BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19090.1
Length=2109
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472129 jgi|Araly1|472129|fgenesh2_kg.1__2083__AT1G19090.1 3271 0.0
> Ahg472129 jgi|Araly1|472129|fgenesh2_kg.1__2083__AT1G19090.1
Length=2113
Score = 3271 bits (1771), Expect = 0.0
Identities = 2007/2120 (95%), Gaps = 19/2120 (1%)
Strand=Plus/Plus
Query 2 AGAAACAGAGGATTCATCGATGTTATACTCTATCAAAAATTGCAGATTTGCATATGGAAA 61
|||||| |||||||||| |||||||||||||||||||||| |||||||||||||||| ||
Sbjct 1 AGAAACTGAGGATTCATAGATGTTATACTCTATCAAAAATCGCAGATTTGCATATGG-AA 59
Query 62 GA---CTTCTTC--T-TCACGATTCATGATCACACGTCGTCCGATTTCTGATGCAAATTT 115
|| ||||||| | ||||||||||||||||| || |||| ||||||||||||||||||
Sbjct 60 GACTTCTTCTTCTTTGTCACGATTCATGATCACGCGCCGTCGGATTTCTGATGCAAATTT 119
Query 116 GTGCTTCGATCGCTCAATTCCTCGCTTGGGTTTCATTCCTTGTACTATTAGCGACGGTGG 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GTGCTTCGATCGCTCAATTCCTCGCTTGGGTTTCATTCCTTGTACTATTAGCGACGGTGG 179
Query 176 GCTCTTCTTCTTCTTCGGAATCTCTCCTAAATTGTCAACCTTTAGATCACCACCTTGTAA 235
||||||||||||||||| |||||||||| |||||||| ||||||||||| ||||||||||
Sbjct 180 GCTCTTCTTCTTCTTCGAAATCTCTCCTCAATTGTCATCCTTTAGATCAACACCTTGTAA 239
Query 236 ACCCTAGTCGTCTGCTTGGTTTCCTCAGAGCAATGTCTTCCGTCAATGATTTCATAACC- 294
|||||||||||| ||||| |||||||||||||||||||||||||||||||| ||| |||
Sbjct 240 ACCCTAGTCGTCAGCTTGATTTCCTCAGAGCAATGTCTTCCGTCAATGATTACATTACCG 299
Query 295 AACGACAAGCTTTGGGTCGTTTCTTCCATCACCGATGTATCTCCACCTATCTATGTGTTT 354
|| |||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 300 AA-GACAAGCTCTGGGTCGTTTCTTCCATCACCGATCTATCTCCACCCATCTATGTGTTT 358
Query 355 CTACAGTGCAGAGAAGATCTCTCTGTTTCCGATTGTCGACATTGCTTCAACGAGAGCAGA 414
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 CTACAGTGCCGCGAAGATCTCTCTGTTTCCGATTGTCGACATTGCTTCAACGAGAGCAGA 418
Query 415 TTGGAGCTCGAGAGAAAATGTTCGGGTTCCGGTGGTCGAATCCATAGTGATAGATGCTTC 474
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 419 TTGGAGCTCGAGAGAAAATGTTCGGGTTCCGGTGGTCGAATTCATAGTGATGGATGCTTC 478
Query 475 TTACGGTTTGATGATCGAGATTTCTCTGAGGAATTTGTTGATCCTACATTTGATAAAGCT 534
|||||||||||||||||||||||||| ||||| ||||||||||||| |||||||| |||
Sbjct 479 TTACGGTTTGATGATCGAGATTTCTCAGAGGAGTTTGTTGATCCTAGATTTGATAGAGCC 538
Query 535 AACTGTGAGGAAACAGGGACAGGGTTTGGAGAATTTTGGAGATTTCTTGATGAGGCTTTG 594
|| ||||||||||||| | ||||||||||||| ||||||| || ||||||||||||||||
Sbjct 539 AAATGTGAGGAAACAGAGCCAGGGTTTGGAGATTTTTGGAAATATCTTGATGAGGCTTTG 598
Query 595 GTGAATGTAACTTTAAAGGCTGTTAAAAATGGAGGGTTTGGTGCAGCTTCAGTGATTAAA 654
||||||||||| |||||||||||||||||||||||||||||||||||| | |||| || |
