BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19100.1
Length=2596
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472130 jgi|Araly1|472130|fgenesh2_kg.1__2084__AT1G19100.1 3792 0.0
> Ahg472130 jgi|Araly1|472130|fgenesh2_kg.1__2084__AT1G19100.1
Length=2555
Score = 3792 bits (2053), Expect = 0.0
Identities = 2428/2600 (93%), Gaps = 61/2600 (2%)
Strand=Plus/Plus
Query 9 TCCTCTCCTTTCTCTCAACCTCTCCGCCTCGGATTCCGCCCTATCTCCCTTTCACCGCCT 68
|||||||||||||||||||||||||||||| ||||||| |||||||| | | ||||||||
Sbjct 1 TCCTCTCCTTTCTCTCAACCTCTCCGCCTCCGATTCCGTCCTATCTCTC-TCCACCGCCT 59
Query 69 CAGATTCGActctctctctctctcACAAATTT--TTGATCTATTTCACTCTCCTTGTCGT 126
||||||| |||||||||||||||| ||| || ||| |||||||||||||||||||
Sbjct 60 CAGATTC-TCTCTCTCTCTCTCTCAGTGTTTTCATTTATCAATTTCACTCTCCTTGTCGT 118
Query 127 GGCTTTGTTTTGACCGGAACATTATTCCGGCAGCTACCCAAGACCTCACTCCTCGACTAT 186
||||||||||| |||||||| || |||||||||||||||||||||||||||||||||
Sbjct 119 GGCTTTGTTTTAACCGGAACTTTGTTCCGGCAGCTACCCAAGACCTCACTCCTCGAC--- 175
Query 187 TTAGTTTCCTCGCTGTCACTATCTCAACGCCGGAGGAAAAACTTAAACAAAGAGTGATAG 246
| || | | | | | || | | | ||||| || | ||||||||| |||
Sbjct 176 ---GATT--T-G--G----T-T-TC--C-TC--A--AAAAA-TTCATCAAAGAGTGCTAG 213
Query 247 GTCGAAGTGACACCGGTGTTGTAATCGGTAAACCCAGAAGAAGCCCTAAGAGTACCGTCG 306
||||||||||||| |||||||||| | | |||| |||||||||| ||||
Sbjct 214 GTCGAAGTGACACTGGTGTTGTAA----T-----C----GAAGTCCTAAGAGTAGCGTCA 260
Query 307 ATTTTTGTGCTCTTATCTTCTTCTGCTCAATCTATTTCGCGCACATTGTACAGTGGAAAG 366
|||| | ||||||||||||||||| ||| ||||| |||||||||||||||| ||||||
Sbjct 261 ATTTCTCTGCTCTTATCTTCTTCTACTCTATCTACATCGCGCACATTGTACAAAGGAAAG 320
Query 367 TAACAGTAGCTTTGCATGAGCCTGATTTTCAGATAAACAAAGATGAGTCACGATAGAAGT 426
||||||| ||||||||||||||| |||||||||||||||||||||||| | | | ||||
Sbjct 321 TAACAGTCGCTTTGCATGAGCCTAATTTTCAGATAAACAAAGATGAGTTTCAACACAAGT 380
Query 427 GTTAACGTTTCGCATGATGCTGT-GATTGCTAAACCCGAGCGTGGCACTATGCTTCAGAG 485
|||||||||||||||||||||| || || ||||||||||||||||||||||||||||||
Sbjct 381 ATTAACGTTTCGCATGATGCTGTGGA-TGTTAAACCCGAGCGTGGCACTATGCTTCAGAG 439
Query 486 CTTCTCACCTAGGAGCCATGGTTCTAAAGGATATTCTCTACCTCAAGATTCAGAAGAAAA 545
||||||||| || ||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 440 CTTCTCACCCAGAAGCCATGGTTCCAAAGGATATTCTCTACCTCAAGATTCAGAAGAGAA 499
Query 546 TAGAGGATCAGTCGGCCAAAGTGCTGGTCAGAGTAGCACTAGTGTCGTTGATCAGGTCCG 605
||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 500 TAGAGGATCAGTCGGTCAAAGTGCTGGGCAGAGTAGCACTAGTGTGGTTGATCAGGTCCG 559
Query 606 GTCGCCAGCTGATGATGCTGGTGTCACTTCTTCATCCACCATATGTCCAGCTCCTGTTTG 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 560 GTCGCCAGCTGATGATGCTGGTGTCACTTCTTCATCCACCATATGTCCAGCTCCTGTTTG 619
Query 666 TAGGCAATTTTGGAAAGCTGGAAGCTATAATGATGAATTGAGTTCAAAGTCTCAGCAGCC 725
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 620 TAGGCAATTCTGGAAAGCTGGAAACTATAATGATGAATTGAGTTCAAAGTCTCAGCAGCC 679
Query 726 AAATGGAAAAAATTATCTTCATGTGCACCCTATGTTCCTTCACTCCAATGCTACCTCACA 785
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 680 AAATGGAAAAAATTATCTTCATGTGCACCCTATGTTCCTTCACTCCAATGCTACTTCACA 739
Query 786 TAAATGGGCTTTTGGAGCTGTTGCAGAATTGCTTGACAATGCTGTTGATGAGATCCAAAA 845
