BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19110.1
Length=2551
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472131 jgi|Araly1|472131|fgenesh2_kg.1__2085__AT1G19110.1 4060 0.0
> Ahg472131 jgi|Araly1|472131|fgenesh2_kg.1__2085__AT1G19110.1
Length=2532
Score = 4060 bits (2198), Expect = 0.0
Identities = 2430/2541 (96%), Gaps = 20/2541 (1%)
Strand=Plus/Plus
Query 12 TGTCTGAAGAAAGAAACCGAATCGATTCAATTTCAACGTCTCGTCCTTCAATTTTCGTTT 71
|||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||
Sbjct 1 TGTCTGAAGAAAGAAACCGAATCGATTCAA-TTCAACGTCTCGTCCATCGATTTTCGTTT 59
Query 72 T-CCGAGAAAATTTAGGAAAGAAAGAGAAAGAGAGGGCAGAGACAAAAATTTCTTCGCCG 130
| ||||||||||||||||||| | | ||||||||||||||||||| | |||||||||||
Sbjct 60 TCCCGAGAAAATTTAGGAAAG--A-A-AAAGAGAGGGCAGAGACAACATTTTCTTCGCCG 115
Query 131 TCTGAGTGGGAAAGATGGCGGAGGATTTCGCTAGAGCGGTAGACGATGGGCTTAAACTCG 190
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 116 TCTGAGTGGGAAAGATGGCGGAGGATTTCGCTAGAGCCGTCGACGATGGGCTTAAACTCG 175
Query 191 CGAAACGGATTTATTTCGGCAAAGACCGAGCCGTTGCGGCGCCGAGACCACCTGCTCCGA 250
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 176 CGAAACGGATTTATTTCGGCAAAGACCGAGCCGTTGCGGCGCCGAGACCACCAGCTCCGA 235
Query 251 TGGACAGATCTTCCACTACGCAGCCTTACCTTCCTACAGCACCTATGGTTTACGCCGTTA 310
|||| ||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 236 TGGAGAGATCTTCCACGACGCAGCCTTACCTTCCTACGGCACCTATGGTTTACGCTGTTA 295
Query 311 TACCCGACCCGGGAATTGTGGATAACCCGGATTTGCCTAGCTATCAGCCTCACGTGCACG 370
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 296 TACCCGACCCGGGAATTGTGGATAACCCGGATTTGCCTAGCTACCAGCCTCACGTGCACG 355
Query 371 GCAGGTGCGACCCACCGGCTTTGATTCCTCTGCAGATGAATTCGATTGAGCTGGATGTTG 430
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 356 GCAGGTGCGACCCACCGGCTTTGATTCCTCTGCAGATGAATTCGATTGAGCTTGAGGTTG 415
Query 431 ATTGTTATCTCGACACGGCTCTTGTTACTGTCACCGGATCGTGGCGGGTTCATTGTGTTA 490
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 416 ATTGTTATCTCGACACGGCTCTTGTTACCGTCACCGGATCGTGGCGTGTTCATTGTGTTA 475
Query 491 TGGGAAGCAAGAGATGTGATTGCCGAATTGCTATTCCCATGGGAGAACAGG---GATCAA 547
||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||
Sbjct 476 TGGGAAGCAAGAGATGTGATTGCCGAATTGCAATTCCCATGGGAGAACAGGTCTGTTCAA 535
Query 548 TACTAGGTGTTGAGGTTGAGATTCCTAGAAAATCGTACACAACGCAGTTGATCACAGCAG 607
| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 536 TTCTAGGTGTTGAGGTTGAGATTCCTAGAAAATCTTACACAACGCAGTTGATCACAGCCG 595
Query 608 AAGATGGAAACGAATTTGAGAAAACGGCACTACCTGAAACTGGTGGCTTTTTGAAACCTA 667
|||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||| |
Sbjct 596 AAGATGGAAACGAATTCGAGAAAACGGCACTACCTGAAACTGGAGGCTTCTTGAAACCAA 655
Query 668 ACATTTTCACTCTTACTA-TACCACAGGTTGATGGAGGTACCAATCTCTCTATCAAGATG 726
|||| ||||||||||| | ||||||||||||||||||||||||| |||||||||||||||
Sbjct 656 ACATATTCACTCTTAC-AGTACCACAGGTTGATGGAGGTACCAACCTCTCTATCAAGATG 714
Query 727 ACTTGGTCTCAGAAGTTGACGTATAACCAAGGGCAGTTTTTTCTTGATATTCCTTTCAAC 786
||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||
Sbjct 715 ACTTGGTCTCAGAAGTTGACGTATAACGAAGGGCAATTTTTTCTCGATATTCCTTTCAAC 774
Query 787 TTTCCTGAGTATGTGACTCCTGCGGTAAAGAAAATCTCAAAAAGAGAAAAGATTTACTTG 846
