BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19050.1
Length=807
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920848 jgi|Araly1|920848|scaffold_102129.1 963 0.0
> Ahg920848 jgi|Araly1|920848|scaffold_102129.1
Length=678
Score = 963 bits (521), Expect = 0.0
Identities = 627/677 (93%), Gaps = 11/677 (2%)
Strand=Plus/Plus
Query 71 TCTGCTCTCTTTTTTATTCTGAGTTTGACAATGGCGGTTGGTGAGGTCATGAGGATGGAG 130
||| ||||| ||||| |||||| |||||||||||||| |||||||| ||||||||||||
Sbjct 1 TCTTCTCTC-TTTTTCTTCTGA-CTTGACAATGGCGGTCGGTGAGGTTATGAGGATGGAG 58
Query 131 ATTCCCGCCGGTGGAGATTTGACTGTTACTACTCCGGAGTTGCATGTTCTTGCCGTCGAT 190
||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 59 ATTCCTGCCGGTGGAGAGTTGACAGTTACTACTCCGGAGTTGCATGTTCTTGCCGTCGAC 118
Query 191 GATAGTATTGTGGATCGTAAAGTCATCGAGAGGTTGCTTAGAATCTCTTCTTGTAAAGTG 250
|||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 119 GATAGTATCGTGGATCGTAAAGTTATCGAGAGGTTGCTTCGAATCTCTTCTTGTAAAGTG 178
Query 251 ACGACTGTAGAGAGTGGAACTAGGGCTTTGCAGTATCTTGGCTTAGATGGAGGCAAAGGG 310
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 179 ACGACTGTAGAGAGTGGGACTAGGGCTTTGCAGTATCTTGGCTTAGATGGAGGCAAAGGA 238
Query 311 GCTTCTAATCTTAAGGATTTGAAGGTGAATTTGATAGTGACGGATTACTCAATGCCAGGA 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 GCTTCTAATCTTAAGGATTTGAAGGTGAATTTGATAGTGACGGATTACTCAATGCCAGGA 298
Query 371 CTTTCAGGATATGATCTCCTTAAAAAGATTAAGGAATCTTCAGCATTCAGAGAAGTACCA 430
|| |||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 299 CTAACAGGATATGATCTCCTCAAGAAGATTAAGGAATCTTCAGCATTCAGAGAAGTACCA 358
Query 431 GTAGTGATTATGTCATCTGAGAACATCTTACCTCGTATACAAGAATGTCTCAAAGAAGGA 490
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 359 GTAGTGATTATGTCATCTGAGAACATCTTACCTCGTATAGAAGAATGTCTCAAGGAAGGA 418
Query 491 GCAGAGGAATTCTTGTTGAAACCGGTGAAGCTAGCAGATGTAAAGCGAATCAAACAACTT 550
|||||||||||| |||||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct 419 GCAGAGGAATTCCTGTTGAAACCAGTGAAGCTAGCAGATGTTAAGCGAATAAAACAACTT 478
Query 551 ATAATGAGGAATGAAGCTGAGGAATGCAAAATCTTAAGCCATTCTAACAAGAGAAAGCTT 610
||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 479 ATATTGAGAAATGAAGCTGAGGAATGCAAAACCTTAAGCCATTCTAACAAGAGAAAGCTT 538
Query 611 CAAGAAGACAGTGATACATCATCATCA--A-------GTCATGATGATACTTCTATCAAG 661
||||||||| ||||||||||||||||| | ||||||||||| ||||| |||||
Sbjct 539 CAAGAAGACTGTGATACATCATCATCATCATCATCAAGTCATGATGATTCTTCTGTCAAG 598
Query 662 GACTCTTCATGTTCAAAACGAATGAAATCAGAATCTGAAAACCTTTTTTCTCTACTTTGA 721
||| || ||| ||| ||||| ||||||||||||||||||||||||| ||||||| |||||
Sbjct 599 GACACTCCATCTTCTAAACGGATGAAATCAGAATCTGAAAACCTTTCTTCTCTATTTTGA 658
Query 722 ATTATATGTATAGAGGC 738
| ||||| |||||||||
Sbjct 659 AATATATATATAGAGGC 675
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29812121094
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5