BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19025.1
Length=1856
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472127 jgi|Araly1|472127|fgenesh2_kg.1__2081__AT1G19025.1 2645 0.0
> Ahg472127 jgi|Araly1|472127|fgenesh2_kg.1__2081__AT1G19025.1
Length=1820
Score = 2645 bits (1432), Expect = 0.0
Identities = 1661/1772 (94%), Gaps = 14/1772 (1%)
Strand=Plus/Plus
Query 1 AAAATTATCGGCGGAAGCAGAAACCCTAGTCATTGGTTATATCCGTCGCCGGCGTTAGAG 60
||||||||||||||||||||||||||||| ||| ||||| |||| |||||| ||||||||
Sbjct 1 AAAATTATCGGCGGAAGCAGAAACCCTAGCCATCGGTTACATCCATCGCCGCCGTTAGAG 60
Query 61 GGCCGTGATGTCGATAGAGATGCCAAGAGGTTTACCATTTGCCGTCGACACTTTTGGACC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGCCGTGATGTCGATAGAGATGCCAAGAGGTTTACCATTTGCCGTCGACACTTTTGGACC 120
Query 121 ATACACGGA-GACGAAGAGAAGAAAGAGACATCATTTCTTAACTCATGCTCATAAAGATC 179
||||||| | ||| ||||||| |||||||||||||||||||||||| ||||| |||||||
Sbjct 121 ATACACG-ACGACCAAGAGAATAAAGAGACATCATTTCTTAACTCACGCTCACAAAGATC 179
Query 180 ACACCGTTGGGGTTTCTCCTTCTAACATTGTCGTCTTCCCCATTTACTCTACTTCCCTCA 239
||||||| ||| |||||||||| ||||| ||||||||||| |||||||||||||||||||
Sbjct 180 ACACCGTCGGGATTTCTCCTTCCAACATCGTCGTCTTCCCAATTTACTCTACTTCCCTCA 239
Query 240 CCATCTCTCTTCTTCTTCAACGTTTCCCTCAGCTTGATGAGTCTTACTTCGTGAG-AGTT 298
|||||||||||||| |||||||| |||||||||||||||||||| ||||||||| | ||
Sbjct 240 CCATCTCTCTTCTTATTCAACGTCACCCTCAGCTTGATGAGTCTTTCTTCGTGAGGA-TT 298
Query 299 GAAATTGGTCAATCAGTGATTGTTGATGATCCTGATGGCGAGTTTAAAGTTACTGCTTTT 358
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 299 GAAATTGGGCAATCAGTGATTGTTGATGATCCTGATGGAGAGTTTAAAGTTACTGCTTTT 358
Query 359 GATGCTAATCATTGTCCTGGAGCCGTTATGTTCTTGTTTGAAGGAAGTTTTGGTAACATA 418
||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||| |||
Sbjct 359 GATGCCAATCATTGTCCTGGAGCCGTCATGTTCTTGTTTGAAGGAAGTTTCGGTAATATA 418
Query 419 CTTCACACTGGTGATTGTAGGCTTACACTAGATTGTCTACATAGTCTACCTGAGAAATAT 478
||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||
Sbjct 419 CTTCACACTGGTGATTGTAGGCTTACACTAGATTGCCTACAGAGTCTACCAGAGAAATAT 478
Query 479 GTTGGAAGAAGCCATGGCATGAAACCAAAATGCTCTCTTGGTTACATTTTCTTAGATTGT 538
||||||||||| ||||| || |||||||| | ||||| |||||||||||| ||||||
Sbjct 479 GTTGGAAGAAGACATGGTGTGTCTCCAAAATGTTGTCTTGATTACATTTTCTTGGATTGT 538
Query 539 ACATTTGGGAAATCATCTCACTCTCAGAGGTTTCCCACTAAGCATTCAGCTATTAGACAG 598
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 539 ACATTTGGGAAATCCTCTCACTCTCAGAGGTTTCCCAGTAAGCATTCAGCTATTAGACAG 598
Query 599 ATCATCAATTGCATATGGAACCACCCAGATGCACCAGTTGTATATCTTGCTTGTGATATG 658
| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 599 GTTATCAATTGCATATGGAACCATCCAGATGCACCAGTTGTATATCTTGCTTGTGATATG 658
Query 659 TTGGGACAAGAGGATGTTCTCTTAGAAGTTTCTAGAACGTTTGGCTCCAAGATTTATGTG 718
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 659 TTGGGACAAGAGGATGTTCTGTTAGAAGTTTCTAGAACGTTTGGCTCCAAGATTTATGTC 718
Query 719 GACAAAGCTACAAACTTGGAATGTTTCAGATCGTTAATGGTTATAGTTCCCGAAATTGTC 778
||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||
Sbjct 719 GACAAAGCTACAAACTTGGAATGTTTCAGATCGTTAATGGTAATTGTTCCTGAAATTGTC 778
Query 779 TCTGAAGATCCTTCTTCCAGGTTTCACATATTCAGTGGGTTCCCTAAACTGTATGAAAGA 838
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 779 TCTGAAGATCCTTCTTCCCGGTTTCACATATTCAGTGGGTTCCCTAAACTGTATGAAAGA 838
Query 839 ACAAGTGC-AAAGCTTGCTGAGGCAAGATCGAAACTTCAGAGTGAGCCTCTTATCATCCG 897
