaffold_2001450 377 1e-103
> Ahg472122 jgi|Araly1|472122|fgenesh2_kg.1__2076__AT1G18990.1
Length=1678
Score = 2638 bits (1428), Expect = 0.0
Identities = 1601/1684 (95%), Gaps = 13/1684 (1%)
Strand=Plus/Plus
Query 26 TATCTTCGTGATCGCTTTTTGCAATCACAATAATGTCTAACCGTTCCTTCAAGAATTTCA 85
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TATCTTCGTGATCGCTTCTTGCAATCACAATAATGTCTAACCGTTCCTTCAAGAATTTCA 60
Query 86 TAGAAGAAGAACTTGGAACATTCCCACAGTTCTTAATCTACGCTCTTCTTGAATGGATCC 145
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 61 TAGAAGAAGAACTTGGAACATTCCCGCAGTTCTTAATCTACGCTCTTCTTGAATGGATCC 120
Query 146 TCATCATTATCCTCTTCATCGATGGCTTCCTCGCTTTCTTCTCTAACCAAATCGCTAAAT 205
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 121 TCATCATTATCCTCTTCATTGATGGCTTCCTTGCTTTCTTCTCTAACCAAATCGCTAAAT 180
Query 206 TCTTTGACCTCAAAATCCCCTGTCTTCTCTGCACTAGACTCGACCATGTTCTTGTCAGCA 265
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 181 TCTTTGACCTTAAAATCCCCTGTCTTCTCTGCACTAGACTCGACCATGTTCTTGTCAGAA 240
Query 266 GAAACCCTGATTTCTATTACAACGACTCGATATGCGATGCTCACAAGAAGAATGTCTCAT 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GAAACCCTGATTTCTATTACAACGACTCGATATGCGATGCTCACAAGAAGAATGTCTCAT 300
Query 326 CTCTCGCTTACTGTCATGTGCACAAGAAACTCTCTGAGATCAAACGTATGTGTGAAGGAT 385
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 301 CTCTCGCTTACTGTCATGTTCACAAGAAACTCTCTGAGATCAAACGAATGTGTGAAGGAT 360
Query 386 GTCTTCTCTCTTTCGCTACCGAGAAAGAAACAGATGTTGATACTTACAAGTCTCTTATTG 445
||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 361 GTCTTCTTTCTTTCGCCACCGAGAAAGAATCAGATGTTGATACTTACAAGTCTCTTATTG 420
Query 446 GAATCTTGCATAAGGATCTTGAGCTTCTTATCGACGATGAACGTGAGCTTCAATTGGCGT 505
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 421 GAATCTTACATAAGGATCTTGAGCTTCTTATCGACGATGAACGTGAGCTTCAATTGGCTT 480
Query 506 TTCCGGTTGCGGGTTCGAAGAAAGATGAAAACTTCTATCAGGTTGAGAACAGAACTAACA 565
|||| | ||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 481 TTCCAGCTGCGGGTTCGAAGAAAGATGAAAACTTCTATCAGGTTGATCAGAGAACTAACA 540
Query 566 ATAGCAATGACAGGTTTCAGAGGCAGCAACGTTGTTCTTGTTGTGGGCAGATAATGAAGC 625
||||||||||||||||||| | ||||||||||||||||||||||||||| || ||||||
Sbjct 541 ATAGCAATGACAGGTTTCACAAACAGCAACGTTGTTCTTGTTGTGGGCAGCTATTGAAGC 600
Query 626 TGAAATCCGATAAACCTAAGAGCAATAATCAATCTTTTTTCGGAGCTCCTAGTCCATCTC 685
|||||||||| ||||| |||| |||||| |||||||| |||| |||||||||||| ||||
Sbjct 601 TGAAATCCGAAAAACCGAAGAACAATAACCAATCTTTCTTCGCAGCTCCTAGTCCGTCTC 660
Query 686 CTAGAGTTTCATTTAACCAAAGAACTTTGGATTTGTCTAACATTAAATACACGGATTTGC 745
