BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19140.2
Length=1294
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472138 jgi|Araly1|472138|fgenesh2_kg.1__2092__AT1G19140.2 1949 0.0
> Ahg472138 jgi|Araly1|472138|fgenesh2_kg.1__2092__AT1G19140.2
Length=1281
Score = 1949 bits (1055), Expect = 0.0
Identities = 1223/1300 (94%), Gaps = 27/1300 (2%)
Strand=Plus/Plus
Query 1 GTTAGCGGGGTCGGTTACGAAGAAAGGAAGCTCTTTTACATTCTCGTGGCAACGATCTCA 60
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 GTTACCGGGGTCGGTTACGAAGAAAGGAAGCTCTTTTACTTTCTCGTGGCAACGATCTCA 60
Query 61 TCTACGTGTCACGAAAACTCAAATCTCTTACTCCGGCGAACGATGTACCGAACGGCGGCG 120
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 61 TCTACGTGTCAC-AAAACTCAAATCTCTTACTCCGACGAACGATGTACCGAACGGCGGCG 119
Query 121 AAGCGTCTTCTCGCCGGTGGTGGAATCACTACCACCCGTCTCCTCCGATTACCGAAGCTC 180
|||||| ||||||||||||||||| |||| |||||||| ||||||||||| |||||||||
Sbjct 120 AAGCGTTTTCTCGCCGGTGGTGGATTCACAACCACCCGCCTCCTCCGATTTCCGAAGCTC 179
Query 181 AGGTCTACAATCATCCCTTCCTCTTACACTTCCGGTCTCTGCACTTCGTCGAT---TGGT 237
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 180 AGGTCCACAATCATCCCTTCCTCTTACACTTCCGGTCTCTGCACTTCGTCGATGGGTGGT 239
Query 238 GGTAATACTGAATCACCAATGGGTAAGCAGTCTGTGAACCCTAATCAATCGGGTCCAACG 297
|||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||
Sbjct 240 GGTAATACTGAATCGCCAATGGGTAATCAATCTGTGAACCCTAATCAATCGGGTCCAA-- 297
Query 298 GCGTCGTCTTCTACGGGTACAGGGGAAGGACAACGCCGACATGAGAGCAGAAAGCCGAGA 357
|| | |||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 298 -CG--G-------CGGGTACAGGGGAAGGACAACGTCGACATGAGAGCAGGAAGCCGAGA 347
Query 358 GCTGAGTTCCAAGAAGAGCAGGCTCGTGTTCTCTCTGCGTCTCTCCGTCACGTGCCGAGG 417
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 348 GCTGAGTTCCAAGAAGAGCAGGCTCGTGTTCTCTCTGCGTCTCTTCGTCACGTGCCGAGA 407
Query 418 TTAGGTTGGACGGAAGAAGCGATGATGGCTGGTTCAAGGGATGTTGGTGTGTCTCCTTCG 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 408 TTAGGTTGGACGGAAGAAGCGATGATGGCTGGTTCAAGGGATGTTGGTGTGTCTCCTTCG 467
Query 478 ATTGTTGGGTCTTTCTCCAGGAAAGAAGCTGCTCTTGTTGAGTTCTTCATGGATGAATGC 537
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 ATTGTTGGCTCTTTCTCCAGGAAAGAAGCTGCTCTTGTTGAGTTCTTCATGGATGAATGC 527
Query 538 CTTCAATTGCTTATGGATAGAATAGACTCTGGATTGGATTTGCAAAATCTGATTCCAAGT 597
||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| ||||||
Sbjct 528 CTTCAATTGCTTATGGACAGAATTGACTCTGGATTGGATTTGCAAAACCTGATCCCAAGT 587
Query 598 GAACGTATCT-CCAAGCTCATTAGAATTCGTCTAGAAATGCAAGTCCCTTACATGTCAAA 656
|||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 588 GAACGTAT-TGCCAAGCTCATTAGAATTCGCCTAGAAATGCAAGTCCCTTACATGTCAAA 646
Query 657 ATGGCCCCAAGCTCTTAGCATTCAGGCGCATCCTCTGAATGTCCCAACGAGTTTTAAGCA 716
||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 647 ATGGCCCCAGGCTCTTAGCATCCAAGCGCATCCTCTGAATGTCCCAACGAGTTTTAAGCA 706
Query 717 ACGGGCAATGTTAGTTGATGAGATATGGCATGCTGTTGGAGATGGAGCCTCGGATTTAGA 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 ACGGGCAATGTTAGTTGATGAGATATGGCATGCTGTTGGAGATGGAGCCTCGGATTTAGA 766
Query 777 TTGGTATGTCAAGCGTACTATTCTTGGAGGCGTTTACTCAACTACCGAGATTTACATGCT 836
||||||||||||||| |||||||||||||||||||||||||| || ||||| ||||||||
Sbjct 767 TTGGTATGTCAAGCGCACTATTCTTGGAGGCGTTTACTCAACCACAGAGATCTACATGCT 826
Query 837 CACCGATGACTCCTTAGCAGAACATCGCGATACATGGGCATTCTTGGATGACAGAGTCAA 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 827 CACCGATGACTCCTTAGCAGAACATCGCGATACATGGGCATTCTTGGATGACAGAGTCAA 886
Query 897 AGATGCTTTTGATCTTAAGAAGAGCATACAAGAGGCCAAGTATTTTGCAGAAGACATAGG 956
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 887 AGATGCTTTTGATCTGAAGAAGAGCATACAAGAGGCCAAGTATTTCGCAGAAGACATAGG 946
Query 957 AGCTGGAGTTGGGAAGTCGGTTCAAGGACTGATGAATGGAGTTATGCAGACAATGTCCAG 1016
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 947 AGCTGGAGTTGGGAAATCGGTTCAAGGACTGATGAATGGAGTTATGCAGACGATGTCCAG 1006
Query 1017 AAGAAGTGGTGGCTCTGCGTTTTGAAAAGATCACACCTTTA-CACATGATTCTGCTTCAC 1075
|| ||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||
Sbjct 1007 GAGGAGTGGTGGCTCTGCGTTTTGAGAAGATCACAC-TTTAACACATGATTCTGCTTCAC 1065
Query 1076 ACTCCTTACGGATTCTCCAATATTTTGAGTTGGGATTTACT--A-TAATAATGAGATTAG 1132
|||||| ||||||||||||||||||||||| || | || | |||||||||||||||
Sbjct 1066 --TCCTTAAAGATTCTCCAATATTTTGAGTTGGCATATGCTCTAATAATAATGAGATTAG 1123
Query 1133 ACTTATATGAGTTGAAGTGAAGGCATATGAACTAATATATTATCTTCTACGTTTGAATAA 1192
||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1124 ACT-ATATGACTTGAAGTGAAGGCATATGAACTA-TATATTATCTTCTACGTTTGAATAA 1181
Query 1193 ACCATTGAGTTTGAAATCTTTAATTTGTAAATAAGGATGAAACCTGTTCTGTGTTTGGTT 1252
|||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||
Sbjct 1182 ACCATTGAGTTTGAAATCTTTAATTTGTAAATGTGGATGAAAACTGTGCTGTGTTTGGTT 1241
Query 1253 GTTCTGTGCGTAAACAGAGTTGGAAACTTGTAATTTTGGT 1292
||||||| |||||||||||||||||||| |||| |||||
Sbjct 1242 ATTCTGTGAGTAAACAGAGTTGGAAACTTTTAATCTTGGT 1281
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48377981673
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5