|||||||| ||| ||||||||||| ||||||||||||||||| || ||||||||||||||
Sbjct 839 ACAAGTGCGAAA-CTTGCTGAGGCCAGATCGAAACTTCAGAGCGAACCTCTTATCATCCG 897
Query 898 TCCTTCAGCTCAGTGGTATGTTTGTGATGATGAAGATGATTGGAAAAGTGGAAGCATTCA 957
||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 898 TCCTTCAGCGCAGTGGTATGTTTGTGATGACGAAGATGATTGGGAAAGTGGAAGCATTCA 957
Query 958 AAAGCAGAGAAAAGTTAGGTTTAGTGAAGCTGTCAAGGATGAGTTTGGCCTTTGGCATGT 1017
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 958 AAAGCAGAGAAAAGTTAGGTTTAGTGAAGCTGTCAAGGATGAGTTTGGTCTTTGGCATGT 1017
Query 1018 GTGTTACTCAATGCATTCATCCCGTGCAGAGTTGGAATCAGCGATGCAACTTCTTTCTCC 1077
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 1018 GTGTTACTCAATGCATTCATCCCGTGAAGAATTGGAATCAGCGATGCAACTTCTTTCTCC 1077
Query 1078 GAAATGGGTTGTATCAACAGTTCCTTCTTGTAGAGCAATGGAACTCAACTATGTGAAGAA 1137
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1078 GAAATGGGTTGTATCAACAGTTCCTTCTTGTAGAGCAATGGAACTAAACTATGTGAAGAA 1137
Query 1138 AAACTGTTTTATCAGTCGGTTTTCGCCTGATGATCCTTTCTGGAAGCTTCTAGACATCGA 1197
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1138 AAACTGTTTTATCAGTCGGTTTTCGCCTGATGACCCTTTCTGGAAGCTTCTAGACATCGA 1197
Query 1198 TATGGAAGCTTCTCCAGTTGCAGCAGCTGATACTCAAACTGTAGCTCTTAGTTGCTGTCT 1257
||||||| ||||||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct 1198 CATGGAAGTTTCTCCAGTTGCAGCAGCTGATACTCACACAGTAGCTCTTAGTTGTTGTCT 1257
Query 1258 CATGAGTGAACAGATTATTCTGGATTCGGGAAAATCGAAGTTAGAACCTGTGATAGAATC 1317
|||||||||| | || ||||||||||| | ||||| |||| |||||||||| || |||||
Sbjct 1258 CATGAGTGAAGAAATCATTCTGGATTCTGCAAAATTGAAGCTAGAACCTGTAATCGAATC 1317
Query 1318 GTCTAGCACGAAGAAGAAGCTTCTGAGTTTATCCCCTGAAAATAGTCTTCCTGTAACTCT 1377
|||||||||||||| |||||||||||||||||||||||||| | ||| |||||||||||
Sbjct 1318 TTCTAGCACGAAGAAAAAGCTTCTGAGTTTATCCCCTGAAAAGAATCTACCTGTAACTCT 1377
Query 1378 GTTTGGGAGAGCAAGGCAAAGTTCTCAGGAATGTGATCAACTACATGAGAGAAAAGTCAT 1437
||||||||||||||||| |||||||||||||| |||||||||||| ||| ||||||||||
Sbjct 1378 GTTTGGGAGAGCAAGGCTAAGTTCTCAGGAATCTGATCAACTACACGAGCGAAAAGTCAT 1437
Query 1438 ACACACTCAATGTGTATACACCAAAACCTCGCCGGTATTGGAAAAACTGAATGTAAAGGT 1497
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 1438 ACACACTCAATCTGTATACACCAAAACCTCGCCGGTATTGGAAAAGCTGAATGTACAGGA 1497
Query 1498 AGTAATTGAGCCTTTACAAGATGATACTAAAGAAGAAACAGTAGAGAAGGAATCTTGTAC 1557
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1498 AGTAATTGAGTCTTTACAAGATGATACTAAAGAAGAAACAATAGAGAAGGAATCTTGTAC 1557
Query 1558 AATCTTTTCTACTTCTACCTCAAAGGAGACTTGCAAGGATCTTAGTGGGGATTTGAGAAA 1617
|| |||||||||||| | || |||| |||||||||||||||||||||||||||||||
Sbjct 1558 AAGCTTTTCTACTTC-A----AA-GGAGGCTTGCAAGGATCTTAGTGGGGATTTGAGAAA 1611
Query 1618 GCTATACAGATCAATGAACGCACCTGTGCCTCGGCCGCTACCATCATTGATGGAGCTTAT 1677
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1612 GCTATACAGATCAATGAACGCACCTGTGCCTCGGCCGCTGCCATCATTGATGGAGCTCAT 1671
Query 1678 GAACGCTAGGAAACGCTCTCGGAATCACTTGAGTTTCTAGCTTGCGGTTGACATCTTAGC 1737
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 1672 GAACGCTAGGAAACGCTCTCGGAATCACTTGAGTTTCTAGCTTGCGTTTGACAGCTTAGC 1731
Query 1738 CTGATCACAT-CATTACAGTCTCAATCCCTTA 1768
|| ||||||| | | ||||||||||| |||||
Sbjct 1732 CTCATCACATTCGT-ACAGTCTCAATTCCTTA 1762
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69705148350
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5