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 775 TTTCCTGAGTATGTGACTCCTGCGGTAAAGAAAATCTCAAAGAGAGAAAAGATATACTTG 834
Query 847 AGTGTTAATGCTGGTACTGGAACAGAAGTTCTCTGCAAAGGATGCAGTCATCAACTAAAG 906
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 835 AGTGTTAATGCTGGTACTGGAACAGAAGTTCTCTGCAAAGGATGCAGTCATCAATTAAAG 894
Query 907 GAGAAATTGCGGAGTGCAGGGAAGTTGAGGTTTGCATATGAAGCAGATGTTTTGAAGTGG 966
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 GAGAAATTGCGAAGTGCAGGGAAGTTGAGGTTTGCATATGAAGCAGATGTTTTGAAGTGG 954
Query 967 TCGAACACTGACTTTAGCTTTTCTTATACGGCCTCCTCAAGTAATATAGTTGGTGGACTT 1026
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 TCGAACACAGACTTTAGTTTTTCTTATACGGCCTCCTCAAGTAATATAGTTGGTGGACTT 1014
Query 1027 TTCCTTCAATCTGCGCCTGTTCACGATGTTGATCAGAGGGACATATTTTCTTTCTATCTT 1086
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1015 TTCCTTCAATCTGCCCCTGTTCACGATGTTGATCAGAGAGACATATTTTCTTTCTATCTT 1074
Query 1087 TTTCCAGGAAAGCAGCAAAAAACTAAGGCATTCAAGCGGGAGGTAGTATTTGTTGTTGAC 1146
|||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||
Sbjct 1075 TTTCCAGGAAAGCAGCAAAAAACTAAGGCATTTAAGCGAGAGGTGGTATTTGTTGTTGAC 1134
Query 1147 ATAAGTAAAAGTATGACTGGAAAACCTCTCGAGGATGTAAAAAATGCGATATCTACAGCT 1206
||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||||
Sbjct 1135 ATAAGTAAAAGCATGACTGGAAAACCTCTTGAGGATGTAAACAATGCGATATCCACAGCT 1194
Query 1207 CTATCTAAGCTTGATCCTGGAGATTCTTTCAATATTATCACTTTCAGCAATGATACTGCT 1266
|||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||| ||
Sbjct 1195 CTATCTAAGCTTAATCCTGGAGATTCCTTCAATATTATCACTTTCAGCGATGATACTTCT 1254
Query 1267 CTATTTTCGACATCAATGGAGTCAGTCACTTCTGATGCTGTTGAAAGAGGCATTGAGTGG 1326
|| ||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1255 CTGTTTTCGACATCGATGGAGTCGGTCACTTCCGATGCTGTTGAAAGAGGCATTGAGTGG 1314
Query 1327 ATGAACAAGAACTTTGTCGTCGCAGATGGTACAAACATGCTCCCTCCCCTAGAGAAGGCT 1386
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 ATGAACAAGAACTTTGTTGTCGCAGATGGTACAAACATGCTCCCTCCCCTAGAGAAGGCT 1374
Query 1387 GTGGAAATGCTTTCAAATACTCGTGGCTCTATTCCTATGATCTTCTTCGTAACAGATGGG 1446
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1375 GTGGAAATGCTTTCGAATACTCGTGGCTCTATTCCTATGATCTTCTTCGTAACAGATGGG 1434
Query 1447 TCTGTTGAAGATGAGAGACACATTTGTGATGTAATGAAGAAACATCTAGCTAGTGCTGGA 1506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1435 TCTGTTGAAGATGAGAGACACATTTGTGATGTAATGAAGAAACATCTAGCTAGTGCTGGA 1494
Query 1507 TCAGTGTTTCCTCGGATACACACTTTTGGGTTAGGTGTATTCTGTAATCACTACTTCCTG 1566
||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1495 TCAGTGTGTCCACGGATACACACTTTTGGGTTAGGTATATTCTGTAATCACTACTTCCTG 1554
Query 1567 CAAATGCTTGCAAATATATCCTGTGGCCAGCACGAATCAGTTTATAATACAGATCACATT 1626
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 CAAATGCTTGCAAATCTATCCTGTGGCCAGCACGAATCAGTTTATAATACAGATCACATC 1614
Query 1627 GAGGAAAGAATGGACAAACTGTTTACAAAGGCTTTATCCACCATTCTTGTTAATATAGCA 1686
|||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||| ||
Sbjct 1615 GAGGAACGAATGGACAAACTGTTTACAAAGGCTTTATCTACCATCCTTGTTAATATAACA 1674
Query 1687 ATTGAGCCCCTTCAGAGTCTAGATGAAGTTGAGGTATACCCTTCAAATATTCCGGATCTG 1746
