BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19086.1
Length=544
Score E
Sequences producing significant alignments: (Bits) Value
Ahg335160 jgi|Araly1|335160|fgenesh1_pg.C_scaffold_1001725 324 5e-88
> Ahg335160 jgi|Araly1|335160|fgenesh1_pg.C_scaffold_1001725
Length=612
Score = 324 bits (175), Expect = 5e-88
Identities = 262/301 (87%), Gaps = 17/301 (6%)
Strand=Plus/Plus
Query 205 GAGCACTGGGATCATGACACTAGTTGCTCGGATGATGAGGATGTTGGTGATACTGAAAGC 264
|||||||||||||||||| |||||| |||||||| | || || | ||| | || | |
Sbjct 318 GAGCACTGGGATCATGACGCTAGTTCCTCGGATG-T-TGG-TGATCCTGA-A-AGATATC 372
Query 265 TAT-CATGTTCCAAGTGCAATGAGGGATTTTCTAGATATAGATAGCGAGGCATTCCTTAG 323
|| ||||||||||||||||||||||||||| ||| | |||||| | || ||||||||
Sbjct 373 -ATGCATGTTCCAAGTGCAATGAGGGATTTTGAAGACAAAGATAGAAAAGCCTTCCTTAG 431
Query 324 CAATTCAGGTAGAGACATGAAGAACATTCTTAAC-AAGGTCAAGGAATCTGAGAAAAAAG 382
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 432 CAATTCAGGTAGAGACATGAAGAACATTCTT-ACAAAGGTCAAGGAATCTGAGAAAAAAG 490
Query 383 TCCAGGTAA-----C---TTATCTCTGCTCTGGTTTGTTTGATGAGATAAGTTCAGAGTC 434
||||||||| | ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 491 TCCAGGTAAATGTTCCACTTATCTCTGCTCTGGTTTGTTTGATGAGAGAAGTTCAGAGTC 550
Query 435 TTTCTTATTCGAGAAAAGGTTTATCTAAGAGCTATGTGTGGGAGTTGAAGAATTCTGTTT 494
||||||| ||||| |||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 551 TTTCTTACTCGAGGAAAGATTTATCTAAGAGCTATGTGTGGGAGTTGAAAAATTCTGTTT 610
Query 495 A 495
|
Sbjct 611 A 611
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19840906280
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5