BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19130.1
Length=857
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312852 jgi|Araly1|312852|fgenesh1_pm.C_scaffold_1001632 872 0.0
> Ahg312852 jgi|Araly1|312852|fgenesh1_pm.C_scaffold_1001632
Length=582
Score = 872 bits (472), Expect = 0.0
Identities = 548/582 (94%), Gaps = 15/582 (3%)
Strand=Plus/Plus
Query 71 ATGGTGAAGTCTTCAGAAATCGTCGGAAAACTTAATCTCAGGGCACACCAAGAAGGAGGC 130
||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||
Sbjct 1 ATGGTGAAGTCTTCAGAAATCGTGGGAAAACTCAATCTCAGGGCTCACCAAGAAGGAGGC 60
Query 131 TTTTTCGCTGAAACTTTCAGAGATTCTTCTGTTTTCCTCTCCACCTCTCAGCT--C-CC- 186
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 61 TTTTTCGCTGAAACTTTCAGAGATTCTTCTGTTTTCCTCTCCACCTCTCAGCTCCCACCA 120
Query 187 TCC---AA-------CCT-TTAAGGTGGACAGAGCTGTGAGCACAAGTATCTACTTCTTG 235
|| || ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACCTTTAACTCTCTTCCTCTTAAGGTGGACAGAGCTGTGAGCACAAGTATCTACTTCTTG 180
Query 236 CTTCCATCTGGGAGCGTTTCTCGTCTTCATCGCATACCAATGGCTGAAACCTGGCACTTT 295
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 CTTCCATCTGGTAGCGTTTCTCGTCTTCATCGCATACCAATGGCTGAAACGTGGCACTTT 240
Query 296 TATTTGGGTGAACCCCTTACTGTAGTGGAACTCTACGATGATGGGAAGTTGAAATTCACA 355
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 241 TATTTGGGTGAACCCCTTACCGTAGTGGAACTCTACGATGATGGGAAGTTGAAATTCACA 300
Query 356 TGTCTTGGTCCTGACTTGTTTGAAGGTGATCAGAAGCCTCAGTACACGGTCCCTCCAAAC 415
|||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 301 TGTCTTGGTCCTAACTTGCTAGAAGGTGATCAGAAGCCTCAGTACACGGTCCCTCCAAAC 360
Query 416 GTCTGGTTTGGTTCGTTTCCTACAAAGGATGTTCATTTTTCTCAAGACGGGGCTCTGCTT 475
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 361 GTCTGGTTTGGTTCGTTTCCTACAAAGGATGTTCATTTTTCTCAAGACGGGACTCTGCTT 420
Query 476 AAAGCTGAGGCTAGAGACTCTGAGAACCATTTCTCTCTTGTTGGCTGCACCTGCGCTCCT 535
||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 421 AAAGCTGAGCCTAGAGACTCTGACAACCATTTCTCTCTTGTCGGCTGCACCTGCGCTCCC 480
Query 536 GCTTTCCAGTTCGAGGACTTTGAGCTCGCGAAACGCTCTGATCTCTTATCAAGGTTTCCG 595
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 481 GCTTTCCAGTTCGAGGACTTTGAGCTCGCGAAACGCTCTGATCTCTTATCGCGGTTTCCT 540
Query 596 CAACACGAGTCACTCATCACAATGCTATCTTACCCGGAGTGA 637
||||||||||||||||||||||||||||||||||| ||||||
Sbjct 541 CAACACGAGTCACTCATCACAATGCTATCTTACCCTGAGTGA 582
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31718266944
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5