BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19060.1
Length=864
Score E
Sequences producing significant alignments: (Bits) Value
Ahg311310 jgi|Araly1|311310|fgenesh1_pm.C_scaffold_1000090 342 2e-93
Ahg913311 jgi|Araly1|913311|Al_scaffold_0001_3565 257 8e-68
> Ahg311310 jgi|Araly1|311310|fgenesh1_pm.C_scaffold_1000090
Length=747
Score = 342 bits (185), Expect = 2e-93
Identities = 273/313 (87%), Gaps = 15/313 (5%)
Strand=Plus/Plus
Query 42 CCATGCGGCGAGGGATTACTGGCGTCGACTGAATGAATCCGA-G--T-GTTTCGATATCG 97
||||||||||||||||||||||||||||||| |||||||||| | | ||||||||||||
Sbjct 54 CCATGCGGCGAGGGATTACTGGCGTCGACTGGATGAATCCGAGGTATCGTTTCGATATCG 113
Query 98 AGGGAATCGAAGCACCACCAGGTGCCATTGCACTGATA-CCCTACGACTGTCAACTGCCT 156
||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 114 AGGGAATATTAGCACCACCAGGGGCCATTGCACTGATACCCCTACGACTGTCAACTGCCT 173
Query 157 AATAGTTTCCATCCTCTTCCTCTCTGGGTCAAGC-TT-T--ATGCTAGTGCGGGGCTTCA 212
|||||| |||||| ||| ||| |||||||| || | |||||||||||||||||||
Sbjct 174 AATAGTAGGCATCCTGAACCTGTCTTGGTCAAGCTTTATGCATGCTAGTGCGGGGCTTCA 233
Query 213 TCGATT-CAATATGTTGGAGGTTCTAGTTAATGAACGAAGTG-TCGGCAAGTTGAATATA 270
||| || ||||||||||||||||| ||||||||||| ||| | ||| | |||| | ||
Sbjct 234 TCG-TTACAATATGTTGGAGGTTCAAGTTAATGAACTAAG-GACCGGTAGGTTGGACATG 291
Query 271 ATCGTTCCGATTGCTAGACCTAAAGGTGTGACCACCAACGA-GCGCTTCATACCTTGTGA 329
||| |||||||||||||||||||||||||||||||||| || |||| |||||||||| ||
Sbjct 292 ATCATTCCGATTGCTAGACCTAAAGGTGTGACCACCAA-GAAGCGCCTCATACCTTGGGA 350
Query 330 TTGTTTTTCAGTG 342
| |||||||||||
Sbjct 351 TAGTTTTTCAGTG 363
Score = 313 bits (169), Expect = 2e-84
Identities = 204/220 (93%), Gaps = 6/220 (3%)
Strand=Plus/Plus
Query 569 GACTCAACGCCAAAACTGC--AGTGGTCTACATAACTTTTAAGGGATTGGCCAATGCTCG 626
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 483 GACTCAACGCCAAAAATGCTGTGTGGTCTACATAACTTTTAAGGGATTGGCCAATGCTCG 542
Query 627 TATTGCTGCTGGTGAGCATTATGAACGTAAAGCTATCATTAGAAGAATCTTCAATGAGCA 686
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 543 TATTGCTGCTGGTGAGCATGATGAACGTAAAGCTATCATTAGAAGAATCTTAAATGAGCA 602
Query 687 TACAGG-TCACTTGTCTCTCCTTGGTGATTTGATTGGAGAGAAA-AAGTTCGTAAACATT 744
|||||| | ||||||||||| |||||||||||||||||||||| || ||||||||||||
Sbjct 603 TACAGGAT-ACTTGTCTCTCATTGGTGATTTGATTGGAGAGAACGAA-TTCGTAAACATT 660
Query 745 GACCCTGTTACTTATTTCAACTCTCCCGCGTATCTAGAAG 784
||||||| ||||| |||||| |||||||||| ||||||||
Sbjct 661 GACCCTGCTACTTTTTTCAAGTCTCCCGCGTTTCTAGAAG 700
Score = 189 bits (102), Expect = 3e-47
Identities = 116/123 (94%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 406 GTGAAGGAGTCGGAATTGCAAAACAATGATTGGATTAATCTGTATTTGGAACTTGTACTC 465
|||||||| ||||| ||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 361 GTGAAGGAATCGGAGTTGCAAAACAATGATTGGATTTATCTGTATTTGCAACTTGTACTC 420
Query 466 TGTGCAATTCAAAAGGTCAGAATCTCAGATAGCGATCTGTCCAAGCTGAAGATTGTGAAA 525
||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 421 TGTGCAATTGAAAGGGTCAGAATCTCAGATGGCGATCTGTCCAAGCTGAAGATTGTGAAA 480
Query 526 GCG 528
|||
Sbjct 481 GCG 483
> Ahg913311 jgi|Araly1|913311|Al_scaffold_0001_3565
Length=888
Score = 257 bits (139), Expect = 8e-68
Identities = 292/362 (81%), Gaps = 25/362 (7%)
Strand=Plus/Plus
Query 352 TTGCCTCAGTGGCCGTCACATGATTCTTTCAATGATAGAAAACGATTTTACT-CGGTGAA 410
|||||| ||||||| || | ||| |||||||||| ||||||||| |||| | ||||||
Sbjct 523 TTGCCTGAGTGGCCACCAGAGGATGCTTTCAATGACAGAAAACGAGTTTA-TGTGGTGAA 581
Query 411 GGAGTCGGAATTGCAAAACAATGATTGGATTAATCTGTATTTGGAACTTGTAC-TCTGTG 469
|| || || |||||||||| |||||||||| ||||||||||||||||||| | | |||
Sbjct 582 TGAATCAGAGTTGCAAAACACTGATTGGATTTATCTGTATTTGGAACTTGT-CATTTGTT 640
Query 470 CAATTCAAAAGGTCAGAATCTCAGATAGCGATCTGTCCAAGCTGAAGATTGTGAAAGCGG 529
| | | | ||| ||| || |||||| |||||||||||||||||||||||||||| | ||
Sbjct 641 C-ACGCCATAGG-CAG-ATTTCAGATGGCGATCTGTCCAAGCTGAAGATTGTGAATGTGG 697
Query 530 TGATAGAAACCAAGGAAGATA-TGGTGCCCCCAAATGAGAGACTCAACGCCAAAAC-TGC 587
||||||||| | ||||| | ||| ||| || ||||||||||| ||||||||| | |||
Sbjct 698 CGATAGAAACTATTGAAGA-AGTGGAGCCGCCGAATGAGAGACTTAACGCCAAA-CGTGC 755
Query 588 AGTGGTCTACATAACTTTTAAGGGATTGGCCAATGCTCGTATTGCTGCTGGTGAGCATTA 647
| | |||||||||||||||||||| ||||||| || ||| | || |||| ||| |
Sbjct 756 AATTGTCTACATAACTTTTAAGGGCTTGGCCATTG---GTAG-GA--CTAGTGAACAT-A 808
Query 648 T-GAACGTAAAGCTATCA-TTAGAAGAATCTTCAATGAGCAT-ACAGG-TCACTTGTCTC 703
| ||||| |||||||| | |||||||| || ||||||||| | | ||| | |||||||||
Sbjct 809 TTGAACGCAAAGCTAT-AGTTAGAAGAGTCATCAATGAGCGTGA-AGGAT-ACTTGTCTC 865
Query 704 TC 705
||
Sbjct 866 TC 867
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31985127363
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5