||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
Sbjct 661 CTAGAGTTTCATTCAATCAAAGAACTTTGGATTTGTCTAACATTAAATACACGGATTCAC 720
Query 746 CTGAGGATGATGATGCT-TTGAACACGAAAGGCGCTTC-GTTGGATGCAGTTGATGACAG 803
| ||||||||||||||| || ||||||||||||||||| | ||||| |||||||||||||
Sbjct 721 CCGAGGATGATGATGCTGTT-AACACGAAAGGCGCTTCAG-TGGATTCAGTTGATGACAG 778
Query 804 AACTCCGAGTTTTGTAAAAGGAGGTAATAAGTTCTTTGGCATTCCGCTTTCTGACTCGGC 863
||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| |||||
Sbjct 779 AACTCCGAGTTTTGTTAAAGGAGGCAATAAATTCTTTGGCATTCCGCTTTCTGATTCGGC 838
Query 864 TCAGAATAGTCCGCGATGGTCTGTTCGATCAATGAAGAAATCTTTCG-TTGATCAGAATG 922
|||||||||||||||||||||||||||||| |||||||||||| | | ||||||||||||
Sbjct 839 TCAGAATAGTCCGCGATGGTCTGTTCGATCTATGAAGAAATCTCT-GATTGATCAGAATG 897
Query 923 GTTTGGAGAGCGAAGTGTTGGATGGAGATTCGATACTTCAGCATCTAAATAGACAGGTTA 982
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 GTTCGGAGAGCGAAGTGTTGGATGGAGATTCGATACTTCAGCATCTAAATAGACAGGTTA 957
Query 983 GATTGGATCGCAAGTCGTTGATGGATTTGTATATGGAGTTAGATGAAGAGAGGAGTGCTT 1042
||||||| || ||||| |||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 958 GATTGGACCGTAAGTCATTGATGGATTTGTACATGGAGTTAGACGAAGAGAGGAGTGCTT 1017
Query 1043 CAGCTGTTGCAGCAAACAATGCAATGGCTATGATCACAAGACTTCAAGCAGAGAAAGCTG 1102
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1018 CAGCTGTTGCAGCAAACAATGCAATGGCTATGATCACAAGACTTCAAGCCGAGAAAGCTG 1077
Query 1103 CGGTTCAAATGGAGGCATTGCAGTATCAGAGAATGATGGATGAGCAAGCAGAATATGATC 1162
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1078 CGGTTCAAATGGAGGCATTGCAGTATCAGAGAATGATGGATGAGCAAGCGGAATATGATC 1137
Query 1163 AAGAAGCTTTGCAGTCTATGAATGGTTTGTTGGTTAAGAGAGAAGAGGAAATGAAAGAGC 1222
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1138 AAGAAGCTTTGCAGTCTATGAATGGCTTGTTGGTTAAGAGAGAAGAGGAAATGAAAGAGC 1197
Query 1223 TTGAAGCTGGAATTGAAGTTTATAGATTGAGATATGGATTGTTGAGAGAAGAAAGAGGAG 1282
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1198 TTGAAGCTGAAATTGAAGTTTATAGATTGAGATATGGATTGTTGAGAGAAG---GAGGAG 1254
Query 1283 AAGCAGAGGAGTTTCTTGATGAAGAAACTAAACCGGTTTCAGATTTGCCTGTTTGTTCTT 1342
||||||| ||||||||||||||||| ||||||||||| ||||| ||||||||||||||||
Sbjct 1255 AAGCAGAAGAGTTTCTTGATGAAGAGACTAAACCGGTCTCAGAATTGCCTGTTTGTTCTT 1314
Query 1343 CAAATCATGAAGAAGATTTGGAACAAATGAAAGATTCAGCTGAGGATTCTATAGGCAATA 1402
||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||| |
Sbjct 1315 CAAATCATGAAGAAGATTTAGAACAAATGAAAGATTCAGCTGAGGATTCTAAAGCCAACA 1374