||||||||| ||||| |||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 740 TAAATGGGCATTTGGGGCTGTTGCTGAACTGCTTGACAATGCTGTTGATGAGATCCAAAA 799
Query 846 TGGGGCCACTTTTGTCATTGTAGATAAAACCACAAATCCAAGGGATGGTGCAACAGCTTT 905
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 800 TGGGGCCACTTTTGTCATTGTAGATAAAACCACAAATCCAAGGGATGGTACAACAGCATT 859
Query 906 GCTAATTCAAGATGATGGTGGTGGGATGGATCCTCAGGCAATGCGGCATTGTATGGGTTT 965
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 860 GCTAATTCAAGATGATGGTGGTGGGATGGATCCTCAGGCAATGCGGCATTGCATGGGTTT 919
Query 966 TGGATTCTCAGATAAAAAGTCGGATTCAGCCATTGGAAGATATGGAAATGGTTTCAAGAC 1025
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 920 TGGATTCTCAGATAAAAAGTCGGATTCAGCCATTGGAAGATATGGAAATGGTTTCAAGAC 979
Query 1026 CAGCACAATGAGACTTGGGGCAGATGTCATCGTCTTCAGCCGCCATTCGAAGAACCAAAC 1085
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 980 CAGCACAATGAGACTTGGGGCAGATGTCATCGTTTTCAGCCGCCATTCGAAGAACCAAAC 1039
Query 1086 ATTGACACAAAGTATCGGGCTCCTTTCTTATACATACCTGACACGTACAGGCCATGATAG 1145
||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1040 ATTGACACAGAGTATCGGGCTTCTTTCTTATACATACCTGACACGTACTGGCCATGATAG 1099
Query 1146 AATAGTTGTTCCCATTTTGGATTACGAGTTTAATGCTTCAGCTGGCGAGTTCAAGACATT 1205
||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||
Sbjct 1100 AATAGTTGTTCCCATTTTGGATTACGAGTTTAAGGCATCAGCTGGCGAGTTCAAGCCATT 1159
Query 1206 GCAAGACCGAGAACATTTTATATCCAGTCTCTCTATTCTACTAGAATGGTCTCCATTTTC 1265
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1160 GCAAGACCGAGAACATTTTATATCCAGTCTCTCCATTCTACTAGAATGGTCTCCATTTTC 1219
Query 1266 AACAGAAGCAGAACTTTTGCAGCAGTTTGATGATGTTGGACCACATGGGACAAAGGTTAT 1325
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1220 AACAGAGGCAGAACTTTTGCAGCAGTTTGACGATGTTGGACCACATGGGACAAAGGTTAT 1279
Query 1326 CATCTATAATATGTGGCTCAACAGTGATGCTAAATTGGAATTAGACTTTGATTCGGTTGC 1385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1280 CATCTATAATATGTGGCTCAACAGTGATGCTAAATTGGAATTAGACTTTGATTCGGTTGC 1339
Query 1386 AGAGGATATTCTCATTGAAGGAAGCATaaaaaaaaCTGGATCTAAGATTGTGAATGATCA 1445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1340 AGAGGATATTCTCATTGAAGGAAGCATAAAAAAAACTGGATCTAAGATTGTGAATGATCA 1399
Query 1446 TATTGCCAGCCGGTTTTCTTACTCTCTTCGTGTTTACCTATCTATATTATACTTGCGGAT 1505
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1400 TATTGCAAGCCGGTTTTCTTACTCTCTTCGTGTTTACCTATCCATATTATACTTGCGAAT 1459
Query 1506 TCCTGAGACTTTCAAGATAATTTTGCGTGGTAAGGTTGTCGAACATCATAACGTTGCTGA 1565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1460 TCCTGAGACTTTCAAGATAATTTTGCGTGGTAAGGTTGTCGAACATCATAACGTTGCTGA 1519
Query 1566 TGATCTCATGCATCCGCAGTACATCTTGTATAAGCCTCAGGCTGCTGGATCTGAAGAGGC 1625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1520 TGATCTCATGCATCCGCAGTACATCTTGTATAAGCCTCAGGCTGCTGGATCTGAAGAGGC 1579
Query 1626 TTTAGTTGTAACGACGATTGGATTTCTGAAAGAAGCTCCCAAAGTAAATCTTCACGGGTT 1685
| |||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||
Sbjct 1580 TGTAGTTGTAACGACGATTGGATTTCTGAAGGAAGCTCCCAAAGTAAATCTTCATGGTTT 1639
Query 1686 CTGCGTTTATCACAAAAACCGCCTTATTATGCCATTTTGGCAGGTCATAAATTATTCAAG 1745
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1640 CTGCGTTTATCACAAAAACCGCCTTATTATGCCATTTTGGCAGGTCATAAGCTATTCAAG 1699