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1675 ATTGAGCCCCTTCAGAGTCTAGATGAAGTTGAGGTATACCCTTCGAATATTCCGGATCTG 1734
Query 1747 ACGTCTGCAAGTCCATTGATGATATATGGAAGATACCGAGGAAAGTTCCCCGAGAATGTG 1806
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1735 ACATCTGCAAGTCCATTGATGATATATGGAAGATACCGAGGAAAGTTCCCCGAGAATGTG 1794
Query 1807 ATAGCCAAAGGTCTGCTAGGAGATTTGAGCAGCTTTTCGACAGACTTGACTGTACAG-AG 1865
||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||
Sbjct 1795 ATAGCCAAAGGTCTGCTAGGAGATTTGAGCAGCTTTTATACAGACTTGACTGTAC-GAAG 1853
Query 1866 TGCAAAAGACATGCCTCTTGATAAAGTATTTGCAAAGAATGTTATTGACTTGCTTACTGC 1925
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1854 TGCAAAAGATATGCCTCTTGATAAAGTATTTGCAAAGAATGTGATTGACTTGCTTACTGC 1913
Query 1926 TGAGGCATGGTTTTCTGAAGATAAACAGCTAAAAGAGAAGATTGCTAAACTAAGCATCCA 1985
|||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1914 TGAGGCATGGCTCTCTGAAGATAAACAGCTAAAAGAGAAGATTGCCAAACTAAGCATCCA 1973
Query 1986 AACCGGCGTACTATCCGAGTATACTCGAATGATCCAATTAGAGAACACAGAAGAATTGAA 2045
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1974 AACTGGCGTACCATCCGAGTATACTCGAATGATCCAATTAGAGAACACAGAAGAATTAAA 2033
Query 2046 ACCCAGCGAAACTGGCGGAAAGAAAAAGACAACAAGCAACGGCGAGAAACAGAAGATGAT 2105
||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||
Sbjct 2034 ACCCAGCGAAACTGGCGTAAAGAAAAAGACAACAAGCAATGGAGAGAAACAGAAGATGAT 2093
Query 2106 ATCAAGAACGATCCCGCTACAAAGCCTTGGGATAGGATTTGGGGATAAAACAGCCACCAG 2165
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||
Sbjct 2094 ATCAAGAACGATCCCGCTACAAAGCCTTGGGATAGGCTTTGGTGATAAAACAGCGACCAG 2153
Query 2166 AGAGAATGTTCCGCCAGGATTTGGCGAGCAGAAAGCTCCTGATGCTGCTGAGAAGTTCGT 2225
|||||||||||| ||||||||||| ||||||||||| ||||||||||||||||| |||||
Sbjct 2154 AGAGAATGTTCCACCAGGATTTGGTGAGCAGAAAGCACCTGATGCTGCTGAGAAATTCGT 2213
Query 2226 CAAGGCTGCTTCGAGCTGTTGTGTCTCCTTGTGCAACAAATGTTGCTGCATGTGTTGTGT 2285
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2214 CAAGGCTGCTTCGAGCTGTTGTGTCTCCTTGTGCAATAAATGTTGCTGCATGTGTTGTGT 2273
Query 2286 CCAATGCTGCTCTAAGCTCAATGATCAATGTGTCCTTGTCTTCACACAGCTCTTCACAGC 2345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2274 CCAATGCTGCTCTAAGCTCAATGATCAATGTGTCCTTGTCTTCACACAGCTCTTCACAGC 2333
Query 2346 GATTGCTTGCATCGCCTGCTTTGAATGTTGCTCAACTGTTTGCTGTTCTGGAGACGATGG 2405
|||||||||||||||||| |||||||||||| |||||||||||||| |||||||||| ||
Sbjct 2334 GATTGCTTGCATCGCCTGTTTTGAATGTTGCACAACTGTTTGCTGTGCTGGAGACGACGG 2393
Query 2406 GTAGTTAGTTA-A--ATT-ATaaaaaaaaaTCGGTTTTGAATTCGAGTGTAAAGCTTTAA 2461
||||||||||| | ||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 2394 GTAGTTAGTTATATTATTTATAAAAAAAAA-CGGTTTTGAATTCGAGTGTAAAGCTTTAA 2452
Query 2462 AAGTTTCAAAGTAAGTTTGTACATTTTACATACACACTGCATGTAATTTCTGTACGGCCT 2521
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2453 AAGTTTCAA-GTAAGTTTGTACATTT-ACATACACACTGCATGTAATTTCTGTACGGCCT 2510
Query 2522 GATCAAATATAAAAGCTGTGG 2542
|||||||||||||||||||||
Sbjct 2511 GATCAAATATAAAAGCTGTGG 2531
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96177868625
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5