Query 1403 ATGGTGTGATGATTATAGAGGAAGAAAAAGAGAATGGAAGCAGAAAAGATATGTTAGTGA 1462
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1375 ATGGTGTGATGATCATAGAGGAAGAAAAAGAGAATGGAAGCAGAAAAGATGTGTTAGTGA 1434
Query 1463 AGGAAATTTCAGAGATTACAGAGAGACTAAATGCAATTGAATCAAAAGGTGAATTGTTGC 1522
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1435 AGGAAATCTCAGAGATTACAGAGAGACTAAATGCAATTGAATCAAAAGGTGAATTGTTGC 1494
Query 1523 AGCAAATTTCAGATGTTTTAGATGTTAGTGAAGGAGAAGCAATTCTATTACAGATATCTC 1582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1495 AGCAAATTTCAGATGTTTTAGATGTTAGTGAAGGAGAAGCAATTCTATTACAGATATCTC 1554
Query 1583 AGAATCTGCATATGCTTCGTAGTTTCATTGAAATGCCAACAGAATCATGAATCTGTTT-- 1640
| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 1555 AAAATCTGCATATGCTTCGTAGTTTCATTGAAATGCCATCAGAATCATGAATCTCTTTAC 1614
Query 1641 T-ACTTAAGAAATCAAAACAACATCCTTGT-TCTAATCTGTATGTAACTGATACTGACAG 1698
| |||||||| |||||| |||||||||||| || |||||||||||||||||||||||||
Sbjct 1615 TTACTTAAGATATCAAATCAACATCCTTGTATCAAATCTGTATGTAACTGATACTGACAA 1674
Query 1699 TTTT 1702
||||
Sbjct 1675 TTTT 1678
> Ahg316417 jgi|Araly1|316417|fgenesh1_pm.C_scaffold_2001450
Length=1632
Score = 377 bits (204), Expect = 1e-103
Identities = 377/459 (82%), Gaps = 18/459 (4%)
Strand=Plus/Plus
Query 57 AATGTCTAACCGTTCCTTCAAG-AATTTCATAGAAGAAGAACTTGGAACATTC--CCACA 113
||||||||| ||||| |||||| ||||| | ||| ||||||| ||| | || || ||
Sbjct 57 AATGTCTAAACGTTCTTTCAAGAAATTT-GTGGAACAAGAACTCGGATC--TCGTCCTCA 113
Query 114 GTTCTTAATCTACGCTCTTCTTGAATGGATCCTCATCATTATCCTCTTCATCGATGGCTT 173
||| | |||||| | |||||||||||| ||||||| |||||||||||||||| ||| |
Sbjct 114 TTTCCTCATCTACACGGTTCTTGAATGGAGCCTCATCGTTATCCTCTTCATCGACGGCAT 173
Query 174 CCTCG-CTTTCTTCTCTAACCAA-ATCGCTAAATTCTTTGACCTCAAAATCCCCTGTCTT 231
||| ||||| | || |||||| || || |||||||| |||||||| || || ||||||
Sbjct 174 AATCGCCTTTC-TATCAAACCAATAT-GCCAAATTCTTCGACCTCAACATTCCTTGTCTT 231
Query 232 CTCTGCACTAGACTCGACCATGTTCTTGTCAGC-AGAAACCCT-GATTTCTATTACAACG 289
|||||||| ||| ||||||| |||| ||| | ||| ||||| || ||||||||||| |
Sbjct 232 CTCTGCACCAGAATCGACCACATTCTCGTC-CCTAGAGACCCTCGA-TTCTATTACAATG 289
Query 290 ACTCGATATGCGA-TGCTCACAAGAAGAATGTCTCATCTCTCGCTTACTGTCATGTGCAC 348
| || || ||||| | ||||||||||||| || || ||||| ||||| || ||||| ||
Sbjct 290 AGTCAATCTGCGACT-CTCACAAGAAGAAAGTATCTTCTCTTGCTTATTGCCATGTCCAT 348
Query 349 AAGAAACTCTCTGAGATCAAACGTATGTGTGAAGGATGTCTTCTCTCTTTCGCTACCGAG 408
||||| || ||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 349 AAGAAGCTATCTGAGATCAAACATATGTGTGAAGGATGTCTTCTCTCTTTCGCCACCGAG 408