Query 1746 CAGTCGAGGAAGAGGGGTTGTTGGTGTTCTAGAAGCTAATTTTGTTGAGCCAACCCATAA 1805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1700 CAGTCGAGGAAGAGGGGTTGTTGGTGTTCTAGAAGCTAATTTTGTTGAGCCAACCCATAA 1759
Query 1806 CAAGCAGGATTTTGAGAAAACTGTTCTTCTTCAGAAGCTTGAAAACCGTTTAAAGGAAAT 1865
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1760 CAAGCAGGATTTTGAGAAAACTGTTCTTCTTCAGAAGCTTGAAAACCGTTTGAAGGAAAT 1819
Query 1866 GACGGTGGAGTATTGGAGCTGCCATTGTGTGTTGATTGGGTATCAAGTAAATAAGAAGCC 1925
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1820 GACAGTGGAGTATTGGAGCTGCCATTGTGTGTTGATTGGGTATCAAGTAAATAAGAAGCC 1879
Query 1926 TCGTCTTCAGATACCTCAAAAAGTTCAACCTGCCGGTAGACAAGCATTAAGTCCTCCTCC 1985
|||||||||||||||||| || ||||||||||| |||||||||||||||||||||| |||
Sbjct 1880 TCGTCTTCAGATACCTCAGAATGTTCAACCTGCTGGTAGACAAGCATTAAGTCCTCTTCC 1939
Query 1986 AGGCTTCCAAGCAGTTTTTCCACAAGGAAATACAACATCTCTCCCTAGAGTTTCAACTCA 2045
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| || |
Sbjct 1940 AGGCTTCCAAGCAGTTTTTCCACAAGGAAATTCAACATCTCTCCCTAGATTTTCAGCTAA 1999
Query 2046 GCCAGTGCTGTTGGAGAAGAGGAAAGAACATCCTGATTCTGTTGCAAGTGCAGCGTTAAA 2105
||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||
Sbjct 2000 GCCAGTGCTGTTGGAAAAAAGGAAAGAACATCCTGATTCTGTTGCAAGTGCAGCGTCAAA 2059
Query 2106 AAGAAAGGTTGGGAATGATGACTTTACTGTCCCGGGGCATATTCGGGTTGAACAGTTTAT 2165
|||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||
Sbjct 2060 AAGAAAGGTTGGGAATGATGGCTTTACTGTCCCGGGGCAGAATCGGGTTGAACAGTTTAT 2119
Query 2166 TCATGGATCAGCAAGTCAGTCACAAGATATTGAAACTGTCAAGTTGATGGAAGAAAACAA 2225
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2120 TCATGGATCTGCAAGTCAGTCACAAGATATTGAAACTGTCAAGTTGATGGAAAAAAACAA 2179
Query 2226 GAAGCTCCGAGCAAAATGTTTGGACCGCAAGGTGCGAAGTCAGAACCTTGAAGTCAAGGC 2285
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2180 GAATCTCCGAGCAAAATGTTTGGACCACAAGGTGCGAAGTCAGAACCTTGAAGTCAAGGC 2239
Query 2286 CATGAATCTTAGGAGTGAGCTCGAGAAC-TATAAAAGTGAGTATGAAAGGTTAATGGTAG 2344
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 2240 CATGAATCTTAGGAGTGAGCTCGAGAACGT-TAAAAGTGAGTATGAAAGGTTAATGGTAG 2298
Query 2345 AGCTACAAGCTTTGGATTTGGTGAAAGACGAGCACAGAAGAAATGTAAATACGTAGAAAC 2404
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2299 AGCTACAAGCTTTGGATTTGGTGAAAGGCGAGCACAGAAGAAATGTAAATACGTAGAAAC 2358
Query 2405 TTCCTCTGCACTTaaaaaaaCACTCTTTTTTGGCTGGTCGTATCCATCTTCTAGGTATGA 2464
|| |||||||||| ||||| |||||||||| |||||||| ||||||||||||||||||||
Sbjct 2359 TTTCTCTGCACTTTAAAAACCACTCTTTTT-GGCTGGTCATATCCATCTTCTAGGTATGA 2417
Query 2465 AAACTAGAG-A--TCCTTAGTTTATGGGCTG-TC-TCGGAAAGACAAAACAAAATGTGTA 2519
||||||||| | |||||||||||| || | | |||||||||||||||||| || |
Sbjct 2418 AAACTAGAGGAGATCCTTAGTTTATCT-CTACTAAT-GGAAAGACAAAACAAAATTTGAA 2475
Query 2520 AAAA-----CAGGATTCA--TGTTTATGAATCTTTTTGTCTAGAAGATTCAGCAAAGTTA 2572
|||| ||||||||| ||||||||||||||||||||||||||| || |||||||||
Sbjct 2476 AAAAAAAAACAGGATTCAAATGTTTATGAATCTTTTTGTCTAGAAGACTCGGCAAAGTTA 2535
Query 2573 TGGAAAATATATAACTTTCT 2592
|||||||||| ||| |||||
Sbjct 2536 TGGAAAATATCTAAATTTCT 2555
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97891929650
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5