BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19120.1
Length=767
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472135 jgi|Araly1|472135|fgenesh2_kg.1__2089__AT1G19120.1 1081 0.0
> Ahg472135 jgi|Araly1|472135|fgenesh2_kg.1__2089__AT1G19120.1
Length=716
Score = 1081 bits (585), Expect = 0.0
Identities = 677/720 (94%), Gaps = 11/720 (2%)
Strand=Plus/Plus
Query 40 AAATTAGGGTTCGTTGATTCTCTGTTCTTAAGCTCAGTAATCGAGGAGAAGAAGAAAAGG 99
|||||||||||| |||||||||||||||| |||||||| ||||| | | |||||||||||
Sbjct 1 AAATTAGGGTTCTTTGATTCTCTGTTCTTGAGCTCAGTTATCGA-G-G-AGAAGAAAAGG 57
Query 100 -GA-AGATCGGGAATTGGGAAACTGAGAAGTCAAAAAGGCAAATGCGAGTGGAGGAGATT 157
|| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 58 AGAGAGATCGGGAATTGGGAAACTGACAAGTCAAAAAGGCAAATGCGAGTGGAGGAGATT 117
Query 158 GAGTTTTAG--A-A-TTCCAATGTCTTGGGCTGCTCCTGATGATATCTTCTTCTCCACTT 213
||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 GAGTTTTAGTTAGAGTTCCAATGTCTTGGGCTGCTCCTGATGATATCTTCTTCTCCACTT 177
Query 214 CTCTTGCTGCTTACCTAGACAAGAAACTTCTTGTGTTGCTTCGTGATGGTAGGAAACTGA 273
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 CTCTTGCTGCTTACTTAGACAAGAAACTTCTTGTGTTGCTTCGTGATGGTAGGAAACTGA 237
Query 274 TGGGTCTACTTCGGTCCTTTGATCAATTTGCTAATGCTGTTTTAGAAGAAGCTTATGAAA 333
||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 238 TGGGTTTACTTCGATCCTTTGATCAATTTGCTAATGCTGTTATAGAAGAAGCTTATGAAA 297
Query 334 GAGTCATTGTGGGTGATCTCTACTGTGATATTCCCTTAGGTCTATACATTATCCGTGGAG 393
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 298 GAGTCATCGTGGGTGATCTCTACTGTGATATTCCTTTAGGTCTATACATTATCCGTGGAG 357
Query 394 AAAATGTTGTCTTGATTGGTGAATTGGACGTGGAAAAAGAAGAGCTTCCAGCTCATATGG 453
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||
Sbjct 358 AAAATGTTGTCTTGATTGGTGAATTGGACGTTGAAAAAGAAGAGCTTCCTGCTCAAATGG 417
Query 454 TTCAGGTTCCAGAAGCAGAGATAAAAAGGGCTCAGAAAGCAGAGAAGGAAGAAATGCTTT 513
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 418 TTCAGGTTTCAGAAGCAGAGATAAAAAGGGCTCAGAAAGCAGAGAAAGAAGAAATGCTTT 477
Query 514 TAAAGGGCACAATGCGGAAAAGAATGGAGTTCCTTGATCTCGATTAGGGCATTTTCCTAT 573
| ||||| |||||||| ||||||||||||||||||||||||||||||| |||| | |||
Sbjct 478 TGAAGGGTACAATGCGAAAAAGAATGGAGTTCCTTGATCTCGATTAGGATATTTGCTTAT 537
Query 574 GTGTTGCAGCATTGTAGAAACTAGAAGATCTCAAGATGGAGGATACAGAAGATCCTTAAA 633
||| |||||||| ||||||||||||||| || ||||||||| ||||||||||||||||||
Sbjct 538 GTGCTGCAGCATCGTAGAAACTAGAAGACCTGAAGATGGAGAATACAGAAGATCCTTAAA 597
Query 634 CGTCATAATGTTAG-TTGATGTGTGTATGTGTGGATGACATTGATGAATCCTCAGAACTT 692
||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 598 TGTCATAATGTT-GCTTGATGTGTGTATGTGTGGATGACATTGATGAATCCTTGGAACTT 656
Query 693 AGTCGTTGCAGATCCTCTGCTCTGTTTATGGAATGAAATTGTTGAGCCTGTTCTTTACTG 752
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 657 AGTGGTTGCAGATCCTCTGCTCTGTTTATGGAATGAAATTGTTGAGCATGTTCTTTACTG 716
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28287204414
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5