Query 409 AAAGAAACAGA-TGTTGATACTTACAAGTCTCTTATTGGAATCTTGCATAAGGATCTTGA 467
|||||| | || ||| |||||||| |||||||| ||||| ||||| || || ||||| ||
Sbjct 409 AAAGAATCTGACTGT-GATACTTATAAGTCTCTCATTGGCATCTTACACAAAGATCTCGA 467
Query 468 GCTTCTTATCGACGATGAACGTGAGCTTCAATTGGCGTT 506
|||||| || ||||||||||| ||||||| ||||||||
Sbjct 468 GCTTCTCATTGACGATGAACGAGAGCTTCCCTTGGCGTT 506
Score = 315 bits (170), Expect = 9e-85
Identities = 408/520 (78%), Gaps = 28/520 (5%)
Strand=Plus/Plus
Query 799 GACAGAACTCCGAGTTTTGTAAAAGGAGGTAATAAGTTCTTTGGCATTCCGCTTTCTGAC 858
|||||||| ||||| ||||| | ||||||||| ||||| ||||| || || || |||||
Sbjct 736 GACAGAACACCGAGCTTTGTTAGAGGAGGTAACAAGTTTTTTGGGATCCCTCTGTCTGAT 795
Query 859 TCGGCT-CAGAATAGTCCGCGATGGTCTGTTCGATCAATGAAGAAA--TC-TTTCG-T-T 912
|||| | || |||||||| |||||||| |||||||| | |||||| || ||| | |
Sbjct 796 TCGG-TGCAAAATAGTCCACGATGGTCCGTTCGATCTCTTAAGAAATCTCTTTTGGATAA 854
Query 913 GATC--AGAATGGTTTGGAGAGC-GAAGTGT-TGGATGGAGATTCGATACTTCAGCATCT 968
|| | |||||| || ||| | | | || | | || || || || ||| | || ||
Sbjct 855 GA-CAGAGAATGCTTCGGACA-CGGCAG-ATCCAAACGGTGAATCCATCCTTAATCAGCT 911
Query 969 AAATAGACAGGTTAGATTGGATC--GCAAGTCGTTGATGGATTTGTATATGGAGTTAGAT 1026
|| | | ||||| | ||||| | | ||||| | || |||||||||||||||||||||
Sbjct 912 CAAGAAAGAGGTTCGCTTGGA-CAAG-AAGTCACTCATTGATTTGTATATGGAGTTAGAT 969
Query 1027 GAAGAGAGGAGTGCTTCAGCTGTTGCAGCAAAC-AATGCAATGGCTATGATCACAAGACT 1085
|||||||| |||||||||||||||||||| ||| || || |||||||||||||| || ||
Sbjct 970 GAAGAGAGAAGTGCTTCAGCTGTTGCAGCCAACGAA-GCGATGGCTATGATCACGAGGCT 1028
Query 1086 TCAAGCAGAGAAAGCTGCGGTTCAAATGGAGGCATTGCAGTATCAGAGAATGATGGATGA 1145
|||||| ||||||||||| |||||||||||||| |||||||| || ||||||||||||||
Sbjct 1029 TCAAGCCGAGAAAGCTGCTGTTCAAATGGAGGCTTTGCAGTACCAAAGAATGATGGATGA 1088
Query 1146 GCAAGCAGAATATGATCAAGAAGCTTTGCAGTCTATGAATGGTTTGTTGGTTAAGAGAGA 1205
|||||||| ||||| ||||||||||||||||| |||| | |||| ||||| ||
Sbjct 1089 ACAAGCAGAGTATGACCAAGAAGCTTTGCAGTCGATGAGTACCGAATTGGCGAAGAGGGA 1148
Query 1206 AGAGGAAATGAAAGAGCTTGAAGCTGGAATT-GAAGTTTATAGATTGAGATATGGATTGT 1264
||||||||||| ||||||||||||| | || || | ||| ||| || ||||||| ||
Sbjct 1149 GGAGGAAATGAAGGAGCTTGAAGCTG-AGTTTGAGGCTTACAGAGAGAAATATGGAA-GT 1206
Query 1265 T-GAGAGAAGAAAGAGGA-G-AAGCAGAGGAGTTTCTTGA 1301
| || ||| ||| || || | ||| ||| ||||||| |||
Sbjct 1207 TTGACAGATGAA-GAAGATGCAAG-AGAAGAGTTTCATGA 1244
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64981957970
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5