BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19010.1
Length=1253
Score E
Sequences producing significant alignments: (Bits) Value
Ahg335156 jgi|Araly1|335156|fgenesh1_pg.C_scaffold_1001721 1435 0.0
> Ahg335156 jgi|Araly1|335156|fgenesh1_pg.C_scaffold_1001721
Length=954
Score = 1435 bits (777), Expect = 0.0
Identities = 903/963 (94%), Gaps = 12/963 (1%)
Strand=Plus/Plus
Query 123 ATGACTGACCCAGAGAAATTAACCGCCTTGAAGAAGGCTTACGCTGAGACAATACTGAAC 182
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGACCGACCCAGAGAAATTAACCGCCTTGAAGAAGGCTTACGCTGAGACAATACTGAAC 60
Query 183 ACAGCCAAGGAAGCGGCGGCGCGTGTTATGATTACTGAGAGGAAAGCGCGTGGGTATCAG 242
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 61 ACAGCCAAGGAAGCGGCGGCGCGTGTTATGATTACTGAGAAGAAAGCGCGTGAGTATCAG 120
Query 243 CAAGAGCTTGCGTCTGTTAGAGATGAGGCTCTTCGTGCATGTCTTAGGCTTAAACAGATA 302
|||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 121 CAAGAGCTTGCGGCTGTTAGAGATGAGGCTCTCCGTACATGTCTTAGGCTTAAACAGATG 180
Query 303 TATGATTCCAAGGTCAAGGAGGCAGAAATGATATCTTTGCAGAAGCAGCAAAAGATTGAG 362
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 181 TATGATTCCAAGGTAAAGGAGGCAGAAATGATATCTTTGAAGAAGCAGCAAAAGATTGAG 240
Query 363 GAACTTGAAGCTCAACTTGGAGAAGCTGAAGATATAGTAGGAGAGTTAAGGACGGAGTTA 422
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 241 GAACTTGAAGCTCAACTTGGTGAAGCTGAAGATATAGTAGGAGAGCTAAGGACGGAGTTA 300
Query 423 CGAGAATCGCGGTATCTCCTGGAGAAATTGGCAAATGGTTGTCAAACAAATCTTAGCAAA 482
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 301 CGAGAATCTCGGTATCTCCTGGAGAAATTGACAAATGGTTGTCAAACAAATCTTAGCAAA 360
Query 483 GAGGAGAAAGCCCCCAATGAAGCAGTTTCTTTAGAAGTGCGTGAGGACTCTAGCAACCAC 542
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GAGGAGAAAACCCCCAATGAAGCAGTTTCTTTAGAAGTGCGTGAGGACTCTAGCAACCAT 420
Query 543 GAGAGATCAGTTGTGGCTAGTGTTATTAAACCACATATGAGTGACAGAGATCTTA-GTAT 601
||||||||||| ||||||| || ||||||| ||||||||||||||||||| ||| ||||
Sbjct 421 GAGAGATCAGTAGTGGCTAATGGGATTAAACTACATATGAGTGACAGAGAT-TTAAGTAT 479
Query 602 TAACCGGTGTTCTTATAAAGAGAATAAAGATCCTTGTCTTTATACTCTTCCTTCCATACT 661
||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 480 TAATCGGTGTTCTTATAAAGAGAATAAAGATCCTTGTCTTCATACGCTTCCTTCCATACT 539
Query 662 AAGTAGATGCAGAGAAGCTGAGGTGGTAGAAAGGAACACTAT-CAATGGAGATTGTGCTG 720
||||||| ||||||| ||||||| | | |||||||||| | |||||||||||||||||
Sbjct 540 AAGTAGACGCAGAGATGCTGAGGCGTTGGAAAGGAACA-TGGGCAATGGAGATTGTGCTG 598
Query 721 ATGTGGAATCACTTACAGAAGCAAGGAAGGAAGAAGCGAAAGAGAATGATATTGAGCTTT 780
||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||
Sbjct 599 ATGTGGAATCACTTACAGAAGCAGGGAAGAAAGAAGAGAAAGAGAATGATATTGAGCTTT 658
Query 781 CTACTACACCTTTGTCGCCTTCTGAGAAAC-AGTGTATCAAATTCTCGTATAAGAGGAAG 839
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 659 CTACTACACCTTTGTCGCCTTCTGAGAAACCA-TGTATCAAATTCTCGTATAAGAGGAAG 717
Query 840 CATAATAAGGATGGAAGTAACAGCCCTGAAGGAGGAGGTTCCTCCTCACAAGATGATGAT 899
| | || | | || ||||||||||||||||||||||||||||||||||||||||
Sbjct 718 CGCAGCAAC-A-GCAA----CAGCCCTGAAGGAGGAGGTTCCTCCTCACAAGATGATGAT 771
Query 900 GACGACGATGAAAGCAGAAGCAGGAGACATAAGACTGGTGAGAAAGACAACGCGTATTTG 959
|| || ||||||||||||| ||||||||| ||||||||||||||||||||||| || |||
Sbjct 772 GATGATGATGAAAGCAGAAACAGGAGACAGAAGACTGGTGAGAAAGACAACGCTTACTTG 831
Query 960 GATTCTTTCACCAGCACTGAACCATCTCGTGATAGTCGACGTGTAGCTCAGGTCGCTCGT 1019
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 GATTCTTTCACCAGTACTGAACCATCTCGTGATAGTCGACGTGTAGCTCAGGTCGCTCGT 891
Query 1020 CAGCTTTTACCATTCTCAGAGAAGAAAGGGTTGCAGCAGAGCCAATGTGATGATGTTCCT 1079
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 892 CAGCTTTTACCATTCTCAGAGAAGAAAGTGTTGCAGCAGAGCCAATGTGATGATGTCCCT 951
Query 1080 TGA 1082
|||
Sbjct 952 TGA 954
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46814942076
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5