Sbjct 599 GTGAATGTAACCTTAAAGGCTGTTAAAAATGGAGGGTTTGGTGCAGCTGCTGTGACTAGA 658
Query 655 ACCGAGGCCGTGTATGCATTGGCTCAGTGTTGGCAAACACTTGATGAGAACACGTGTCGA 714
||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 659 GCCGAGGCGGTGTATGCATTGGCTCAGTGTTGGCAAACACTTGATGAGAACTCGTGTCGA 718
Query 715 GAGTGTTTGGTTAATGCTAGATCGAGCTTGAGAGCTTGTGATGGACATGAAGCTAGAGCt 774
|||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||
Sbjct 719 GAGTGTTTGGTTAATGCTAGATCGAGCTTGAGAGCTTGTGGTGGACATGAGGCTAGCGCT 778
Query 775 ttttttACTGGGTGTTACTTGAAGTATTCTACACACAAGTTCTTTGATGATGCTGCAGAA 834
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 TTCTTTACAGGGTGTTACTTGAAGTATTCTACACACAAGTTCTTTGATGATGCTGCAGAA 838
Query 835 CATAAACCTGACGCTGATCAGAGAAACTTTATAAGGTCATCGTTTTTTCCACATTTGAGT 894
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 839 CATAAACCTGACGATGATCAGAGAAACTTTATAAGGTCATCGCTTTTTCCACATTTGAGT 898
Query 895 GATCGTGATGTTACGAGATTAGCAATTGCTGCGATTTCGTTGTCGATTCTTACTTCTCTT 954
|||| |||| |||||| ||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 899 GATCATGATATTACGAAATTAGCAATAGCTGCGATTTCGTTGTCTTTTCTTACTTCTCTT 958
Query 955 GGAGCCTTTATCAGTTACAGACGGGTTTCAAGGAAAAGAAAAGCTCAAGTTCCATCGTGT 1014
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 GGTGCCTTTATCAGTTACAGACGGGTTTCAAGGAAAAGAAAAGCTCAAGTTCCATCGTGT 1018
Query 1015 GT-AAATTTCAAATACGAGATGCTTGAGAAAGCGACCGAGTCTTTCCATGACTCTATGAA 1073
| ||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||
Sbjct 1019 -TCAAATTTCAAATACGAGACGCTTGAGAAGGCGACCGAGTCTTTCCATGACTCTTTGAA 1077
Query 1074 ACTAGGCCAAGGAGGGGCCGTCAAAAAGCTCTTCTTTAACACACGTGAATGGGCAGATCA 1133
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1078 ACTAGGCCAAGGAGGGGCCGTCAAAAAGCTCTTCTTCAACACACGTGAATGGGCGGATCA 1137
Query 1134 ATTCTTCAACGAAGTGAATCTGATCAGCGGAGTTCAACACAAGAACCTTGTGAGACTACT 1193
|||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1138 GTTCTTCAACGAAGTGAATTTGATCAGCAGAGTTCAACACAAGAACCTTGTGAGACTACT 1197
Query 1194 TGGTTGCAGCATTGAAGGTCCCAAAAGTCTTCTTGTCTATGAATATGTTCATAACAGAAG 1253
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1198 TGGTTGCAGCATTGAAGGTCCCAAAAGTCTTCTTGTCTATGAATATGTTCATAATAGAAG 1257
Query 1254 CCTTGATCAAATCCTTTTCATGAAGAACACAGTCCATATTTTGAGCTGGAAGCAACGGTT 1313
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1258 CCTTGATCAAATCCTTTTCATGAAGAATACAGTCCATATTTTGAGCTGGAAGCAACGGTT 1317
Query 1314 TAACATCATTATAGGAATATCAGAAGGTCTAGAATACCTTCACAGAGGATCTGAAGTAAA 1373
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 1318 TAACATCATTATAGGAATTTCAGAAGGTCTAGAATACCTTCACGGAGGATCTGAAGTAAA 1377
Query 1374 AATCATCCATAGAGACATCAAAACCAGCAATATTCTCCTTGATCGAAACCTAAGTCCCAA 1433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 AATCATCCATAGAGACATCAAAACCAGCAATATTCTCCTTGATCGAAACCTAAGTCCCAA 1437
