BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19115.3
Length=791
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472133 jgi|Araly1|472133|fgenesh2_kg.1__2087__AT1G19115.2 918 0.0
> Ahg472133 jgi|Araly1|472133|fgenesh2_kg.1__2087__AT1G19115.2
Length=849
Score = 918 bits (497), Expect = 0.0
Identities = 593/636 (93%), Gaps = 20/636 (3%)
Strand=Plus/Plus
Query 11 ATTGACAGAAAAAGAAAATTTCTTGGAGAACATTGACAGAAAAAGAAAATTTCTTGGATA 70
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 1 ATTGACAGAAAAAGAAAATTTCTTGGAGATCATTGACAGAAAAAGAAATTTTCTTGGATA 60
Query 71 AACACACACATACATGTGCTTTTATATATGCATGTCTCTGAAATATGAAGATTTTTAGTT 130
|||||||| |||||||||| || | ||| |||||||||||||||||||||||||||||
Sbjct 61 AACACACATATACATGTGC--TT-T-TAT--ATGTCTCTGAAATATGAAGATTTTTAGTT 114
Query 131 GGGTTCAAAGAAAGCTTAGCGGAAAGAAGCGTGTGCCTACTTCAGATTCTTCTCAAGAAC 190
|||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 115 GGGTTCAAAGAAAGCTTAGCGGAAAGAAGCATGAGCCTACTTCAGATTCTTCTCAAGAAT 174
Query 191 CATCAAGTCCTCCTTTGAGTAAAGAAGTCCAAGGTTTGCCTCAAGACGAAGAAACCTTCT 250
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 CATTAGGTCCTCCTTTGAGTAAAGAAGTCCAAGGTTTGCCTCAAGACGAAGAAACCTTCT 234
Query 251 TAGCCATCGGAACACTTGGAAACAATATCTTCCCCAAGCaagaagaagaagaagaagaaA 310
||||||| |||||||||||||||||| || | ||| | ||| |||||||||||||
Sbjct 235 TAGCCATTGGAACACTTGGAAACAATCTC-TGCCC---C---AAG--GAAGAAGAAGAAA 285
Query 311 CAGATTCTAGC-AA--AGATATAACTCCGGTTAATACAGATGTTACTATCGGGAAGAAGA 367
||||||||||| || |||| ||||| |||||||||||||||||||||| ||||||||||
Sbjct 286 CAGATTCTAGCAAATTAGATCTAACTGCGGTTAATACAGATGTTACTATTGGGAAGAAGA 345
Query 368 AATCGCTTTCTTTTCTTCTCAAGAAGATGTTTGTTTGCACAAGTGGCTTCAAAACTCCAC 427
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 346 AATCACTTTCTTTTCTTCTCAAGAAGATGTTTGTTTGCACAAGTGGCTTCAAAACTCCAC 405
Query 428 CTCCTCTTCTTGATTTATCTAGAGGAGATTCATTGCACAACACACGAATGGAAAAGATGC 487
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 406 CTCCTCTTCTTGATTTGTCTAGAGGAGATTCATTGCACAATACACGAATGGAAAAGATGC 465
Query 488 TAAGGACAATACTCAACAAGAAGATACATCCACAACGTTCAAATTCTATAGCAAAGAAGT 547
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 466 TTAGGACAATACTCAACAAGAAGATACATCCACAACGTTCAAATTCTATTGCAAAGAAGT 525
Query 548 ACTTGGA-AAGTAATCATAAGATTATGGATGAAGCTCGTTCAAGTGTTGACGCCAACAAA 606
||||||| || | |||||||| || | |||||||||||||||||||||||||||||||||
Sbjct 526 ACTTGGAGAA-TCATCATAAGTTTGTAGATGAAGCTCGTTCAAGTGTTGACGCCAACAAA 584
Query 607 TGGGTCAAGACTGATTCTGAATGTGAGATTTTCTAA 642
||||||||||||||||||||||||||||||||||||
Sbjct 585 TGGGTCAAGACTGATTCTGAATGTGAGATTTTCTAA 620
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29202154422
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5