BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G19020.1

Length=525
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg920844 jgi|Araly1|920844|scaffold_102125.1                        427    3e-119


> Ahg920844 jgi|Araly1|920844|scaffold_102125.1
Length=298

 Score =  427 bits (231),  Expect = 3e-119
 Identities = 269/287 (94%), Gaps = 4/287 (1%)
 Strand=Plus/Plus

Query  48   TTTGAG-AAGACGATATACAATAATGAACGGAACATCGTGGGCTGACCAGTGGGACAATA  106
            |||||| |||| |||||||   ||||||||||||||||||||||||||||||||||||||
Sbjct  1    TTTGAGAAAGAGGATATAC---AATGAACGGAACATCGTGGGCTGACCAGTGGGACAATA  57

Query  107  GCGGCGACTCTGCCAAAGGAGGCCGAATCGGCAGCGGCGCCGTCGTGAGAAGCAGCGGAA  166
            |||| | |||||||| |||||| | ||||||||| |||||||||||||| ||||||||||
Sbjct  58   GCGGAGGCTCTGCCAGAGGAGGACAAATCGGCAGTGGCGCCGTCGTGAGTAGCAGCGGAA  117

Query  167  GTGGAGCAACGTCAAACACGACCAAGTACAAGGAGAAAATGGGACAAGGGTTAGACAAAA  226
            |||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||
Sbjct  118  GTGGAGCAACGTCAAACACGGCTAAGTACAAGGAGAAAATGGGACAAGGATTAGACAAAA  177

Query  227  CCAAAGCTGTAGCTTCTTCTGGTTTTAAGAAGCTCAAGACTGGTTCTGCTATTGGTTTTC  286
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  178  CAAAAGCTGTAGCTTCTTCTGGTTTTAAGAAGCTCAAGACTGGTTCTGCTATTGGTTTTC  237

Query  287  GTTGGGTCAAGGACAAGTATCACAAAACCACACACAAACAATAAAGA  333
            |||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct  238  GTTGGGTCAAAGACAAGTATCACAAAACCACACACAAATAATAAAGA  284



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19115950089


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5