Query 1434 AATAGCTGATTTTGGACTCATACGTTCCATGGGCACTGACAAAACGCAAACCAATACTGG 1493
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1438 AATAGCAGATTTTGGACTCATACGTTCAATGGGCACTGACAAAACGCAAACCAATACTGG 1497
Query 1494 AATTGCTGGAACACTTGGTTATCTGGCTCCTGAATATCTGATCAAAGGCCAATTAACAGA 1553
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 1498 AATTGCTGGAACACTTGGTTATTTGGCTCCTGAATATCTTATCAAAGGCCAATTAACAGA 1557
Query 1554 GAAAGCTGACGTTTACGCATTTGGAGTTCTTATCATCGAGATAG-TAACTGGCAAGAAAA 1612
||||||||||||||||||||| ||||||||||| |||||||||| || |||| |||||||
Sbjct 1558 GAAAGCTGACGTTTACGCATTCGGAGTTCTTATAATCGAGATAGCTA-CTGGAAAGAAAA 1616
Query 1613 ATAACGCATTCACGCAAGGAACTAGCTCGGTTTTATACTCTGTATGGGAACATTTTAAAG 1672
| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1617 ACAACGCATTCACGCAAGGCACTAGCTCGGTTTTATACTCTGTATGGGAGCATTTTAAAG 1676
Query 1673 CAAACACTTTAGATCGCTCTATCGATCCTCGGTTGAAAGGGAGTTTCGT-AGAGGAAGAG 1731
||| ||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||
Sbjct 1677 CAAGCACTTTAGATCGCTCGATCGATCCTCGGTTGAAAGGGAGTTTC-TCAGAGGAAGAG 1735
Query 1732 GCCTTGAAGGTTCTTCAAATCGGATTGTTGTGTGTTCAATCTTCTGTAGAGTTGAGACCG 1791
|||||||||||||| ||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct 1736 GCCTTGAAGGTTCTCCAAATCGGATTGTTGTGTGTTCAATCTTCAGTAGAATTAAGACCG 1795
Query 1792 TCAATGTCTGAGATAGTCTTCATGTTACAGAACAAAGATAGTAAATTTGAATATCCGAAA 1851
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 1796 TCAATGTCTGAGATAGTCTTCATGTTAAAGAACAAAGATAGTAAATTTGAATGTCCGAAA 1855
Query 1852 CAGCCTCCGTTCTTGAGTGCCAGTGTTCTAATGCCAGATGAGGAGACTAGAGTCTGATAT 1911
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1856 CAGCCTCCGTTCTTGAGTGCCAGTGTTCTAATGCCAGATGAGGAGACTAAAGTCTGATAT 1915
Query 1912 TATCAGTTTCTTAGGATTGT-TAATGTTCTTCTGTAAATGCTCAAAAATGGATTTTACAC 1970
|||||||||||||||||| | || |||||||||||||||||||||| | |||||||||||
Sbjct 1916 TATCAGTTTCTTAGGATT-TATATTGTTCTTCTGTAAATGCTCAAAGAGGGATTTTACAC 1974
Query 1971 CATTTCTTTCTCCTTTTCAAATCTTTTATC-GTTCATATTTTATTATGAAGGTCAACAAA 2029
|| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1975 CACT-CTTTCTCCTTTTCAAATCTTTTATCTGTTCATATTTTATTATGAAGGTCAACAAA 2033
Query 2030 AATGGAACCAAGGCTAGATTCTAAAAGTTTTGATTCGTTTACATCATTATTCATTTTACA 2089
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 2034 AATGGAACCAAGGCTAGATTCTAAAAGTTTTGATTCGCTTACATCATTATTCTTTTTACA 2093
Query 2090 ATCTAAATCATGTGAGTTAT 2109
||||||| ||| |||||||
Sbjct 2094 ATCTAAAAGATGCGAGTTAT 2113
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79341980335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5